Wall clock time and date at job start Fri Apr 10 2020 22:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47155 * 2 1 4 4 C 1.53000 * 109.47345 * 119.99819 * 2 1 3 5 5 N 1.46499 * 109.46840 * 65.00000 * 4 2 1 6 6 C 1.47242 * 125.42370 * 269.72140 * 5 4 2 7 7 C 1.53629 * 103.79929 * 182.37634 * 6 5 4 8 8 H 1.08997 * 112.07542 * 112.67991 * 7 6 5 9 9 C 1.53175 * 111.00495 * 238.01690 * 7 6 5 10 10 N 1.47092 * 108.63055 * 164.95246 * 9 7 6 11 11 C 1.46901 * 110.99867 * 170.23213 * 10 9 7 12 12 C 1.53001 * 109.46786 * 191.76791 * 11 10 9 13 13 C 1.52998 * 109.46928 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46843 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00256 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99791 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00162 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99977 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47018 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46953 * 120.00177 * 18 16 14 21 21 H 1.48498 * 109.46863 * 240.00120 * 18 16 14 22 22 C 1.46722 * 112.36098 * 295.19259 * 10 9 7 23 23 C 1.53682 * 109.81512 * 63.73845 * 22 10 9 24 24 N 1.46989 * 107.00993 * 309.41825 * 23 22 10 25 25 C 1.33213 * 128.93724 * 230.55331 * 24 23 22 26 26 O 1.21590 * 123.23903 * 347.72290 * 25 24 23 27 27 H 1.09004 * 109.47135 * 60.00050 * 1 2 3 28 28 H 1.09002 * 109.47179 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47639 * 299.99905 * 1 2 3 30 30 H 1.09002 * 109.47493 * 240.00117 * 2 1 3 31 31 H 1.09001 * 109.47241 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46751 * 299.99968 * 3 2 1 33 33 H 1.09002 * 109.46824 * 59.99708 * 3 2 1 34 34 H 1.09002 * 109.47398 * 185.00327 * 4 2 1 35 35 H 1.09001 * 109.47194 * 305.00507 * 4 2 1 36 36 H 1.08994 * 110.56147 * 301.07694 * 6 5 4 37 37 H 1.08994 * 110.56488 * 63.93290 * 6 5 4 38 38 H 1.09000 * 109.61514 * 45.21002 * 9 7 6 39 39 H 1.09007 * 109.75136 * 284.77760 * 9 7 6 40 40 H 1.09004 * 109.47112 * 311.76885 * 11 10 9 41 41 H 1.08996 * 109.47183 * 71.77056 * 11 10 9 42 42 H 1.08998 * 109.47141 * 300.00301 * 12 11 10 43 43 H 1.09004 * 109.47323 * 60.00297 * 12 11 10 44 44 H 1.08998 * 109.47556 * 300.00170 * 13 12 11 45 45 H 1.08996 * 109.47012 * 60.00283 * 13 12 11 46 46 H 0.96993 * 120.00454 * 180.02562 * 17 16 14 47 47 H 1.09000 * 109.41575 * 303.63247 * 22 10 9 48 48 H 1.09001 * 109.41694 * 183.84520 * 22 10 9 49 49 H 1.09005 * 109.94483 * 190.04476 * 23 22 10 50 50 H 1.08999 * 109.94543 * 68.79562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1906 6 6 0.4040 -2.6981 1.7290 7 6 0.5363 -4.2042 1.4563 8 1 0.6327 -4.7802 2.3766 9 6 -0.6266 -4.7109 0.5977 10 7 -0.2766 -6.0380 0.0685 11 6 -1.4375 -6.6735 -0.5690 12 6 -1.1265 -8.1464 -0.8421 13 6 -2.3358 -8.8085 -1.5054 14 6 -2.0297 -10.2595 -1.7739 15 1 -1.0689 -10.6686 -1.4984 16 6 -2.9763 -11.0647 -2.3711 17 7 -4.1462 -10.5664 -2.7069 18 14 -2.5967 -12.8631 -2.7045 19 1 -1.2217 -13.1735 -2.2374 20 1 -3.5711 -13.7174 -1.9792 21 1 -2.6953 -13.1277 -4.1623 22 6 0.8664 -5.9889 -0.8501 23 6 2.1215 -5.5227 -0.0957 24 7 1.7580 -4.2948 0.6259 25 6 2.3816 -3.1177 0.6424 26 8 3.5030 -2.9513 0.2029 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1263 -0.6442 1.2952 35 1 1.6053 -0.2617 2.1370 36 1 0.3272 -2.5063 2.7992 37 1 -0.4591 -2.2903 1.2030 38 1 -0.7988 -4.0214 -0.2287 39 1 -1.5282 -4.7857 1.2057 40 1 -2.3005 -6.6010 0.0930 41 1 -1.6575 -6.1682 -1.5093 42 1 -0.2635 -8.2189 -1.5040 43 1 -0.9065 -8.6518 0.0984 44 1 -3.1985 -8.7360 -0.8432 45 1 -2.5562 -8.3033 -2.4458 46 1 -4.8122 -11.1329 -3.1267 47 1 0.6507 -5.2920 -1.6600 48 1 1.0409 -6.9818 -1.2648 49 1 2.9245 -5.3145 -0.8029 50 1 2.4369 -6.2900 0.6113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488744513.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:20:22 Heat of formation + Delta-G solvation = -17.539414 kcal Electronic energy + Delta-G solvation = -26403.079549 eV Core-core repulsion = 22851.295197 eV Total energy + Delta-G solvation = -3551.784352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51463 -38.32823 -36.92681 -36.01338 -34.19636 -33.23445 -31.65345 -31.15067 -28.52986 -27.68460 -27.21267 -26.16389 -24.15600 -23.60319 -22.06738 -21.35857 -20.54311 -19.92417 -19.38878 -17.14474 -16.85966 -16.33743 -16.11481 -15.59159 -15.32011 -14.88966 -14.83949 -14.53149 -14.36116 -14.28625 -13.94066 -13.75656 -13.31410 -13.17090 -12.91129 -12.61760 -12.42444 -12.34974 -12.06954 -11.85325 -11.70770 -11.54639 -11.42251 -11.25971 -11.25176 -11.13261 -11.02488 -10.85296 -10.55344 -10.49770 -10.15388 -9.64714 -9.37870 -9.17259 -9.05587 -8.57897 -8.35849 -8.15010 -6.01081 -4.03075 2.24103 3.03746 3.30611 3.38222 3.42559 3.53925 3.81216 4.37257 4.39070 4.46069 4.47174 4.59155 4.67964 4.73399 4.94685 5.03094 5.10637 5.13837 5.19502 5.24597 5.29881 5.33395 5.35080 5.44338 5.47511 5.52104 5.56575 5.64196 5.69662 5.76575 5.78414 5.84260 5.91978 5.95381 5.99642 6.09405 6.24023 6.57063 6.62419 6.65624 6.74267 7.05712 7.22984 7.25164 7.50121 7.66692 7.80527 7.99133 8.42256 8.48949 9.04381 9.61188 11.10375 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.028982 B = 0.002407 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.886859 B =11630.853458 C =12032.237772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.144 4.144 4 C 0.158 3.842 5 N -0.636 5.636 6 C 0.095 3.905 7 C 0.122 3.878 8 H 0.101 0.899 9 C 0.052 3.948 10 N -0.542 5.542 11 C 0.060 3.940 12 C -0.105 4.105 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.039 3.961 23 C 0.158 3.842 24 N -0.630 5.630 25 C 0.704 3.296 26 O -0.590 6.590 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.029 0.971 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.016 0.984 45 H 0.013 0.987 46 H 0.259 0.741 47 H 0.035 0.965 48 H 0.099 0.901 49 H 0.090 0.910 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.802 22.530 9.953 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 C -0.202 4.202 4 C 0.035 3.965 5 N -0.374 5.374 6 C -0.029 4.029 7 C 0.017 3.983 8 H 0.119 0.881 9 C -0.077 4.077 10 N -0.267 5.267 11 C -0.067 4.067 12 C -0.143 4.143 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.090 4.090 23 C 0.036 3.964 24 N -0.367 5.367 25 C 0.406 3.594 26 O -0.468 6.468 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.048 0.952 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.031 0.969 46 H 0.069 0.931 47 H 0.053 0.947 48 H 0.117 0.883 49 H 0.108 0.892 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.489 22.295 9.966 26.200 hybrid contribution -0.396 -0.553 -0.920 1.144 sum 9.092 21.742 9.046 25.243 Atomic orbital electron populations 1.21921 0.94979 1.01894 1.01711 1.21589 0.96395 0.96413 0.99292 1.21762 1.01221 0.95232 1.01975 1.21268 1.00763 0.76968 0.97457 1.47290 1.20328 1.07024 1.62732 1.22441 0.88459 0.91891 1.00082 1.22319 0.85880 0.94717 0.95362 0.88070 1.22488 0.96920 0.90511 0.97817 1.61539 1.07323 1.19269 1.38525 1.22293 0.91065 0.96678 0.96670 1.21673 1.00534 0.91579 1.00497 1.19075 0.92202 0.94965 0.95368 1.21281 1.00233 0.95014 1.39050 0.92598 1.25035 0.95123 0.98631 0.95784 1.69970 1.05552 1.35866 1.42217 0.86545 0.78404 0.85246 0.77869 1.19705 1.21025 1.21066 1.22602 0.90606 1.02297 0.93485 1.21642 0.96674 0.83058 0.95012 1.47429 1.26419 1.11585 1.51308 1.15648 0.83985 0.80852 0.78921 1.90906 1.17392 1.83866 1.54678 0.92723 0.92422 0.92666 0.90819 0.92416 0.92365 0.92539 0.89889 0.90423 0.89868 0.89880 0.94379 0.89366 0.90976 0.95247 0.93406 0.92461 0.96603 0.96858 0.93091 0.94712 0.88253 0.89177 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.87 37.15 0.33 -0.71 16 2 C -0.12 -0.93 3.13 -90.62 -0.28 -1.22 16 3 C -0.14 -0.90 9.19 37.16 0.34 -0.56 16 4 C 0.16 1.31 5.44 -4.04 -0.02 1.29 16 5 N -0.64 -6.55 2.72 -179.09 -0.49 -7.03 16 6 C 0.10 0.74 6.84 -3.31 -0.02 0.71 16 7 C 0.12 1.19 4.09 -66.69 -0.27 0.92 16 8 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 9 C 0.05 0.56 4.91 -3.63 -0.02 0.54 16 10 N -0.54 -7.36 4.53 -234.05 -1.06 -8.42 16 11 C 0.06 0.96 4.98 -3.82 -0.02 0.94 16 12 C -0.10 -2.07 5.09 -26.73 -0.14 -2.21 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 14 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 18 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.04 0.51 5.50 -3.57 -0.02 0.49 16 23 C 0.16 1.94 7.12 -3.42 -0.02 1.92 16 24 N -0.63 -7.88 3.03 -170.03 -0.51 -8.40 16 25 C 0.70 9.82 8.31 -88.78 -0.74 9.09 16 26 O -0.59 -10.48 17.23 5.29 0.09 -10.38 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.45 5.43 -51.93 -0.28 0.17 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.79 7.88 -51.93 -0.41 0.38 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.56 5.49 -51.93 -0.28 0.28 16 38 H 0.04 0.43 7.99 -51.93 -0.41 0.02 16 39 H 0.09 0.83 7.93 -51.92 -0.41 0.42 16 40 H 0.07 1.14 7.91 -51.93 -0.41 0.72 16 41 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 42 H 0.05 0.93 6.38 -51.93 -0.33 0.60 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.10 1.36 6.11 -51.93 -0.32 1.04 16 49 H 0.09 1.12 7.97 -51.93 -0.41 0.71 16 50 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 385.91 15.07 5.82 5.82 Total: -1.00 -33.24 385.91 -11.03 -44.28 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -9.16 Total: -4.63 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.43 Total: -1.73 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -1.33 Total: -49.91 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.24 -11.03 -44.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488744513.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.736 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds