Wall clock time and date at job start Fri Apr 10 2020 22:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58212 * 2 1 4 4 C 1.53192 * 109.59232 * 239.57241 * 2 1 3 5 5 C 1.53032 * 109.31585 * 185.57760 * 4 2 1 6 6 C 1.53042 * 109.53817 * 61.36496 * 5 4 2 7 7 C 1.53621 * 109.24179 * 298.51202 * 6 5 4 8 8 N 1.46928 * 108.54703 * 54.85544 * 7 6 5 9 9 C 1.34771 * 120.62989 * 126.36749 * 8 7 6 10 10 O 1.21586 * 119.99682 * 174.26309 * 9 8 7 11 11 N 1.34774 * 120.00488 * 354.26064 * 9 8 7 12 12 C 1.46493 * 120.00156 * 184.87188 * 11 9 8 13 13 C 1.53001 * 109.47038 * 180.02562 * 12 11 9 14 14 C 1.53049 * 109.45926 * 185.00024 * 13 12 11 15 15 C 1.53191 * 109.33810 * 178.62800 * 14 13 12 16 16 N 1.46929 * 108.77567 * 54.61676 * 15 14 13 17 17 C 1.36933 * 120.62862 * 126.41239 * 16 15 14 18 18 H 1.08006 * 119.99855 * 210.60246 * 17 16 15 19 19 C 1.38809 * 120.00517 * 30.60082 * 17 16 15 20 20 N 1.31624 * 119.99730 * 9.83615 * 19 17 16 21 21 Si 1.86803 * 120.00675 * 189.83650 * 19 17 16 22 22 H 1.48495 * 109.46780 * 59.99828 * 21 19 17 23 23 H 1.48495 * 109.47228 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46669 * 300.00071 * 21 19 17 25 25 C 1.46924 * 118.74170 * 306.39254 * 16 15 14 26 26 C 1.53033 * 109.48820 * 64.91314 * 13 12 11 27 27 H 1.08994 * 109.47528 * 306.95532 * 1 2 3 28 28 H 1.09005 * 109.46893 * 66.95672 * 1 2 3 29 29 H 1.08999 * 109.46972 * 186.95128 * 1 2 3 30 30 H 1.09007 * 109.49426 * 305.53329 * 4 2 1 31 31 H 1.09002 * 109.49477 * 65.62294 * 4 2 1 32 32 H 1.08996 * 109.46135 * 181.38622 * 5 4 2 33 33 H 1.08998 * 109.45993 * 301.36093 * 5 4 2 34 34 H 1.08999 * 109.49836 * 58.58643 * 6 5 4 35 35 H 1.08998 * 109.49681 * 178.65051 * 6 5 4 36 36 H 1.09001 * 109.73803 * 295.11682 * 7 6 5 37 37 H 1.08998 * 109.67024 * 174.55124 * 7 6 5 38 38 H 0.96996 * 119.99266 * 4.87318 * 11 9 8 39 39 H 1.08998 * 109.47361 * 60.00279 * 12 11 9 40 40 H 1.08998 * 109.47124 * 300.00043 * 12 11 9 41 41 H 1.09005 * 109.44536 * 304.96125 * 13 12 11 42 42 H 1.08997 * 109.49637 * 58.66041 * 14 13 12 43 43 H 1.08993 * 109.49681 * 298.59554 * 14 13 12 44 44 H 1.09000 * 109.58475 * 174.40498 * 15 14 13 45 45 H 1.08997 * 109.58520 * 294.68991 * 15 14 13 46 46 H 0.97001 * 120.00473 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.59003 * 173.39241 * 25 16 15 48 48 H 1.09004 * 109.58689 * 293.68188 * 25 16 15 49 49 H 1.09001 * 109.47381 * 61.40461 * 26 13 12 50 50 H 1.08997 * 109.52757 * 301.33848 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0437 -0.7309 -1.2444 5 6 3.5675 -0.8494 -1.1690 6 6 3.9569 -1.6656 0.0657 7 6 3.4656 -0.9403 1.3276 8 7 2.0224 -0.6980 1.1954 9 6 1.1674 -1.1034 2.1550 10 8 -0.0096 -0.8064 2.0855 11 7 1.6168 -1.8382 3.1917 12 6 0.6721 -2.3689 4.1774 13 6 1.4359 -3.1595 5.2417 14 6 0.4406 -3.8174 6.2003 15 6 1.2069 -4.6360 7.2440 16 7 2.1902 -3.7635 7.9003 17 6 2.2233 -3.6523 9.2647 18 1 2.5437 -2.7286 9.7236 19 6 1.8451 -4.7267 10.0581 20 7 1.6416 -5.9075 9.5135 21 14 1.6248 -4.4968 11.8988 22 1 0.5728 -3.4788 12.1481 23 1 1.2219 -5.7868 12.5141 24 1 2.9055 -4.0420 12.4975 25 6 3.1377 -3.0131 7.0649 26 6 2.3497 -2.2128 6.0231 27 1 -0.3634 0.6178 0.8211 28 1 -0.3633 0.4023 -0.9457 29 1 -0.3633 -1.0201 0.1244 30 1 1.6030 -1.7269 -1.2891 31 1 1.7661 -0.1695 -2.1366 32 1 3.9379 -1.3473 -2.0650 33 1 4.0061 0.1460 -1.0991 34 1 3.4983 -2.6527 0.0087 35 1 5.0412 -1.7698 0.1057 36 1 3.9877 0.0108 1.4324 37 1 3.6531 -1.5608 2.2039 38 1 2.5659 -2.0155 3.2849 39 1 -0.0420 -3.0250 3.6798 40 1 0.1392 -1.5442 4.6507 41 1 2.0384 -3.9292 4.7592 42 1 -0.2246 -4.4741 5.6396 43 1 -0.1458 -3.0471 6.7009 44 1 0.5103 -5.0249 7.9867 45 1 1.7193 -5.4642 6.7546 46 1 1.3776 -6.6584 10.0679 47 1 3.7149 -2.3313 7.6894 48 1 3.8112 -3.7074 6.5624 49 1 1.7458 -1.4571 6.5255 50 1 3.0433 -1.7269 5.3368 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594457585.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:21:24 Heat of formation + Delta-G solvation = -25.904573 kcal Electronic energy + Delta-G solvation = -26769.431192 eV Core-core repulsion = 23217.284100 eV Total energy + Delta-G solvation = -3552.147092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.69071 -39.61241 -38.41348 -36.53077 -34.86696 -33.68087 -33.31896 -32.21756 -31.32889 -28.68699 -28.01595 -25.91918 -25.29675 -23.82822 -23.30752 -22.42149 -21.94439 -20.91140 -20.36818 -18.84896 -18.53275 -17.37762 -16.90036 -16.65374 -15.89749 -15.75583 -15.53078 -15.39125 -15.28266 -15.04479 -14.88771 -14.80166 -14.50572 -14.20783 -13.93970 -13.76012 -13.43317 -13.29655 -13.13731 -12.96400 -12.76389 -12.64200 -12.56739 -12.28645 -12.02154 -11.98504 -11.89653 -11.83878 -11.62055 -11.57391 -11.46887 -11.20089 -11.09607 -10.53714 -10.32021 -10.06865 -9.39836 -8.61306 -7.84908 -5.35486 1.46838 1.48940 1.55509 1.67195 2.18633 2.51418 2.94697 3.29969 3.72848 3.82934 3.84043 3.89858 3.93554 3.99171 4.08423 4.11995 4.32648 4.38704 4.53215 4.54392 4.55185 4.66612 4.70191 4.75519 4.78134 4.81152 4.86383 4.95765 4.98013 5.02245 5.06980 5.12054 5.14397 5.20418 5.27104 5.29815 5.30751 5.36708 5.42960 5.48896 5.56122 5.61222 5.66846 5.76092 5.83279 5.98694 6.43418 7.01192 7.18019 7.62918 7.89082 8.40283 9.20111 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.031820 B = 0.002635 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.726495 B =10623.306447 C =10992.835689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.080 0.920 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.132 4.132 7 C 0.104 3.896 8 N -0.627 5.627 9 C 0.697 3.303 10 O -0.622 6.622 11 N -0.735 5.735 12 C 0.158 3.842 13 C -0.076 4.076 14 C -0.122 4.122 15 C 0.178 3.822 16 N -0.613 5.613 17 C -0.263 4.263 18 H 0.064 0.936 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.968 3.032 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.275 1.275 25 C 0.141 3.859 26 C -0.112 4.112 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.404 0.596 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.048 0.952 44 H 0.055 0.945 45 H -0.002 1.002 46 H 0.250 0.750 47 H 0.051 0.949 48 H 0.019 0.981 49 H 0.048 0.952 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.455 11.008 -23.147 26.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.098 0.902 4 C -0.165 4.165 5 C -0.154 4.154 6 C -0.171 4.171 7 C -0.018 4.018 8 N -0.364 5.364 9 C 0.399 3.601 10 O -0.504 6.504 11 N -0.394 5.394 12 C 0.033 3.967 13 C -0.095 4.095 14 C -0.162 4.162 15 C 0.052 3.948 16 N -0.337 5.337 17 C -0.393 4.393 18 H 0.082 0.918 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.796 3.204 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.201 1.201 25 C 0.016 3.984 26 C -0.151 4.151 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.243 0.757 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.016 0.984 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.037 0.963 49 H 0.067 0.933 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.581 11.066 -23.110 26.029 hybrid contribution 0.044 -0.523 1.435 1.528 sum 4.625 10.543 -21.675 24.543 Atomic orbital electron populations 1.21998 0.94100 1.01966 1.00380 1.21234 0.94609 0.95396 0.83434 0.90177 1.21987 0.96888 1.00609 0.96978 1.21511 0.94613 1.01118 0.98161 1.21987 1.02213 0.98732 0.94128 1.21978 0.79082 1.01443 0.99304 1.47454 1.07212 1.61411 1.20343 1.16159 0.84726 0.78925 0.80303 1.90946 1.17507 1.62933 1.78984 1.45350 1.11370 1.56233 1.26431 1.21058 0.91038 0.96559 0.88037 1.21130 0.96794 0.97274 0.94327 1.21990 0.97700 0.99442 0.97076 1.20584 0.91048 0.90229 0.92901 1.44294 1.35291 1.52141 1.01957 1.19482 1.40855 0.95969 0.83018 0.91845 1.25888 1.01997 0.94635 1.02093 1.70122 1.52290 1.00201 1.35677 0.85332 0.78229 0.76407 0.80405 1.20532 1.21965 1.20059 1.21069 0.91293 0.93628 0.92457 1.21900 0.98417 0.97304 0.97473 0.93087 0.92107 0.94090 0.92959 0.89204 0.90585 0.90644 0.92609 0.88711 0.89683 0.89903 0.75695 0.92550 0.93126 0.90661 0.91422 0.93325 0.92666 0.98417 0.94121 0.93023 0.96291 0.93334 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 7.61 71.98 0.55 -2.32 16 2 C 0.16 2.75 3.49 44.97 0.16 2.91 16 3 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.13 -1.61 5.37 30.67 0.16 -1.45 16 5 C -0.12 -1.08 5.88 30.62 0.18 -0.90 16 6 C -0.13 -1.36 6.10 30.82 0.19 -1.17 16 7 C 0.10 1.34 6.46 86.51 0.56 1.90 16 8 N -0.63 -12.43 2.97 -812.07 -2.41 -14.84 16 9 C 0.70 18.86 8.10 179.06 1.45 20.31 16 10 O -0.62 -21.43 11.91 -3.99 -0.05 -21.48 16 11 N -0.74 -17.83 5.19 -478.56 -2.48 -20.31 16 12 C 0.16 4.46 5.07 86.38 0.44 4.90 16 13 C -0.08 -2.33 2.19 -10.77 -0.02 -2.35 16 14 C -0.12 -4.58 5.36 30.67 0.16 -4.41 16 15 C 0.18 8.60 5.26 86.36 0.45 9.05 16 16 N -0.61 -30.74 2.99 -699.09 -2.09 -32.83 16 17 C -0.26 -14.56 9.59 84.03 0.81 -13.75 16 18 H 0.06 3.42 7.85 -2.91 -0.02 3.40 16 19 C -0.05 -2.87 5.08 84.86 0.43 -2.44 16 20 N -0.94 -55.60 10.94 21.65 0.24 -55.37 16 21 Si 0.97 45.20 29.57 68.60 2.03 47.22 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 C 0.14 5.61 6.52 86.36 0.56 6.17 16 26 C -0.11 -3.51 5.25 30.67 0.16 -3.35 16 27 H 0.05 1.42 6.65 -2.39 -0.02 1.41 16 28 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.04 1.13 6.84 -2.39 -0.02 1.12 16 30 H 0.05 0.83 8.14 -2.38 -0.02 0.82 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.99 5.56 -2.39 -0.01 0.97 16 38 H 0.40 7.83 5.11 -92.71 -0.47 7.36 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 42 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.05 3.06 6.01 -2.39 -0.01 3.05 16 45 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 46 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 47 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 48 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 49 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.08 1.98 7.15 -2.39 -0.02 1.96 16 Total: -1.00 -69.21 372.03 1.90 -67.30 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.43 Total: 17.19 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 6.24 Total: 13.11 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -6.75 Total: -123.35 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.05 Total: -21.48 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -69.21 1.90 -67.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594457585.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.400 kcal (2) G-P(sol) polarization free energy of solvation -69.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds