Wall clock time and date at job start Fri Apr 10 2020 22:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 119.99790 * 2 1 4 4 C 1.38211 * 119.99969 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99993 * 359.74588 * 4 3 2 6 6 C 1.38219 * 119.99961 * 0.50452 * 5 4 3 7 7 C 1.50697 * 120.00069 * 179.76442 * 6 5 4 8 8 H 1.09002 * 109.47269 * 159.73043 * 7 6 5 9 9 C 1.53000 * 109.47099 * 279.73098 * 7 6 5 10 10 N 1.46903 * 109.47025 * 39.73346 * 7 6 5 11 11 C 1.46900 * 111.00037 * 155.00072 * 10 7 6 12 12 H 1.09000 * 109.46989 * 324.99730 * 11 10 7 13 13 C 1.53001 * 109.46848 * 204.99943 * 11 10 7 14 14 C 1.50694 * 109.47168 * 64.99770 * 13 11 10 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 11 16 16 C 1.37885 * 119.99902 * 179.97438 * 14 13 11 17 17 N 1.31518 * 119.99792 * 179.72330 * 16 14 13 18 18 Si 1.86795 * 120.00009 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47088 * 89.99795 * 18 16 14 20 20 H 1.48495 * 109.47293 * 209.99997 * 18 16 14 21 21 H 1.48507 * 109.47015 * 329.99955 * 18 16 14 22 22 C 1.50701 * 109.47449 * 84.99748 * 11 10 7 23 23 C 1.38240 * 119.99660 * 39.72283 * 22 11 10 24 24 C 1.38231 * 119.99610 * 179.78637 * 23 22 11 25 25 C 1.38242 * 120.00125 * 0.44819 * 24 23 22 26 26 C 1.38229 * 119.99825 * 359.80878 * 25 24 23 27 27 C 1.38227 * 120.00009 * 220.00030 * 22 11 10 28 28 C 1.38213 * 120.00284 * 179.97438 * 2 1 3 29 29 H 1.08992 * 109.47019 * 270.02177 * 1 2 3 30 30 H 1.08994 * 109.47026 * 30.02376 * 1 2 3 31 31 H 1.09000 * 109.46713 * 150.02073 * 1 2 3 32 32 H 1.07991 * 120.00030 * 0.02562 * 3 2 1 33 33 H 1.07994 * 120.00192 * 180.02562 * 4 3 2 34 34 H 1.07998 * 120.00131 * 180.27780 * 5 4 3 35 35 H 1.09004 * 109.46910 * 179.97438 * 9 7 6 36 36 H 1.08996 * 109.47598 * 299.99825 * 9 7 6 37 37 H 1.08997 * 109.47463 * 60.00468 * 9 7 6 38 38 H 1.00895 * 110.99822 * 31.04203 * 10 7 6 39 39 H 1.08998 * 109.46837 * 304.99792 * 13 11 10 40 40 H 1.09002 * 109.46926 * 184.99595 * 13 11 10 41 41 H 0.97000 * 119.99468 * 179.97438 * 17 16 14 42 42 H 1.08002 * 119.99993 * 0.02562 * 23 22 11 43 43 H 1.07997 * 120.00249 * 180.28043 * 24 23 22 44 44 H 1.08003 * 120.00084 * 179.83155 * 25 24 23 45 45 H 1.08004 * 120.00042 * 180.02562 * 26 25 24 46 46 H 1.08005 * 120.00295 * 359.97438 * 27 22 11 47 47 H 1.07997 * 119.99607 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0064 6 6 3.5807 -1.1969 0.0012 7 6 4.3342 -2.5019 0.0022 8 1 3.6795 -3.2993 0.3538 9 6 4.8067 -2.8191 -1.4181 10 7 5.4975 -2.3950 0.8929 11 6 5.9028 -3.7164 1.3905 12 1 5.0182 -4.3358 1.5387 13 6 6.6417 -3.5558 2.7205 14 6 5.6946 -3.0120 3.7589 15 1 4.6683 -2.8015 3.4964 16 6 6.1382 -2.7831 5.0442 17 7 5.3130 -2.3034 5.9490 18 14 7.9134 -3.1464 5.4982 19 1 8.7421 -1.9370 5.2622 20 1 7.9898 -3.5270 6.9315 21 1 8.4194 -4.2642 4.6615 22 6 6.8137 -4.3738 0.3859 23 6 7.7654 -3.6233 -0.2791 24 6 8.6038 -4.2272 -1.1973 25 6 8.4846 -5.5797 -1.4573 26 6 7.5295 -6.3290 -0.7962 27 6 6.6939 -5.7260 0.1253 28 6 2.1981 -1.1969 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1327 0.0010 34 1 5.3517 0.0002 0.0113 35 1 5.3521 -3.7629 -1.4172 36 1 3.9436 -2.8985 -2.0790 37 1 5.4615 -2.0219 -1.7697 38 1 5.3112 -1.7625 1.6566 39 1 7.4753 -2.8653 2.5920 40 1 7.0196 -4.5251 3.0456 41 1 5.6250 -2.1428 6.8533 42 1 7.8563 -2.5660 -0.0784 43 1 9.3503 -3.6419 -1.7135 44 1 9.1379 -6.0510 -2.1767 45 1 7.4366 -7.3857 -0.9990 46 1 5.9477 -6.3115 0.6419 47 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090665607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:20:29 Heat of formation + Delta-G solvation = 35.335488 kcal Electronic energy + Delta-G solvation = -25293.781072 eV Core-core repulsion = 22019.305717 eV Total energy + Delta-G solvation = -3274.475355 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 309.179 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.61170 -38.91383 -36.48028 -33.81695 -32.41102 -31.94257 -30.51332 -29.93124 -29.47391 -27.91843 -26.72470 -24.67517 -22.92606 -22.14536 -21.78243 -21.64841 -19.63022 -19.35824 -17.04631 -16.45880 -16.19298 -15.44529 -15.22642 -14.95436 -14.58357 -14.27338 -14.10793 -13.80198 -13.52194 -13.37413 -12.95695 -12.88382 -12.72575 -12.60989 -12.47142 -12.17613 -12.11504 -11.96993 -11.59013 -11.52700 -11.21671 -11.14768 -10.89993 -10.80586 -10.65979 -10.39026 -10.28770 -9.95331 -9.76650 -9.26356 -8.59710 -8.56274 -8.51641 -8.34229 -8.14567 -7.85848 -6.09985 -4.09333 1.59306 1.62890 1.77296 1.82370 3.29249 3.36980 3.41672 3.98500 4.20738 4.41430 4.67586 4.94127 5.01118 5.12015 5.25441 5.26655 5.31195 5.36131 5.36739 5.40978 5.55483 5.62873 5.67150 5.72001 5.77282 5.83372 5.88336 5.93044 5.97878 6.08549 6.17547 6.21002 6.29728 6.33905 6.36155 6.43738 6.53938 6.57226 6.72472 6.76361 6.82847 6.86341 6.88551 7.11340 7.15217 7.21863 7.26226 7.41946 7.70130 7.83023 8.15326 8.42942 8.91434 9.52089 11.02632 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.008714 B = 0.005477 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3212.301407 B = 5110.944580 C = 7471.411545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.127 4.127 4 C -0.119 4.119 5 C -0.102 4.102 6 C -0.074 4.074 7 C 0.125 3.875 8 H 0.047 0.953 9 C -0.133 4.133 10 N -0.673 5.673 11 C 0.136 3.864 12 H 0.047 0.953 13 C -0.009 4.009 14 C -0.525 4.525 15 H 0.071 0.929 16 C 0.073 3.927 17 N -0.898 5.898 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.265 1.265 22 C -0.052 4.052 23 C -0.088 4.088 24 C -0.130 4.130 25 C -0.137 4.137 26 C -0.127 4.127 27 C -0.125 4.125 28 C -0.115 4.115 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.365 0.635 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.263 0.737 42 H 0.128 0.872 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.351 0.811 -15.766 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.120 4.120 6 C -0.074 4.074 7 C 0.015 3.985 8 H 0.064 0.936 9 C -0.190 4.190 10 N -0.308 5.308 11 C 0.026 3.974 12 H 0.065 0.935 13 C -0.046 4.046 14 C -0.563 4.563 15 H 0.089 0.911 16 C -0.130 4.130 17 N -0.537 5.537 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.053 4.053 23 C -0.106 4.106 24 C -0.148 4.148 25 C -0.155 4.155 26 C -0.145 4.145 27 C -0.144 4.144 28 C -0.133 4.133 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.188 0.812 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.073 0.927 42 H 0.146 0.854 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.918 0.882 -16.062 16.200 hybrid contribution 0.214 -0.371 1.128 1.206 sum -1.704 0.511 -14.934 15.040 Atomic orbital electron populations 1.20757 0.91599 1.02251 1.02231 1.19810 0.95743 0.93202 1.00416 1.20947 0.94375 0.97143 1.02099 1.21119 0.94175 0.98052 1.00360 1.21066 1.00614 0.91450 0.98886 1.20007 0.93311 0.95316 0.98791 1.20456 0.90660 0.92592 0.94806 0.93558 1.21842 1.00345 1.02207 0.94653 1.60595 1.34708 1.11492 1.24032 1.20473 0.95532 0.88833 0.92520 0.93504 1.19736 0.96530 0.97292 0.91061 1.21017 0.97836 1.43558 0.93850 0.91116 1.24967 0.97338 0.94268 0.96383 1.69915 1.35377 1.44734 1.03636 0.86802 0.85724 0.79407 0.77542 1.20176 1.21478 1.18963 1.20191 0.96274 0.93042 0.95804 1.21048 0.94047 1.00470 0.95068 1.21126 0.99665 0.94858 0.99182 1.20982 0.99244 0.94506 1.00796 1.20981 0.96613 0.99229 0.97651 1.21059 1.00022 0.94831 0.98459 1.20887 0.93645 0.97400 1.01398 0.91276 0.91905 0.91828 0.86676 0.86362 0.85162 0.91998 0.93620 0.92296 0.81219 0.95873 0.95913 0.92684 0.85371 0.86900 0.87105 0.86925 0.86628 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 2 C -0.09 -1.23 5.88 -104.62 -0.62 -1.84 16 3 C -0.13 -1.67 9.70 -39.58 -0.38 -2.05 16 4 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 5 C -0.10 -1.53 9.00 -39.58 -0.36 -1.89 16 6 C -0.07 -1.14 4.72 -104.62 -0.49 -1.64 16 7 C 0.12 1.98 2.82 -68.86 -0.19 1.78 16 8 H 0.05 0.78 7.29 -51.93 -0.38 0.40 16 9 C -0.13 -1.89 8.82 37.16 0.33 -1.56 16 10 N -0.67 -12.00 4.79 -102.17 -0.49 -12.49 16 11 C 0.14 2.62 2.19 -68.86 -0.15 2.47 16 12 H 0.05 0.95 7.29 -51.93 -0.38 0.57 16 13 C -0.01 -0.20 3.62 -27.89 -0.10 -0.30 16 14 C -0.52 -14.17 8.67 -34.44 -0.30 -14.47 16 15 H 0.07 2.06 7.73 -52.49 -0.41 1.65 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 18 Si 0.88 21.50 27.47 -169.99 -4.67 16.84 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 22 C -0.05 -0.89 2.95 -104.62 -0.31 -1.20 16 23 C -0.09 -1.41 8.59 -39.58 -0.34 -1.75 16 24 C -0.13 -1.83 10.05 -39.58 -0.40 -2.22 16 25 C -0.14 -1.82 10.05 -39.58 -0.40 -2.22 16 26 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 27 C -0.13 -1.97 9.65 -39.58 -0.38 -2.35 16 28 C -0.11 -1.68 9.33 -39.58 -0.37 -2.05 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 31 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.13 1.93 7.71 -52.49 -0.40 1.53 16 35 H 0.06 0.92 5.93 -51.93 -0.31 0.62 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.36 7.41 6.46 -39.29 -0.25 7.15 16 39 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 40 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.13 2.09 7.71 -52.49 -0.40 1.68 16 43 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.11 1.20 8.06 -52.48 -0.42 0.78 16 45 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 46 H 0.12 1.73 8.04 -52.48 -0.42 1.31 16 47 H 0.12 1.56 8.04 -52.49 -0.42 1.14 16 LS Contribution 378.73 15.07 5.71 5.71 Total: -1.00 -29.21 378.73 -11.20 -40.42 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -7.53 Total: 10.10 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: -4.99 Total: -34.32 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.28 Total: -38.75 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.21 -11.20 -40.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090665607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.751 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds