Wall clock time and date at job start Fri Apr 10 2020 22:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.87736 * 2 1 4 4 C 1.55136 * 110.99114 * 236.15283 * 2 1 3 5 5 C 1.54322 * 103.01878 * 206.25551 * 4 2 1 6 6 N 1.47441 * 107.23160 * 22.28432 * 5 4 2 7 7 C 1.46903 * 110.99949 * 123.26108 * 6 5 4 8 8 C 1.50699 * 109.47153 * 69.87300 * 7 6 5 9 9 O 1.21280 * 120.00227 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99593 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99805 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47169 * 180.02562 * 11 10 8 13 13 C 1.53034 * 109.46246 * 185.00044 * 12 11 10 14 14 C 1.53188 * 109.31564 * 178.61583 * 13 12 11 15 15 N 1.46928 * 108.77834 * 54.63496 * 14 13 12 16 16 C 1.36936 * 120.62964 * 126.36680 * 15 14 13 17 17 H 1.07994 * 120.00480 * 331.91792 * 16 15 14 18 18 C 1.38812 * 119.99772 * 151.91615 * 16 15 14 19 19 N 1.31621 * 119.99722 * 343.21919 * 18 16 15 20 20 Si 1.86797 * 120.00136 * 163.21954 * 18 16 15 21 21 H 1.48497 * 109.47343 * 89.99726 * 20 18 16 22 22 H 1.48499 * 109.47138 * 210.00291 * 20 18 16 23 23 H 1.48506 * 109.47011 * 329.99973 * 20 18 16 24 24 C 1.46927 * 118.73611 * 306.64616 * 15 14 13 25 25 C 1.52765 * 109.00866 * 53.30797 * 24 15 14 26 26 C 1.47840 * 108.57088 * 0.98963 * 6 5 4 27 27 H 1.08999 * 109.46949 * 182.39450 * 1 2 3 28 28 H 1.09001 * 109.47242 * 302.38929 * 1 2 3 29 29 H 1.08999 * 109.47038 * 62.39637 * 1 2 3 30 30 H 1.08995 * 110.70648 * 87.87288 * 4 2 1 31 31 H 1.09000 * 110.85609 * 324.70327 * 4 2 1 32 32 H 1.08997 * 109.88794 * 262.87794 * 5 4 2 33 33 H 1.09000 * 109.88798 * 141.68700 * 5 4 2 34 34 H 1.09000 * 109.47226 * 309.87049 * 7 6 5 35 35 H 1.09004 * 109.46817 * 189.87192 * 7 6 5 36 36 H 0.96996 * 120.00396 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.46865 * 59.99944 * 11 10 8 38 38 H 1.08997 * 109.47220 * 300.00352 * 11 10 8 39 39 H 1.08998 * 109.46054 * 304.97425 * 12 11 10 40 40 H 1.09006 * 109.49462 * 58.66129 * 13 12 11 41 41 H 1.09001 * 109.50095 * 298.56652 * 13 12 11 42 42 H 1.09003 * 109.58509 * 294.84723 * 14 13 12 43 43 H 1.09008 * 109.59050 * 174.42536 * 14 13 12 44 44 H 0.97006 * 119.99968 * 180.02562 * 19 18 16 45 45 H 1.08995 * 109.58687 * 173.14018 * 24 15 14 46 46 H 1.08998 * 109.58568 * 293.56704 * 24 15 14 47 47 H 1.08997 * 109.56465 * 185.55583 * 25 24 15 48 48 H 1.08994 * 109.36073 * 65.49365 * 25 24 15 49 49 H 1.08996 * 110.37636 * 94.73393 * 26 6 5 50 50 H 1.09000 * 110.37311 * 217.07643 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0857 -0.8067 -1.2029 5 6 3.4692 -1.2709 -0.7009 6 7 3.4312 -1.2423 0.7728 7 6 3.7612 -2.5593 1.3336 8 6 5.2207 -2.8533 1.1004 9 8 5.9174 -2.0455 0.5234 10 7 5.7515 -4.0145 1.5321 11 6 7.1703 -4.3006 1.3049 12 6 7.5136 -5.6728 1.8880 13 6 9.0189 -5.9181 1.7622 14 6 9.3639 -7.2777 2.3780 15 7 8.5297 -8.3087 1.7458 16 6 9.1000 -9.4181 1.1810 17 1 10.1033 -9.3671 0.7846 18 6 8.3887 -10.6085 1.1182 19 7 7.3241 -10.7795 1.8731 20 14 8.9422 -11.9674 -0.0377 21 1 9.8935 -12.8619 0.6695 22 1 7.7617 -12.7516 -0.4810 23 1 9.6116 -11.3691 -1.2206 24 6 7.0722 -8.1236 1.7255 25 6 6.7525 -6.7572 1.1218 26 6 2.0849 -0.8064 1.2007 27 1 -0.3633 -1.0268 0.0429 28 1 -0.3634 0.5505 0.8678 29 1 -0.3633 0.4762 -0.9107 30 1 2.1885 -0.1685 -2.0805 31 1 1.4486 -1.6632 -1.4234 32 1 4.2421 -0.5941 -1.0651 33 1 3.6682 -2.2851 -1.0470 34 1 3.1544 -3.3235 0.8477 35 1 3.5570 -2.5598 2.4043 36 1 5.1941 -4.6611 1.9926 37 1 7.7773 -3.5367 1.7909 38 1 7.3742 -4.2998 0.2342 39 1 7.2275 -5.7025 2.9393 40 1 9.5608 -5.1322 2.2885 41 1 9.3017 -5.9133 0.7095 42 1 9.1662 -7.2541 3.4497 43 1 10.4164 -7.5015 2.2035 44 1 6.8272 -11.6115 1.8295 45 1 6.6130 -8.9053 1.1204 46 1 6.6838 -8.1704 2.7428 47 1 5.6813 -6.5686 1.1923 48 1 7.0566 -6.7445 0.0752 49 1 1.4523 -1.6708 1.4021 50 1 2.1545 -0.1719 2.0843 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565188048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:20:46 Heat of formation + Delta-G solvation = -24.281771 kcal Electronic energy + Delta-G solvation = -25900.049438 eV Core-core repulsion = 22347.972716 eV Total energy + Delta-G solvation = -3552.076722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.13124 -38.82613 -37.70280 -34.89597 -33.60352 -32.86188 -30.76197 -30.04741 -29.87246 -28.23145 -26.57217 -25.09448 -23.77865 -22.26183 -21.54005 -20.93923 -20.74398 -20.09913 -19.06723 -17.04300 -16.69016 -16.65718 -16.23984 -15.36344 -15.06377 -14.82594 -14.26783 -14.05827 -13.95049 -13.69662 -13.53110 -13.41535 -13.31098 -13.01272 -12.87428 -12.55042 -12.36977 -12.35130 -12.16520 -11.78268 -11.44916 -11.39767 -11.26944 -11.02361 -10.99109 -10.90635 -10.71076 -10.53157 -10.23962 -10.23322 -9.93370 -9.78305 -9.54022 -9.43479 -8.91530 -8.53021 -8.47767 -6.66960 -5.80114 -3.22073 2.71444 3.08548 3.36305 3.43378 3.46126 3.82547 4.24143 4.34722 4.49009 4.56775 4.77985 4.97316 4.99794 5.05514 5.10448 5.14819 5.15944 5.26296 5.30415 5.36480 5.40238 5.41776 5.43118 5.58410 5.58863 5.69725 5.76702 5.88520 5.89087 5.94221 6.05213 6.07380 6.15447 6.29362 6.44952 6.54806 6.57330 6.67565 6.69741 6.71109 6.76549 6.82408 6.98714 7.35291 7.60434 7.63158 7.78810 8.32706 8.44668 9.20951 9.84548 10.41308 11.28586 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.023962 B = 0.002347 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.215743 B =11925.234174 C =12500.903136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.141 4.141 5 C 0.051 3.949 6 N -0.513 5.513 7 C 0.030 3.970 8 C 0.510 3.490 9 O -0.527 6.527 10 N -0.728 5.728 11 C 0.126 3.874 12 C -0.090 4.090 13 C -0.125 4.125 14 C 0.146 3.854 15 N -0.592 5.592 16 C -0.251 4.251 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.904 5.904 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.171 3.829 25 C -0.134 4.134 26 C 0.046 3.954 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.400 0.600 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.017 0.983 43 H 0.054 0.946 44 H 0.253 0.747 45 H 0.086 0.914 46 H 0.016 0.984 47 H 0.045 0.955 48 H 0.055 0.945 49 H 0.048 0.952 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.848 19.034 -1.253 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 H 0.103 0.897 4 C -0.180 4.180 5 C -0.076 4.076 6 N -0.237 5.237 7 C -0.101 4.101 8 C 0.295 3.705 9 O -0.402 6.402 10 N -0.380 5.380 11 C 0.003 3.997 12 C -0.109 4.109 13 C -0.165 4.165 14 C 0.020 3.980 15 N -0.315 5.315 16 C -0.380 4.380 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.045 3.955 25 C -0.173 4.173 26 C -0.082 4.082 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.234 0.766 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.034 0.966 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.037 19.799 -1.480 23.218 hybrid contribution -0.635 -1.766 -0.566 1.960 sum -12.673 18.033 -2.046 22.135 Atomic orbital electron populations 1.21720 0.94335 1.01925 1.01959 1.22283 0.95542 0.99849 0.94415 0.89682 1.22921 0.96731 0.99949 0.98373 1.22784 0.96865 1.01244 0.86723 1.63278 1.26979 1.24683 1.08723 1.22186 0.94012 0.91738 1.02207 1.20443 0.89616 0.81462 0.79002 1.90691 1.62136 1.46533 1.40883 1.46079 1.12056 1.19703 1.60205 1.21513 0.80228 0.97041 1.00922 1.21303 0.97289 0.92570 0.99763 1.21985 0.93874 0.99047 1.01561 1.20890 0.95137 0.87723 0.94293 1.44033 1.01508 1.20452 1.65541 1.19175 1.00334 0.87526 1.31000 0.91767 1.25042 0.98765 0.96949 0.98987 1.70033 1.20483 1.25480 1.38853 0.86315 0.77609 0.81953 0.81022 1.21392 1.21584 1.20500 1.20669 0.84582 0.92447 0.97808 1.22177 0.97285 0.97933 0.99942 1.23152 0.88089 0.98487 0.98440 0.92640 0.92374 0.92354 0.90702 0.91494 0.89828 0.92942 0.91762 0.87998 0.76567 0.92034 0.91826 0.91339 0.92929 0.92099 0.96506 0.92745 0.93699 0.89595 0.96587 0.93638 0.92593 0.93346 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.30 37.16 0.35 -0.45 16 2 C -0.10 -0.74 3.63 -88.48 -0.32 -1.06 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.14 -1.12 6.41 -24.91 -0.16 -1.28 16 5 C 0.05 0.55 5.65 -2.84 -0.02 0.53 16 6 N -0.51 -5.53 4.85 -232.69 -1.13 -6.66 16 7 C 0.03 0.30 5.03 -4.97 -0.03 0.28 16 8 C 0.51 6.80 7.48 -10.98 -0.08 6.72 16 9 O -0.53 -9.08 15.54 5.56 0.09 -8.99 16 10 N -0.73 -9.05 5.27 -60.29 -0.32 -9.37 16 11 C 0.13 1.80 5.06 -4.04 -0.02 1.78 16 12 C -0.09 -1.41 2.19 -90.58 -0.20 -1.61 16 13 C -0.12 -2.10 5.36 -26.62 -0.14 -2.24 16 14 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 15 N -0.59 -14.61 3.00 -172.58 -0.52 -15.12 16 16 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 17 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 18 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 19 N -0.90 -25.97 11.20 55.49 0.62 -25.34 16 20 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.17 3.93 5.27 -3.93 -0.02 3.91 16 25 C -0.13 -2.39 5.23 -26.83 -0.14 -2.53 16 26 C 0.05 0.37 6.15 -2.30 -0.01 0.36 16 27 H 0.05 0.31 8.10 -51.93 -0.42 -0.11 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.59 7.31 -51.93 -0.38 0.21 16 34 H 0.06 0.56 7.96 -51.93 -0.41 0.14 16 35 H 0.10 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.40 4.18 7.65 -40.82 -0.31 3.87 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 1.10 7.93 -51.92 -0.41 0.69 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.04 0.70 7.15 -51.93 -0.37 0.33 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 49 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 50 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -31.57 384.70 -10.87 -42.44 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -9.33 Total: 0.36 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -1.05 Total: 0.33 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -1.34 Total: -56.49 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.57 -10.87 -42.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565188048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.156 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds