Wall clock time and date at job start Fri Apr 10 2020 22:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.70375 * 2 1 4 4 C 1.53624 * 109.66745 * 120.59510 * 2 1 3 5 5 C 1.53040 * 109.24207 * 174.55313 * 4 2 1 6 6 C 1.53044 * 109.53726 * 298.50780 * 5 4 2 7 7 C 1.53195 * 109.31102 * 61.36715 * 6 5 4 8 8 N 1.46924 * 108.77451 * 305.36678 * 7 6 5 9 9 C 1.34784 * 120.62661 * 233.58154 * 8 7 6 10 10 O 1.21585 * 119.99503 * 185.59827 * 9 8 7 11 11 N 1.34770 * 119.99890 * 5.60771 * 9 8 7 12 12 C 1.46508 * 119.99908 * 174.95093 * 11 9 8 13 13 C 1.52998 * 109.47274 * 179.97438 * 12 11 9 14 14 C 1.53037 * 109.45853 * 185.00106 * 13 12 11 15 15 C 1.53200 * 109.31112 * 178.61578 * 14 13 12 16 16 N 1.46927 * 108.77360 * 54.63054 * 15 14 13 17 17 C 1.36940 * 120.62761 * 126.41616 * 16 15 14 18 18 H 1.08002 * 120.00027 * 331.54845 * 17 16 15 19 19 C 1.38809 * 120.00392 * 151.54728 * 17 16 15 20 20 N 1.31628 * 119.99371 * 341.81792 * 19 17 16 21 21 Si 1.86789 * 120.00449 * 161.81643 * 19 17 16 22 22 H 1.48498 * 109.47296 * 94.98588 * 21 19 17 23 23 H 1.48507 * 109.47214 * 214.98932 * 21 19 17 24 24 H 1.48502 * 109.46948 * 334.98663 * 21 19 17 25 25 C 1.46918 * 118.74103 * 306.39078 * 16 15 14 26 26 C 1.53041 * 109.45963 * 64.92856 * 13 12 11 27 27 H 1.09002 * 109.46626 * 172.72712 * 1 2 3 28 28 H 1.09002 * 109.46955 * 292.72414 * 1 2 3 29 29 H 1.09001 * 109.47288 * 52.72791 * 1 2 3 30 30 H 1.08997 * 109.63414 * 54.55866 * 4 2 1 31 31 H 1.09005 * 109.43077 * 294.41721 * 4 2 1 32 32 H 1.09001 * 109.46219 * 178.49381 * 5 4 2 33 33 H 1.08993 * 109.45378 * 58.52393 * 5 4 2 34 34 H 1.09006 * 109.50100 * 301.41832 * 6 5 4 35 35 H 1.08998 * 109.52526 * 181.33679 * 6 5 4 36 36 H 1.08998 * 109.58574 * 185.57752 * 7 6 5 37 37 H 1.09002 * 109.70029 * 65.22097 * 7 6 5 38 38 H 0.96996 * 120.00698 * 354.94344 * 11 9 8 39 39 H 1.09001 * 109.46853 * 59.99353 * 12 11 9 40 40 H 1.08997 * 109.46809 * 299.99703 * 12 11 9 41 41 H 1.09003 * 109.44996 * 304.96503 * 13 12 11 42 42 H 1.08999 * 109.49965 * 58.66384 * 14 13 12 43 43 H 1.08999 * 109.49782 * 298.55958 * 14 13 12 44 44 H 1.08996 * 109.58365 * 174.41858 * 15 14 13 45 45 H 1.08995 * 109.58260 * 294.84724 * 15 14 13 46 46 H 0.96998 * 119.99620 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.58666 * 173.39554 * 25 16 15 48 48 H 1.08994 * 109.59035 * 293.82092 * 25 16 15 49 49 H 1.09000 * 109.49359 * 61.43645 * 26 13 12 50 50 H 1.09002 * 109.49904 * 301.34017 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7363 1.2452 5 6 3.5712 -0.8497 1.1675 6 6 3.9616 -1.6626 -0.0690 7 6 3.4657 -0.9418 -1.3265 8 7 2.0226 -0.6994 -1.1945 9 6 1.1675 -1.1060 -2.1537 10 8 -0.0100 -0.8110 -2.0832 11 7 1.6175 -1.8396 -3.1908 12 6 0.6726 -2.3750 -4.1741 13 6 1.4371 -3.1631 -5.2396 14 6 0.4666 -3.6164 -6.3327 15 6 1.2411 -4.3753 -7.4149 16 7 1.9901 -5.4691 -6.7813 17 6 1.8574 -6.7565 -7.2289 18 1 0.9348 -7.0750 -7.6912 19 6 2.9086 -7.6520 -7.0885 20 7 4.1275 -7.2066 -6.8681 21 14 2.5936 -9.4890 -7.2124 22 1 2.8575 -9.9439 -8.6012 23 1 3.4931 -10.2097 -6.2760 24 1 1.1798 -9.7737 -6.8585 25 6 2.8845 -5.1553 -5.6587 26 6 2.0916 -4.3878 -4.5962 27 1 -0.3633 -1.0194 -0.1301 28 1 -0.3633 0.3970 0.9479 29 1 -0.3634 0.6224 -0.8178 30 1 1.6097 -1.7337 1.2889 31 1 1.7689 -0.1772 2.1387 32 1 3.9444 -1.3480 2.0623 33 1 4.0063 0.1473 1.0989 34 1 3.5062 -2.6514 -0.0130 35 1 5.0461 -1.7634 -0.1112 36 1 3.6532 -1.5635 -2.2019 37 1 3.9875 0.0090 -1.4349 38 1 2.5671 -2.0131 -3.2864 39 1 0.1351 -1.5528 -4.6466 40 1 -0.0376 -3.0336 -3.6743 41 1 2.2070 -2.5282 -5.6781 42 1 -0.0165 -2.7450 -6.7745 43 1 -0.2892 -4.2715 -5.8994 44 1 0.5427 -4.7853 -8.1444 45 1 1.9350 -3.6969 -7.9112 46 1 4.8622 -7.8323 -6.7703 47 1 3.2704 -6.0800 -5.2295 48 1 3.7123 -4.5406 -6.0119 49 1 1.3204 -5.0355 -4.1792 50 1 2.7650 -4.0653 -3.8020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594457586.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:21:28 Heat of formation + Delta-G solvation = -8.521558 kcal Electronic energy + Delta-G solvation = -26921.181383 eV Core-core repulsion = 23369.788075 eV Total energy + Delta-G solvation = -3551.393308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.71561 -38.24917 -37.34743 -35.15337 -33.46753 -32.83973 -32.12585 -30.45196 -29.84341 -27.71725 -26.59732 -24.76921 -23.95490 -22.38660 -22.18975 -21.27193 -20.85815 -19.72422 -19.03059 -17.79886 -16.72799 -16.38630 -15.74521 -14.87236 -14.79805 -14.71266 -14.62559 -14.25980 -14.08916 -13.82565 -13.59157 -13.51298 -13.25153 -12.93109 -12.58824 -12.44883 -12.29014 -12.19345 -11.91468 -11.77827 -11.36829 -11.25718 -11.21468 -11.00187 -10.95342 -10.85723 -10.70013 -10.50295 -10.21994 -10.21142 -9.90603 -9.58300 -9.42459 -9.24066 -8.93221 -8.52066 -8.46308 -6.66064 -5.79684 -3.20912 2.62132 3.25985 3.36893 3.44419 3.47482 3.87766 4.48258 4.50165 4.55568 4.58074 4.77150 4.99830 5.09094 5.13664 5.20786 5.29023 5.35959 5.38274 5.42587 5.45829 5.56343 5.58737 5.62758 5.69899 5.76413 5.78914 5.91897 5.98145 5.99068 6.06683 6.17177 6.18491 6.28590 6.31440 6.47440 6.56408 6.62703 6.67823 6.72049 6.77991 6.84707 6.93548 7.00376 7.35437 7.62106 7.80236 8.00083 8.45362 8.68005 9.21573 9.85419 10.42566 11.29042 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.020043 B = 0.003046 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.684844 B = 9191.488418 C = 9993.419837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.133 4.133 5 C -0.119 4.119 6 C -0.136 4.136 7 C 0.111 3.889 8 N -0.630 5.630 9 C 0.705 3.295 10 O -0.587 6.587 11 N -0.742 5.742 12 C 0.143 3.857 13 C -0.090 4.090 14 C -0.124 4.124 15 C 0.146 3.854 16 N -0.592 5.592 17 C -0.252 4.252 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.172 3.828 26 C -0.133 4.133 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.394 0.606 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.054 0.946 45 H 0.017 0.983 46 H 0.253 0.747 47 H 0.083 0.917 48 H 0.016 0.984 49 H 0.056 0.944 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 14.954 14.689 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.084 0.916 4 C -0.171 4.171 5 C -0.156 4.156 6 C -0.175 4.175 7 C -0.013 4.013 8 N -0.368 5.368 9 C 0.407 3.593 10 O -0.465 6.465 11 N -0.400 5.400 12 C 0.019 3.981 13 C -0.109 4.109 14 C -0.164 4.164 15 C 0.020 3.980 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.046 3.954 26 C -0.172 4.172 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.231 0.769 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.035 0.965 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.034 0.966 49 H 0.075 0.925 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.301 15.035 14.731 21.089 hybrid contribution 0.612 -1.102 -0.077 1.263 sum -0.690 13.933 14.654 20.233 Atomic orbital electron populations 1.22160 0.92483 1.04262 1.00317 1.21164 0.95831 0.94286 0.82909 0.91563 1.22113 0.95882 1.01555 0.97549 1.21503 0.95823 1.00358 0.97946 1.21927 1.01256 0.99720 0.94579 1.21626 0.80865 1.00255 0.98504 1.47352 1.06281 1.62160 1.21037 1.15933 0.84782 0.78801 0.79753 1.90944 1.15658 1.61790 1.78153 1.45540 1.11109 1.56219 1.27096 1.21383 0.91240 0.96805 0.88678 1.21305 0.97966 0.96661 0.95005 1.21978 0.97937 0.99337 0.97131 1.20889 0.93914 0.90314 0.92913 1.44048 1.50459 1.03084 1.33920 1.19180 0.96830 0.86041 1.36103 0.91770 1.25031 0.94689 0.98564 1.01362 1.70054 0.98291 1.33130 1.53202 0.86319 0.77588 0.85659 0.77472 1.21486 1.21580 1.20405 1.20728 0.90090 0.98305 0.86237 1.22235 0.99817 0.96353 0.98843 0.91326 0.94230 0.90483 0.91400 0.90923 0.91690 0.91846 0.91222 0.90591 0.90280 0.91390 0.76894 0.92161 0.92021 0.91453 0.92912 0.92061 0.92741 0.96548 0.93731 0.89829 0.96559 0.92525 0.93808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 7.62 37.16 0.28 -1.29 16 2 C 0.16 1.63 3.51 -67.38 -0.24 1.39 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 4 C -0.13 -1.09 5.40 -26.39 -0.14 -1.23 16 5 C -0.12 -0.84 5.88 -26.69 -0.16 -0.99 16 6 C -0.14 -1.05 6.08 -26.61 -0.16 -1.21 16 7 C 0.11 0.96 6.43 -3.71 -0.02 0.94 16 8 N -0.63 -7.11 2.97 -170.65 -0.51 -7.62 16 9 C 0.71 10.10 8.10 -86.92 -0.70 9.40 16 10 O -0.59 -10.06 11.91 5.29 0.06 -10.00 16 11 N -0.74 -9.95 5.19 -65.22 -0.34 -10.29 16 12 C 0.14 2.09 5.07 -4.04 -0.02 2.07 16 13 C -0.09 -1.43 2.19 -90.58 -0.20 -1.63 16 14 C -0.12 -2.10 5.36 -26.61 -0.14 -2.24 16 15 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 16 N -0.59 -14.64 2.99 -172.33 -0.52 -15.15 16 17 C -0.25 -6.89 9.57 -15.06 -0.14 -7.03 16 18 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 19 C 0.00 0.06 4.88 -17.43 -0.09 -0.03 16 20 N -0.90 -25.93 11.30 55.49 0.63 -25.31 16 21 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 26 C -0.13 -2.41 5.25 -26.61 -0.14 -2.55 16 27 H 0.07 0.96 6.81 -51.93 -0.35 0.61 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 1.06 6.68 -51.93 -0.35 0.71 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.67 5.56 -51.93 -0.29 0.38 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.39 4.67 5.11 -40.82 -0.21 4.46 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.08 2.18 6.13 -51.93 -0.32 1.86 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.04 0.70 7.15 -51.93 -0.37 0.32 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -30.85 372.40 -11.04 -41.89 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -9.04 Total: 1.76 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.92 Total: 2.54 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.73 Total: -58.36 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.06 Total: -10.00 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.85 -11.04 -41.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594457586.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.368 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds