Wall clock time and date at job start Fri Apr 10 2020 22:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.70375 * 2 1 4 4 C 1.53624 * 109.66745 * 120.59510 * 2 1 3 5 5 C 1.53040 * 109.24207 * 174.55313 * 4 2 1 6 6 C 1.53044 * 109.53726 * 298.50780 * 5 4 2 7 7 C 1.53195 * 109.31102 * 61.36715 * 6 5 4 8 8 N 1.46924 * 108.77451 * 305.36678 * 7 6 5 9 9 C 1.34784 * 120.62661 * 233.58154 * 8 7 6 10 10 O 1.21585 * 119.99503 * 185.59827 * 9 8 7 11 11 N 1.34770 * 119.99890 * 5.60771 * 9 8 7 12 12 C 1.46508 * 119.99908 * 174.95093 * 11 9 8 13 13 C 1.52998 * 109.47274 * 179.97438 * 12 11 9 14 14 C 1.53037 * 109.45853 * 185.00106 * 13 12 11 15 15 C 1.53200 * 109.31112 * 178.61578 * 14 13 12 16 16 N 1.46927 * 108.77360 * 54.63054 * 15 14 13 17 17 C 1.36940 * 120.62761 * 126.41616 * 16 15 14 18 18 H 1.08002 * 120.00027 * 331.54845 * 17 16 15 19 19 C 1.38809 * 120.00392 * 151.54728 * 17 16 15 20 20 N 1.31628 * 119.99371 * 341.81792 * 19 17 16 21 21 Si 1.86789 * 120.00449 * 161.81643 * 19 17 16 22 22 H 1.48498 * 109.47296 * 94.98588 * 21 19 17 23 23 H 1.48507 * 109.47214 * 214.98932 * 21 19 17 24 24 H 1.48502 * 109.46948 * 334.98663 * 21 19 17 25 25 C 1.46918 * 118.74103 * 306.39078 * 16 15 14 26 26 C 1.53041 * 109.45963 * 64.92856 * 13 12 11 27 27 H 1.09002 * 109.46626 * 172.72712 * 1 2 3 28 28 H 1.09002 * 109.46955 * 292.72414 * 1 2 3 29 29 H 1.09001 * 109.47288 * 52.72791 * 1 2 3 30 30 H 1.08997 * 109.63414 * 54.55866 * 4 2 1 31 31 H 1.09005 * 109.43077 * 294.41721 * 4 2 1 32 32 H 1.09001 * 109.46219 * 178.49381 * 5 4 2 33 33 H 1.08993 * 109.45378 * 58.52393 * 5 4 2 34 34 H 1.09006 * 109.50100 * 301.41832 * 6 5 4 35 35 H 1.08998 * 109.52526 * 181.33679 * 6 5 4 36 36 H 1.08998 * 109.58574 * 185.57752 * 7 6 5 37 37 H 1.09002 * 109.70029 * 65.22097 * 7 6 5 38 38 H 0.96996 * 120.00698 * 354.94344 * 11 9 8 39 39 H 1.09001 * 109.46853 * 59.99353 * 12 11 9 40 40 H 1.08997 * 109.46809 * 299.99703 * 12 11 9 41 41 H 1.09003 * 109.44996 * 304.96503 * 13 12 11 42 42 H 1.08999 * 109.49965 * 58.66384 * 14 13 12 43 43 H 1.08999 * 109.49782 * 298.55958 * 14 13 12 44 44 H 1.08996 * 109.58365 * 174.41858 * 15 14 13 45 45 H 1.08995 * 109.58260 * 294.84724 * 15 14 13 46 46 H 0.96998 * 119.99620 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.58666 * 173.39554 * 25 16 15 48 48 H 1.08994 * 109.59035 * 293.82092 * 25 16 15 49 49 H 1.09000 * 109.49359 * 61.43645 * 26 13 12 50 50 H 1.09002 * 109.49904 * 301.34017 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7363 1.2452 5 6 3.5712 -0.8497 1.1675 6 6 3.9616 -1.6626 -0.0690 7 6 3.4657 -0.9418 -1.3265 8 7 2.0226 -0.6994 -1.1945 9 6 1.1675 -1.1060 -2.1537 10 8 -0.0100 -0.8110 -2.0832 11 7 1.6175 -1.8396 -3.1908 12 6 0.6726 -2.3750 -4.1741 13 6 1.4371 -3.1631 -5.2396 14 6 0.4666 -3.6164 -6.3327 15 6 1.2411 -4.3753 -7.4149 16 7 1.9901 -5.4691 -6.7813 17 6 1.8574 -6.7565 -7.2289 18 1 0.9348 -7.0750 -7.6912 19 6 2.9086 -7.6520 -7.0885 20 7 4.1275 -7.2066 -6.8681 21 14 2.5936 -9.4890 -7.2124 22 1 2.8575 -9.9439 -8.6012 23 1 3.4931 -10.2097 -6.2760 24 1 1.1798 -9.7737 -6.8585 25 6 2.8845 -5.1553 -5.6587 26 6 2.0916 -4.3878 -4.5962 27 1 -0.3633 -1.0194 -0.1301 28 1 -0.3633 0.3970 0.9479 29 1 -0.3634 0.6224 -0.8178 30 1 1.6097 -1.7337 1.2889 31 1 1.7689 -0.1772 2.1387 32 1 3.9444 -1.3480 2.0623 33 1 4.0063 0.1473 1.0989 34 1 3.5062 -2.6514 -0.0130 35 1 5.0461 -1.7634 -0.1112 36 1 3.6532 -1.5635 -2.2019 37 1 3.9875 0.0090 -1.4349 38 1 2.5671 -2.0131 -3.2864 39 1 0.1351 -1.5528 -4.6466 40 1 -0.0376 -3.0336 -3.6743 41 1 2.2070 -2.5282 -5.6781 42 1 -0.0165 -2.7450 -6.7745 43 1 -0.2892 -4.2715 -5.8994 44 1 0.5427 -4.7853 -8.1444 45 1 1.9350 -3.6969 -7.9112 46 1 4.8622 -7.8323 -6.7703 47 1 3.2704 -6.0800 -5.2295 48 1 3.7123 -4.5406 -6.0119 49 1 1.3204 -5.0355 -4.1792 50 1 2.7650 -4.0653 -3.8020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594457586.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:21:27 Heat of formation + Delta-G solvation = -25.875601 kcal Electronic energy + Delta-G solvation = -26921.933911 eV Core-core repulsion = 23369.788075 eV Total energy + Delta-G solvation = -3552.145836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.69176 -39.61882 -38.42003 -36.52135 -34.88136 -33.69813 -33.34229 -32.03578 -31.51881 -28.69669 -28.01224 -25.91301 -25.28574 -23.84852 -23.33288 -22.42050 -21.94913 -20.90526 -20.37233 -18.85611 -18.54156 -17.36572 -16.83134 -16.75072 -15.86609 -15.73130 -15.48307 -15.35071 -15.30402 -15.27132 -14.93108 -14.80389 -14.43742 -14.12451 -13.94657 -13.82298 -13.43790 -13.28997 -13.13485 -13.04113 -12.81939 -12.65610 -12.54973 -12.29770 -12.02089 -11.96218 -11.90755 -11.84303 -11.62586 -11.58416 -11.47998 -11.18552 -11.10651 -10.52994 -10.32462 -10.06147 -9.40312 -8.65831 -7.87636 -5.31519 1.45501 1.47587 1.57505 1.67466 2.18504 2.51617 2.93911 3.26796 3.71684 3.81502 3.83685 3.88784 3.95711 3.98060 4.06543 4.10316 4.31525 4.37884 4.52657 4.53911 4.55311 4.65801 4.70552 4.74923 4.76198 4.78599 4.85471 4.93321 4.96713 5.03789 5.05776 5.11188 5.18405 5.19641 5.25553 5.26315 5.29626 5.37098 5.41997 5.47583 5.51132 5.61394 5.68020 5.75264 5.78605 5.97836 6.40433 6.99598 7.16500 7.61852 7.88498 8.39644 9.18659 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.020043 B = 0.003046 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.684844 B = 9191.488418 C = 9993.419837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.156 3.844 3 H 0.083 0.917 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.134 4.134 7 C 0.105 3.895 8 N -0.627 5.627 9 C 0.698 3.302 10 O -0.620 6.620 11 N -0.738 5.738 12 C 0.157 3.843 13 C -0.078 4.078 14 C -0.115 4.115 15 C 0.141 3.859 16 N -0.612 5.612 17 C -0.264 4.264 18 H 0.063 0.937 19 C -0.049 4.049 20 N -0.932 5.932 21 Si 0.963 3.037 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.272 1.272 25 C 0.179 3.821 26 C -0.118 4.118 27 H 0.039 0.961 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.403 0.597 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.017 0.983 46 H 0.250 0.750 47 H 0.048 0.952 48 H 0.001 0.999 49 H 0.043 0.957 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.225 16.273 15.922 22.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.101 0.899 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.173 4.173 7 C -0.017 4.017 8 N -0.365 5.365 9 C 0.400 3.600 10 O -0.502 6.502 11 N -0.397 5.397 12 C 0.033 3.967 13 C -0.097 4.097 14 C -0.154 4.154 15 C 0.016 3.984 16 N -0.336 5.336 17 C -0.395 4.395 18 H 0.080 0.920 19 C -0.244 4.244 20 N -0.578 5.578 21 Si 0.791 3.209 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.197 1.197 25 C 0.053 3.947 26 C -0.157 4.157 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.241 0.759 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.035 0.965 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.019 0.981 49 H 0.062 0.938 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.946 16.376 15.978 22.899 hybrid contribution 0.504 -1.463 -0.475 1.619 sum -0.442 14.913 15.503 21.516 Atomic orbital electron populations 1.21990 0.93957 1.01960 1.00454 1.21342 0.94686 0.95379 0.83255 0.89881 1.22070 0.96770 1.00517 0.97180 1.21506 0.94724 1.01128 0.97944 1.21923 1.02156 0.98759 0.94438 1.21856 0.79267 1.01441 0.99131 1.47468 1.07136 1.61384 1.20499 1.16145 0.84729 0.78888 0.80282 1.90936 1.17244 1.63052 1.78963 1.45413 1.11340 1.56074 1.26830 1.21097 0.90933 0.96393 0.88312 1.21153 0.97865 0.95689 0.94949 1.21852 0.97442 0.99855 0.96256 1.21046 0.93754 0.89538 0.94059 1.44337 1.51002 1.03406 1.34848 1.19486 0.96713 0.87624 1.35640 0.91965 1.25747 0.94522 1.02392 1.01772 1.70187 0.98901 1.34135 1.54554 0.85334 0.77512 0.80845 0.77206 1.21259 1.21729 1.19708 1.20555 0.90246 0.96931 0.86961 1.22009 0.99283 0.96515 0.97854 0.94206 0.92058 0.92861 0.93184 0.89078 0.90700 0.90412 0.92959 0.88830 0.90270 0.89468 0.75896 0.91760 0.93293 0.90632 0.89792 0.92745 0.92950 0.96528 0.94122 0.93395 0.98130 0.93793 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 7.62 71.98 0.55 -2.35 16 2 C 0.16 2.88 3.51 45.12 0.16 3.04 16 3 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 4 C -0.13 -1.80 5.40 30.82 0.17 -1.64 16 5 C -0.12 -1.28 5.88 30.62 0.18 -1.10 16 6 C -0.13 -1.74 6.08 30.67 0.19 -1.55 16 7 C 0.11 1.58 6.43 86.36 0.56 2.13 16 8 N -0.63 -13.23 2.97 -812.08 -2.41 -15.64 16 9 C 0.70 19.43 8.10 179.05 1.45 20.88 16 10 O -0.62 -21.34 11.91 -3.98 -0.05 -21.39 16 11 N -0.74 -18.79 5.19 -478.53 -2.48 -21.28 16 12 C 0.16 4.38 5.07 86.38 0.44 4.81 16 13 C -0.08 -2.34 2.19 -10.77 -0.02 -2.36 16 14 C -0.11 -3.69 5.36 30.67 0.16 -3.53 16 15 C 0.14 5.76 6.52 86.37 0.56 6.32 16 16 N -0.61 -30.59 2.99 -699.11 -2.09 -32.68 16 17 C -0.26 -14.64 9.57 84.03 0.80 -13.84 16 18 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 19 C -0.05 -2.73 4.88 84.86 0.41 -2.31 16 20 N -0.93 -54.76 11.30 21.65 0.24 -54.51 16 21 Si 0.96 44.98 29.59 68.60 2.03 47.01 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 25 C 0.18 8.37 5.31 86.36 0.46 8.83 16 26 C -0.12 -4.18 5.25 30.67 0.16 -4.02 16 27 H 0.04 1.13 6.81 -2.39 -0.02 1.12 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.47 6.68 -2.39 -0.02 1.45 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.17 5.56 -2.39 -0.01 1.16 16 37 H 0.09 1.01 8.14 -2.39 -0.02 1.00 16 38 H 0.40 8.79 5.11 -92.71 -0.47 8.32 16 39 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 45 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 47 H 0.05 2.58 6.13 -2.39 -0.01 2.56 16 48 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 49 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.07 2.06 7.15 -2.39 -0.02 2.04 16 Total: -1.00 -68.34 372.40 1.90 -66.44 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.43 Total: 18.73 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 6.23 Total: 13.30 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -6.74 Total: -124.10 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.05 Total: -21.39 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -68.34 1.90 -66.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594457586.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.566 kcal (2) G-P(sol) polarization free energy of solvation -68.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds