Wall clock time and date at job start Fri Apr 10 2020 22:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00151 * 2 1 4 4 H 1.48500 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46927 * 299.99765 * 3 2 1 6 6 H 1.48507 * 109.47074 * 59.99355 * 3 2 1 7 7 C 1.38810 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00050 * 160.40021 * 7 2 1 9 9 N 1.36936 * 120.00198 * 340.40019 * 7 2 1 10 10 C 1.43428 * 120.53868 * 156.68339 * 9 7 2 11 11 C 1.54897 * 116.08288 * 271.59504 * 10 9 7 12 12 C 1.54843 * 110.14272 * 318.63900 * 11 10 9 13 13 C 1.50126 * 110.81661 * 321.13699 * 12 11 10 14 14 H 1.09002 * 110.24623 * 338.70239 * 13 12 11 15 15 N 1.46502 * 110.25170 * 216.79709 * 13 12 11 16 16 C 1.34775 * 120.00450 * 154.99525 * 15 13 12 17 17 O 1.21281 * 119.99789 * 359.97438 * 16 15 13 18 18 C 1.50696 * 120.00022 * 180.02562 * 16 15 13 19 19 N 1.46499 * 109.47102 * 180.02562 * 18 16 15 20 20 C 1.46764 * 124.34826 * 269.72491 * 19 18 16 21 21 C 1.54657 * 105.38190 * 162.85343 * 20 19 18 22 22 C 1.54624 * 101.68779 * 25.76478 * 21 20 19 23 23 C 1.34421 * 124.35167 * 90.02317 * 19 18 16 24 24 O 1.21281 * 124.94143 * 0.37851 * 23 19 18 25 25 C 1.52523 * 105.41991 * 97.67684 * 13 12 11 26 26 C 1.46239 * 114.27643 * 270.59640 * 25 13 12 27 27 H 0.97003 * 120.00075 * 0.02562 * 1 2 3 28 28 H 1.08996 * 108.15874 * 33.31372 * 10 9 7 29 29 H 1.09008 * 108.15813 * 150.08458 * 10 9 7 30 30 H 1.09002 * 109.36037 * 198.43609 * 11 10 9 31 31 H 1.08993 * 109.36162 * 78.84743 * 11 10 9 32 32 H 1.08996 * 109.21008 * 200.78927 * 12 11 10 33 33 H 1.09001 * 109.20536 * 81.47829 * 12 11 10 34 34 H 0.97000 * 119.99619 * 335.00021 * 15 13 12 35 35 H 1.09004 * 109.47046 * 299.99542 * 18 16 15 36 36 H 1.09002 * 109.47373 * 59.99879 * 18 16 15 37 37 H 1.09007 * 110.24475 * 281.97882 * 20 19 18 38 38 H 1.08996 * 110.24941 * 43.98152 * 20 19 18 39 39 H 1.09005 * 111.19391 * 267.58918 * 21 20 19 40 40 H 1.09003 * 110.82143 * 143.77309 * 21 20 19 41 41 H 1.09001 * 110.49057 * 216.31023 * 22 21 20 42 42 H 1.08996 * 110.60047 * 93.72009 * 22 21 20 43 43 H 1.09000 * 108.52178 * 31.84295 * 25 13 12 44 44 H 1.09002 * 108.52308 * 149.35868 * 25 13 12 45 45 H 1.09006 * 109.84086 * 177.91345 * 26 25 13 46 46 H 1.08994 * 109.84751 * 298.89518 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0433 -1.2294 -0.3132 9 7 1.3851 -2.3535 0.3989 10 6 1.8644 -3.6322 -0.0398 11 6 1.2862 -4.1535 -1.3789 12 6 -0.2325 -3.8607 -1.4540 13 6 -0.8830 -4.0706 -0.1174 14 1 -0.2679 -4.7221 0.5034 15 7 -2.2185 -4.6479 -0.2885 16 6 -2.7726 -5.3708 0.7049 17 8 -2.1654 -5.5437 1.7404 18 6 -4.1462 -5.9651 0.5286 19 7 -4.5204 -6.6980 1.7406 20 6 -4.2424 -8.1213 1.9666 21 6 -4.4038 -8.3340 3.4899 22 6 -5.3811 -7.1954 3.8634 23 6 -5.1674 -6.1549 2.7861 24 8 -5.5271 -4.9987 2.8560 25 6 -0.9805 -2.6831 0.5086 26 6 0.1863 -2.2978 1.3015 27 1 -0.4850 0.8401 -0.0004 28 1 2.9483 -3.5734 -0.1378 29 1 1.6348 -4.3648 0.7341 30 1 1.4507 -5.2287 -1.4494 31 1 1.7911 -3.6577 -2.2079 32 1 -0.6906 -4.5274 -2.1845 33 1 -0.3834 -2.8278 -1.7680 34 1 -2.7040 -4.5099 -1.1168 35 1 -4.8671 -5.1672 0.3499 36 1 -4.1407 -6.6470 -0.3217 37 1 -4.9567 -8.7366 1.4193 38 1 -3.2244 -8.3603 1.6593 39 1 -3.4516 -8.2162 4.0073 40 1 -4.8425 -9.3093 3.7006 41 1 -5.1340 -6.7865 4.8431 42 1 -6.4105 -7.5534 3.8490 43 1 -1.1141 -1.9521 -0.2889 44 1 -1.8606 -2.6542 1.1510 45 1 0.0566 -1.2848 1.6824 46 1 0.3154 -2.9924 2.1315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052191380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:19:50 Heat of formation + Delta-G solvation = -36.040161 kcal Electronic energy + Delta-G solvation = -26813.609651 eV Core-core repulsion = 23125.189952 eV Total energy + Delta-G solvation = -3688.419699 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.62908 -39.35100 -37.55719 -36.39807 -34.53110 -33.05642 -32.43279 -30.93002 -30.45141 -27.75378 -27.62319 -25.92243 -23.78939 -23.06407 -22.13468 -20.79533 -19.98743 -19.52357 -19.00189 -17.30019 -16.91452 -16.58412 -16.37644 -15.52475 -15.47393 -14.86475 -14.54912 -13.95901 -13.87622 -13.80675 -13.70296 -13.65047 -13.30838 -13.10440 -12.76526 -12.67362 -12.24566 -11.89840 -11.76334 -11.65335 -11.37734 -11.23752 -11.19553 -10.75754 -10.73614 -10.33989 -10.13917 -10.00741 -9.88836 -9.81448 -9.74086 -9.49450 -9.22055 -8.75937 -8.61734 -8.29408 -6.68266 -5.75505 -3.14711 2.44618 2.79782 2.86457 3.39815 3.48627 3.50327 3.59997 4.17543 4.26971 4.54043 4.61022 4.82461 4.92307 4.94979 5.15122 5.24109 5.33229 5.36907 5.43858 5.49002 5.59607 5.64407 5.70338 5.78678 5.78929 6.14634 6.24585 6.30145 6.34101 6.49508 6.56450 6.69976 6.87485 6.91566 6.95865 6.96710 7.10959 7.16425 7.31944 7.63078 7.77793 7.83888 8.00388 8.09710 8.46269 8.52371 9.22438 9.90527 10.44215 11.31622 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.003342 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.696081 B = 8375.250610 C = 8901.559628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.001 3.999 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.247 4.247 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.155 3.845 11 C -0.139 4.139 12 C -0.112 4.112 13 C 0.147 3.853 14 H 0.084 0.916 15 N -0.718 5.718 16 C 0.491 3.509 17 O -0.531 6.531 18 C 0.106 3.894 19 N -0.604 5.604 20 C 0.105 3.895 21 C -0.130 4.130 22 C -0.152 4.152 23 C 0.521 3.479 24 O -0.528 6.528 25 C -0.133 4.133 26 C 0.170 3.830 27 H 0.251 0.749 28 H 0.033 0.967 29 H 0.028 0.972 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.394 0.606 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.029 0.971 45 H 0.091 0.909 46 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.489 -18.629 -0.013 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.025 3.975 11 C -0.181 4.181 12 C -0.150 4.150 13 C 0.043 3.957 14 H 0.102 0.898 15 N -0.369 5.369 16 C 0.274 3.726 17 O -0.407 6.407 18 C -0.020 4.020 19 N -0.338 5.338 20 C -0.018 4.018 21 C -0.168 4.168 22 C -0.193 4.193 23 C 0.309 3.691 24 O -0.404 6.404 25 C -0.172 4.172 26 C 0.046 3.954 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.227 0.773 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.047 0.953 45 H 0.109 0.891 46 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -10.299 -17.938 0.748 20.698 hybrid contribution 0.157 0.995 -0.711 1.233 sum -10.142 -16.943 0.037 19.747 Atomic orbital electron populations 1.69974 1.05086 1.25070 1.54392 1.24892 0.95224 0.98171 1.01377 0.86277 0.79396 0.84248 0.77146 1.20443 1.21971 1.21698 1.19254 0.93620 0.85397 1.39377 0.91480 1.44278 1.33758 1.00892 1.52045 1.20426 0.96415 0.88238 0.92384 1.22830 0.94995 0.98336 1.01951 1.21699 0.95991 1.02408 0.94910 1.20490 0.81018 0.96133 0.98022 0.89824 1.46256 1.19757 1.53110 1.17819 1.21015 0.88143 0.79184 0.84213 1.90699 1.63154 1.59717 1.27145 1.21219 0.95121 0.97983 0.87666 1.47773 1.57572 1.10829 1.17620 1.22117 1.01981 0.80797 0.96856 1.22604 1.00569 0.98790 0.94799 1.22292 1.01688 0.95892 0.99385 1.20924 0.76500 0.88276 0.83405 1.90748 1.52192 1.17809 1.79605 1.21326 0.98833 0.94683 1.02387 1.20085 0.84941 1.00514 0.89891 0.93836 0.94879 0.95363 0.93791 0.92677 0.94147 0.90110 0.77278 0.87184 0.87576 0.90995 0.90211 0.89615 0.89260 0.87960 0.87936 0.88009 0.95253 0.89127 0.97373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.11 9.43 55.49 0.52 -24.58 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 21.71 29.60 -169.99 -5.03 16.68 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.25 -6.69 9.62 -15.06 -0.14 -6.84 16 8 H 0.07 1.81 7.89 -52.48 -0.41 1.40 16 9 N -0.59 -14.69 2.60 -175.09 -0.46 -15.15 16 10 C 0.15 3.30 5.18 -4.67 -0.02 3.28 16 11 C -0.14 -2.58 6.41 -24.76 -0.16 -2.74 16 12 C -0.11 -2.03 5.30 -27.19 -0.14 -2.18 16 13 C 0.15 2.77 2.23 -69.60 -0.16 2.62 16 14 H 0.08 1.75 5.70 -51.93 -0.30 1.46 16 15 N -0.72 -11.00 4.96 -55.45 -0.27 -11.27 16 16 C 0.49 7.78 7.90 -10.99 -0.09 7.69 16 17 O -0.53 -10.73 16.08 5.56 0.09 -10.64 16 18 C 0.11 1.21 6.41 -5.20 -0.03 1.18 16 19 N -0.60 -7.13 2.42 -173.67 -0.42 -7.55 16 20 C 0.11 0.84 7.36 -3.03 -0.02 0.81 16 21 C -0.13 -0.90 7.19 -25.01 -0.18 -1.08 16 22 C -0.15 -1.36 6.86 -26.74 -0.18 -1.54 16 23 C 0.52 7.25 8.02 -10.86 -0.09 7.16 16 24 O -0.53 -9.82 17.59 5.56 0.10 -9.72 16 25 C -0.13 -3.01 4.74 -30.19 -0.14 -3.15 16 26 C 0.17 4.22 5.24 -5.20 -0.03 4.19 16 27 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 29 H 0.03 0.59 6.88 -51.92 -0.36 0.23 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.61 7.85 -51.93 -0.41 0.20 16 33 H 0.08 1.72 6.83 -51.93 -0.35 1.37 16 34 H 0.39 4.73 8.52 -40.82 -0.35 4.38 16 35 H 0.11 1.25 7.92 -51.93 -0.41 0.84 16 36 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.10 2.55 5.29 -51.93 -0.27 2.28 16 44 H 0.03 0.69 8.02 -51.93 -0.42 0.27 16 45 H 0.09 2.50 6.05 -51.93 -0.31 2.19 16 46 H 0.01 0.20 8.12 -51.93 -0.42 -0.22 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -34.63 360.01 -8.89 -43.52 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.37 Total: 3.93 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -1.48 Total: 9.35 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.63 Total: -58.55 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.19 Total: -20.36 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.63 -8.89 -43.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052191380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.483 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds