Wall clock time and date at job start Fri Apr 10 2020 22:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58212 * 2 1 4 4 C 1.53192 * 109.59232 * 239.57241 * 2 1 3 5 5 C 1.53032 * 109.31585 * 185.57760 * 4 2 1 6 6 C 1.53042 * 109.53817 * 61.36496 * 5 4 2 7 7 C 1.53621 * 109.24179 * 298.51202 * 6 5 4 8 8 N 1.46928 * 108.54703 * 54.85544 * 7 6 5 9 9 C 1.34771 * 120.62989 * 126.36749 * 8 7 6 10 10 O 1.21586 * 119.99682 * 174.26309 * 9 8 7 11 11 N 1.34774 * 120.00488 * 354.26064 * 9 8 7 12 12 C 1.46493 * 120.00156 * 184.87188 * 11 9 8 13 13 C 1.53001 * 109.47038 * 180.02562 * 12 11 9 14 14 C 1.53049 * 109.45926 * 185.00024 * 13 12 11 15 15 C 1.53191 * 109.33810 * 178.62800 * 14 13 12 16 16 N 1.46929 * 108.77567 * 54.61676 * 15 14 13 17 17 C 1.36933 * 120.62862 * 126.41239 * 16 15 14 18 18 H 1.08006 * 119.99855 * 210.60246 * 17 16 15 19 19 C 1.38809 * 120.00517 * 30.60082 * 17 16 15 20 20 N 1.31624 * 119.99730 * 9.83615 * 19 17 16 21 21 Si 1.86803 * 120.00675 * 189.83650 * 19 17 16 22 22 H 1.48495 * 109.46780 * 59.99828 * 21 19 17 23 23 H 1.48495 * 109.47228 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46669 * 300.00071 * 21 19 17 25 25 C 1.46924 * 118.74170 * 306.39254 * 16 15 14 26 26 C 1.53033 * 109.48820 * 64.91314 * 13 12 11 27 27 H 1.08994 * 109.47528 * 306.95532 * 1 2 3 28 28 H 1.09005 * 109.46893 * 66.95672 * 1 2 3 29 29 H 1.08999 * 109.46972 * 186.95128 * 1 2 3 30 30 H 1.09007 * 109.49426 * 305.53329 * 4 2 1 31 31 H 1.09002 * 109.49477 * 65.62294 * 4 2 1 32 32 H 1.08996 * 109.46135 * 181.38622 * 5 4 2 33 33 H 1.08998 * 109.45993 * 301.36093 * 5 4 2 34 34 H 1.08999 * 109.49836 * 58.58643 * 6 5 4 35 35 H 1.08998 * 109.49681 * 178.65051 * 6 5 4 36 36 H 1.09001 * 109.73803 * 295.11682 * 7 6 5 37 37 H 1.08998 * 109.67024 * 174.55124 * 7 6 5 38 38 H 0.96996 * 119.99266 * 4.87318 * 11 9 8 39 39 H 1.08998 * 109.47361 * 60.00279 * 12 11 9 40 40 H 1.08998 * 109.47124 * 300.00043 * 12 11 9 41 41 H 1.09005 * 109.44536 * 304.96125 * 13 12 11 42 42 H 1.08997 * 109.49637 * 58.66041 * 14 13 12 43 43 H 1.08993 * 109.49681 * 298.59554 * 14 13 12 44 44 H 1.09000 * 109.58475 * 174.40498 * 15 14 13 45 45 H 1.08997 * 109.58520 * 294.68991 * 15 14 13 46 46 H 0.97001 * 120.00473 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.59003 * 173.39241 * 25 16 15 48 48 H 1.09004 * 109.58689 * 293.68188 * 25 16 15 49 49 H 1.09001 * 109.47381 * 61.40461 * 26 13 12 50 50 H 1.08997 * 109.52757 * 301.33848 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0437 -0.7309 -1.2444 5 6 3.5675 -0.8494 -1.1690 6 6 3.9569 -1.6656 0.0657 7 6 3.4656 -0.9403 1.3276 8 7 2.0224 -0.6980 1.1954 9 6 1.1674 -1.1034 2.1550 10 8 -0.0096 -0.8064 2.0855 11 7 1.6168 -1.8382 3.1917 12 6 0.6721 -2.3689 4.1774 13 6 1.4359 -3.1595 5.2417 14 6 0.4406 -3.8174 6.2003 15 6 1.2069 -4.6360 7.2440 16 7 2.1902 -3.7635 7.9003 17 6 2.2233 -3.6523 9.2647 18 1 2.5437 -2.7286 9.7236 19 6 1.8451 -4.7267 10.0581 20 7 1.6416 -5.9075 9.5135 21 14 1.6248 -4.4968 11.8988 22 1 0.5728 -3.4788 12.1481 23 1 1.2219 -5.7868 12.5141 24 1 2.9055 -4.0420 12.4975 25 6 3.1377 -3.0131 7.0649 26 6 2.3497 -2.2128 6.0231 27 1 -0.3634 0.6178 0.8211 28 1 -0.3633 0.4023 -0.9457 29 1 -0.3633 -1.0201 0.1244 30 1 1.6030 -1.7269 -1.2891 31 1 1.7661 -0.1695 -2.1366 32 1 3.9379 -1.3473 -2.0650 33 1 4.0061 0.1460 -1.0991 34 1 3.4983 -2.6527 0.0087 35 1 5.0412 -1.7698 0.1057 36 1 3.9877 0.0108 1.4324 37 1 3.6531 -1.5608 2.2039 38 1 2.5659 -2.0155 3.2849 39 1 -0.0420 -3.0250 3.6798 40 1 0.1392 -1.5442 4.6507 41 1 2.0384 -3.9292 4.7592 42 1 -0.2246 -4.4741 5.6396 43 1 -0.1458 -3.0471 6.7009 44 1 0.5103 -5.0249 7.9867 45 1 1.7193 -5.4642 6.7546 46 1 1.3776 -6.6584 10.0679 47 1 3.7149 -2.3313 7.6894 48 1 3.8112 -3.7074 6.5624 49 1 1.7458 -1.4571 6.5255 50 1 3.0433 -1.7269 5.3368 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594457585.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:21:25 Heat of formation + Delta-G solvation = -8.347444 kcal Electronic energy + Delta-G solvation = -26768.669858 eV Core-core repulsion = 23217.284100 eV Total energy + Delta-G solvation = -3551.385758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.74479 -38.25572 -37.35759 -35.16563 -33.48270 -32.86785 -32.10844 -30.62711 -29.65266 -27.73096 -26.61056 -24.81263 -23.97550 -22.43295 -22.14157 -21.29790 -20.84938 -19.76853 -19.00294 -17.83909 -16.71103 -16.40885 -15.74403 -14.91976 -14.80978 -14.79116 -14.71106 -14.22257 -14.12170 -13.68806 -13.62990 -13.45977 -13.34101 -13.03268 -12.62566 -12.39308 -12.23792 -12.20179 -11.96206 -11.80042 -11.35209 -11.26055 -11.24794 -11.01802 -10.92810 -10.89274 -10.72688 -10.48326 -10.21576 -10.18037 -9.90601 -9.52601 -9.47647 -9.24531 -8.95220 -8.54806 -8.46151 -6.60898 -5.76416 -3.24197 2.59455 3.23838 3.38875 3.44126 3.45232 3.85019 4.43316 4.49816 4.50342 4.52732 4.72664 4.95905 5.04671 5.12375 5.18768 5.27653 5.32547 5.38995 5.42708 5.45025 5.52070 5.55264 5.63839 5.66204 5.70926 5.73885 5.92782 5.93672 5.98447 6.08848 6.15084 6.18388 6.26621 6.35113 6.47613 6.56048 6.63377 6.66801 6.76076 6.80160 6.84601 6.91617 7.01204 7.42749 7.73190 7.80133 7.97823 8.49786 8.66241 9.24535 9.86248 10.43812 11.31233 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.031820 B = 0.002635 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.726495 B =10623.306447 C =10992.835689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.132 4.132 5 C -0.119 4.119 6 C -0.136 4.136 7 C 0.111 3.889 8 N -0.630 5.630 9 C 0.705 3.295 10 O -0.585 6.585 11 N -0.742 5.742 12 C 0.142 3.858 13 C -0.089 4.089 14 C -0.133 4.133 15 C 0.171 3.829 16 N -0.593 5.593 17 C -0.251 4.251 18 H 0.063 0.937 19 C 0.002 3.998 20 N -0.907 5.907 21 Si 0.905 3.095 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.145 3.855 26 C -0.125 4.125 27 H 0.078 0.922 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.393 0.607 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.092 0.908 45 H 0.016 0.984 46 H 0.254 0.746 47 H 0.052 0.948 48 H 0.015 0.985 49 H 0.059 0.941 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.812 9.557 -21.439 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.084 0.916 4 C -0.171 4.171 5 C -0.157 4.157 6 C -0.174 4.174 7 C -0.013 4.013 8 N -0.369 5.369 9 C 0.407 3.593 10 O -0.464 6.464 11 N -0.400 5.400 12 C 0.018 3.982 13 C -0.109 4.109 14 C -0.173 4.173 15 C 0.046 3.954 16 N -0.316 5.316 17 C -0.381 4.381 18 H 0.081 0.919 19 C -0.196 4.196 20 N -0.552 5.552 21 Si 0.735 3.265 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.019 3.981 26 C -0.165 4.165 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.230 0.770 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.110 0.890 45 H 0.034 0.966 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.033 0.967 49 H 0.078 0.922 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.881 9.588 -21.364 23.594 hybrid contribution 0.524 -0.100 0.959 1.098 sum 3.405 9.488 -20.405 22.759 Atomic orbital electron populations 1.22168 0.92468 1.04200 1.00437 1.21069 0.95880 0.94363 0.82889 0.91566 1.22035 0.95855 1.01566 0.97615 1.21504 0.95869 1.00398 0.97892 1.21998 1.01162 0.99586 0.94658 1.21713 0.80956 1.00275 0.98320 1.47347 1.06236 1.62280 1.21005 1.15943 0.84804 0.78845 0.79745 1.90952 1.15714 1.61584 1.78116 1.45560 1.11108 1.56408 1.26914 1.21415 0.91142 0.97350 0.88271 1.21308 0.97553 0.97231 0.94759 1.22191 0.97477 0.99934 0.97666 1.20808 0.91689 0.89981 0.92952 1.44012 1.33859 1.51632 1.02062 1.19148 1.41549 0.95986 0.81419 0.91916 1.25147 1.01592 0.94819 0.98024 1.69951 1.51064 0.99625 1.34530 0.86329 0.78132 0.76783 0.85244 1.20991 1.21602 1.20918 1.20894 0.91432 0.93706 0.92074 1.22056 0.98329 0.98099 0.97998 0.90359 0.94217 0.91424 0.91462 0.90862 0.91710 0.91795 0.91337 0.90688 0.91305 0.90324 0.77039 0.92189 0.91823 0.91524 0.93124 0.92441 0.88989 0.96583 0.93564 0.92985 0.96679 0.92200 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 7.61 37.16 0.28 -1.27 16 2 C 0.16 1.57 3.49 -67.60 -0.24 1.33 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.13 -1.00 5.37 -26.62 -0.14 -1.15 16 5 C -0.12 -0.75 5.88 -26.69 -0.16 -0.91 16 6 C -0.14 -0.91 6.10 -26.39 -0.16 -1.07 16 7 C 0.11 0.88 6.46 -3.49 -0.02 0.86 16 8 N -0.63 -6.83 2.97 -170.65 -0.51 -7.33 16 9 C 0.70 9.89 8.10 -86.93 -0.70 9.18 16 10 O -0.58 -10.00 11.91 5.29 0.06 -9.94 16 11 N -0.74 -9.67 5.19 -65.23 -0.34 -10.01 16 12 C 0.14 2.10 5.07 -4.05 -0.02 2.08 16 13 C -0.09 -1.43 2.19 -90.58 -0.20 -1.63 16 14 C -0.13 -2.49 5.36 -26.61 -0.14 -2.64 16 15 C 0.17 4.05 5.26 -3.71 -0.02 4.03 16 16 N -0.59 -14.73 2.99 -172.32 -0.52 -15.25 16 17 C -0.25 -6.88 9.59 -15.06 -0.14 -7.03 16 18 H 0.06 1.69 7.85 -52.48 -0.41 1.28 16 19 C 0.00 0.07 5.08 -17.43 -0.09 -0.02 16 20 N -0.91 -26.21 10.94 55.49 0.61 -25.60 16 21 Si 0.91 21.71 29.57 -169.99 -5.03 16.69 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16 26 C -0.13 -2.09 5.25 -26.61 -0.14 -2.23 16 27 H 0.08 1.07 6.65 -51.93 -0.35 0.73 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.92 6.84 -51.93 -0.36 0.56 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.60 5.56 -51.93 -0.29 0.31 16 38 H 0.39 4.36 5.11 -40.82 -0.21 4.16 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.09 2.46 6.01 -51.93 -0.31 2.14 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 48 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.04 0.62 7.15 -51.93 -0.37 0.25 16 LS Contribution 372.03 15.07 5.61 5.61 Total: -1.00 -30.94 372.03 -11.06 -42.00 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -9.03 Total: 1.35 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.92 Total: 2.49 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.75 Total: -58.19 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.06 Total: -9.94 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.94 -11.06 -42.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594457585.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.650 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds