Wall clock time and date at job start Fri Apr 10 2020 22:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.45800 * 2 1 4 4 C 1.54372 * 110.41386 * 122.41632 * 2 1 3 5 5 C 1.54259 * 105.06147 * 142.63003 * 4 2 1 6 6 C 1.54383 * 105.06234 * 0.02562 * 5 4 2 7 7 N 1.48562 * 104.59165 * 336.14630 * 6 5 4 8 8 C 1.46895 * 111.00012 * 159.03789 * 7 6 5 9 9 C 1.50703 * 109.46961 * 74.58369 * 8 7 6 10 10 O 1.21289 * 119.99823 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00120 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00470 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.19714 * 34.99595 * 12 11 9 14 14 C 1.50127 * 109.21163 * 154.35928 * 12 11 9 15 15 C 1.52529 * 105.41666 * 218.03265 * 14 12 11 16 16 C 1.46242 * 114.27407 * 270.59601 * 15 14 12 17 17 N 1.50167 * 107.53540 * 58.40635 * 16 15 14 18 18 C 1.36935 * 120.53849 * 109.60753 * 17 16 15 19 19 H 1.07998 * 120.00294 * 320.22214 * 18 17 16 20 20 C 1.38817 * 120.00116 * 140.21757 * 18 17 16 21 21 N 1.31620 * 120.00007 * 156.32164 * 20 18 17 22 22 Si 1.86798 * 119.99869 * 336.32602 * 20 18 17 23 23 H 1.48506 * 109.46934 * 95.56977 * 22 20 18 24 24 H 1.48501 * 109.47228 * 215.56706 * 22 20 18 25 25 H 1.48497 * 109.47287 * 335.57109 * 22 20 18 26 26 C 1.43433 * 118.92647 * 289.59009 * 17 16 15 27 27 C 1.54836 * 109.21041 * 275.64226 * 12 11 9 28 28 H 1.08994 * 109.46992 * 299.03743 * 1 2 3 29 29 H 1.09005 * 109.47334 * 59.03897 * 1 2 3 30 30 H 1.08996 * 109.47284 * 179.03553 * 1 2 3 31 31 H 1.09007 * 110.32065 * 23.73607 * 4 2 1 32 32 H 1.08997 * 110.41311 * 261.57356 * 4 2 1 33 33 H 1.09003 * 110.32466 * 118.90129 * 5 4 2 34 34 H 1.09008 * 110.32259 * 241.10390 * 5 4 2 35 35 H 1.08990 * 110.41108 * 94.92450 * 6 5 4 36 36 H 1.08999 * 110.40962 * 217.37371 * 6 5 4 37 37 H 1.08995 * 109.47420 * 194.57838 * 8 7 6 38 38 H 1.08999 * 109.47563 * 314.58296 * 8 7 6 39 39 H 0.96998 * 119.99961 * 359.97438 * 11 9 8 40 40 H 1.08999 * 110.24612 * 337.00201 * 14 12 11 41 41 H 1.08988 * 110.24848 * 98.91274 * 14 12 11 42 42 H 1.08997 * 108.52294 * 31.83077 * 15 14 12 43 43 H 1.08996 * 108.52453 * 149.50908 * 15 14 12 44 44 H 1.09000 * 109.84532 * 177.91259 * 16 15 14 45 45 H 1.08997 * 109.84678 * 298.83304 * 16 15 14 46 46 H 0.97001 * 119.99764 * 180.02562 * 21 20 18 47 47 H 1.08999 * 108.15952 * 213.28440 * 26 17 16 48 48 H 1.09000 * 108.15712 * 330.06008 * 26 17 16 49 49 H 1.09003 * 109.36072 * 320.99166 * 27 12 11 50 50 H 1.08999 * 109.35972 * 80.57975 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0685 -0.7756 1.2213 5 6 3.3178 -1.5188 0.7052 6 6 3.4295 -1.1293 -0.7845 7 7 2.0486 -0.7454 -1.1755 8 6 2.0577 0.1027 -2.3749 9 6 2.3511 -0.7439 -3.5866 10 8 2.5351 -1.9364 -3.4630 11 7 2.4102 -0.1759 -4.8073 12 6 2.6960 -0.9988 -5.9852 13 1 2.2404 -1.9806 -5.8557 14 6 2.1126 -0.3399 -7.2015 15 6 1.5761 -1.4794 -8.0619 16 6 2.5481 -2.0286 -9.0064 17 7 3.7253 -2.5164 -8.2119 18 6 3.9726 -3.8574 -8.0866 19 1 3.1532 -4.5469 -7.9473 20 6 5.2766 -4.3306 -8.1386 21 7 5.5822 -5.4808 -7.5766 22 14 6.5976 -3.3347 -9.0061 23 1 7.3264 -2.5068 -8.0117 24 1 7.5503 -4.2548 -9.6776 25 1 5.9662 -2.4507 -10.0186 26 6 4.5867 -1.5549 -7.5867 27 6 4.2286 -1.1637 -6.1317 28 1 -0.3633 0.4988 0.8984 29 1 -0.3634 0.5287 -0.8813 30 1 -0.3633 -1.0275 -0.0173 31 1 1.3235 -1.4881 1.5758 32 1 2.3414 -0.0855 2.0197 33 1 4.2042 -1.1923 1.2491 34 1 3.1861 -2.5962 0.8064 35 1 4.1078 -0.2850 -0.9068 36 1 3.7693 -1.9799 -1.3753 37 1 1.0837 0.5780 -2.4911 38 1 2.8260 0.8690 -2.2723 39 1 2.2634 0.7778 -4.9060 40 1 1.3021 0.3304 -6.9152 41 1 2.8844 0.2105 -7.7392 42 1 1.2409 -2.2815 -7.4044 43 1 0.7177 -1.1134 -8.6252 44 1 2.1027 -2.8584 -9.5553 45 1 2.8663 -1.2529 -9.7029 46 1 6.4935 -5.8113 -7.6127 47 1 5.6011 -1.9537 -7.5917 48 1 4.5778 -0.6476 -8.1906 49 1 4.7190 -0.2237 -5.8787 50 1 4.5746 -1.9435 -5.4532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052712708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:20:32 Heat of formation + Delta-G solvation = -2.081031 kcal Electronic energy + Delta-G solvation = -27069.849407 eV Core-core repulsion = 23518.735381 eV Total energy + Delta-G solvation = -3551.114026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.02018 -38.91105 -37.64529 -34.65131 -32.87797 -32.48264 -31.51956 -31.23482 -30.58806 -27.01595 -26.06891 -25.49703 -24.04934 -23.08704 -21.31392 -20.48962 -20.34841 -19.84112 -19.40756 -16.87809 -16.58981 -16.34219 -15.81972 -15.45795 -15.22418 -14.92012 -14.47744 -14.37967 -14.04929 -13.71807 -13.48928 -13.19996 -13.00994 -12.79752 -12.56526 -12.46004 -12.13653 -11.94578 -11.86466 -11.77530 -11.76041 -11.39668 -11.23517 -10.95891 -10.85128 -10.79968 -10.64037 -10.48624 -10.37782 -10.19485 -9.98599 -9.62887 -9.52823 -9.40877 -8.62351 -8.54469 -8.36146 -6.69240 -5.93196 -3.36111 2.96705 3.25873 3.36603 3.50149 3.56281 3.96135 4.40075 4.57375 4.58752 4.79411 4.92535 4.95258 5.02643 5.10745 5.14080 5.21943 5.22965 5.32395 5.36281 5.45145 5.46983 5.54116 5.56931 5.63285 5.73943 5.87284 5.88807 5.94125 6.00914 6.03740 6.04752 6.14116 6.19348 6.26383 6.35535 6.43656 6.63349 6.68364 6.75454 6.78112 6.80996 6.84256 6.96950 7.01293 7.06766 7.84342 8.15677 8.44635 8.61495 9.08034 9.78165 10.22275 11.22205 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.003506 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.457205 B = 7984.909085 C = 8863.287248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.056 3.944 3 H 0.050 0.950 4 C -0.119 4.119 5 C -0.124 4.124 6 C 0.033 3.967 7 N -0.486 5.486 8 C 0.025 3.975 9 C 0.506 3.494 10 O -0.509 6.509 11 N -0.734 5.734 12 C 0.157 3.843 13 H 0.094 0.906 14 C -0.119 4.119 15 C -0.130 4.130 16 C 0.135 3.865 17 N -0.600 5.600 18 C -0.267 4.267 19 H 0.075 0.925 20 C 0.040 3.960 21 N -0.895 5.895 22 Si 0.876 3.124 23 H -0.287 1.287 24 H -0.302 1.302 25 H -0.270 1.270 26 C 0.154 3.846 27 C -0.147 4.147 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.390 0.610 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.067 0.933 45 H 0.030 0.970 46 H 0.262 0.738 47 H 0.043 0.957 48 H 0.028 0.972 49 H 0.048 0.952 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 17.188 12.796 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.053 4.053 3 H 0.068 0.932 4 C -0.157 4.157 5 C -0.163 4.163 6 C -0.094 4.094 7 N -0.210 5.210 8 C -0.107 4.107 9 C 0.290 3.710 10 O -0.383 6.383 11 N -0.386 5.386 12 C 0.054 3.946 13 H 0.112 0.888 14 C -0.157 4.157 15 C -0.170 4.170 16 C 0.012 3.988 17 N -0.323 5.323 18 C -0.396 4.396 19 H 0.092 0.908 20 C -0.161 4.161 21 N -0.535 5.535 22 Si 0.706 3.294 23 H -0.215 1.215 24 H -0.230 1.230 25 H -0.195 1.195 26 C 0.025 3.975 27 C -0.189 4.189 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.223 0.777 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.049 0.951 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.046 0.954 49 H 0.066 0.934 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.576 15.651 12.756 21.937 hybrid contribution 1.378 1.792 -0.289 2.279 sum -7.197 17.443 12.466 22.616 Atomic orbital electron populations 1.21727 0.93750 1.02820 1.01160 1.22685 0.96216 0.95681 0.90677 0.93249 1.22335 0.97810 0.99044 0.96491 1.22290 0.97544 1.01344 0.95075 1.23198 0.88978 1.01118 0.96141 1.65116 1.19176 1.35604 1.01150 1.22168 1.02746 0.94724 0.91015 1.20379 0.77534 0.88894 0.84149 1.90768 1.47028 1.15062 1.85418 1.46437 1.73289 1.11561 1.07358 1.21142 0.96299 0.94980 0.82191 0.88754 1.21294 0.99924 0.97973 0.96472 1.20866 0.98984 0.97611 0.99509 1.20453 0.88658 0.97345 0.92384 1.44186 1.30381 1.02910 1.54807 1.18704 0.93201 0.81828 1.45866 0.90758 1.25528 0.97632 0.95261 0.97637 1.69913 1.19354 1.21687 1.42573 0.86914 0.81939 0.79621 0.80933 1.21490 1.22961 1.19468 1.20606 0.94480 0.91824 0.90547 1.23194 0.94428 0.99985 1.01304 0.92330 0.92864 0.91494 0.90801 0.91522 0.91502 0.90750 0.94315 0.88607 0.88315 0.92139 0.77704 0.92100 0.91069 0.91617 0.93451 0.91405 0.95147 0.92774 0.93958 0.95376 0.93370 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.31 37.16 0.35 -0.81 16 2 C 0.06 0.53 2.87 -66.08 -0.19 0.34 16 3 H 0.05 0.42 7.99 -51.93 -0.42 0.01 16 4 C -0.12 -1.04 6.55 -25.35 -0.17 -1.21 16 5 C -0.12 -1.26 7.00 -25.35 -0.18 -1.44 16 6 C 0.03 0.42 5.92 -2.18 -0.01 0.41 16 7 N -0.49 -6.09 4.66 -223.59 -1.04 -7.14 16 8 C 0.03 0.29 5.27 -4.98 -0.03 0.26 16 9 C 0.51 7.90 7.64 -10.99 -0.08 7.81 16 10 O -0.51 -10.68 14.88 5.55 0.08 -10.60 16 11 N -0.73 -10.16 4.96 -54.25 -0.27 -10.43 16 12 C 0.16 2.71 2.23 -68.39 -0.15 2.56 16 13 H 0.09 2.04 6.25 -51.93 -0.32 1.72 16 14 C -0.12 -1.73 5.33 -28.40 -0.15 -1.88 16 15 C -0.13 -2.13 5.20 -30.18 -0.16 -2.29 16 16 C 0.14 2.61 6.11 -5.20 -0.03 2.57 16 17 N -0.60 -14.25 2.14 -175.11 -0.37 -14.62 16 18 C -0.27 -7.62 9.92 -15.06 -0.15 -7.77 16 19 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 20 C 0.04 1.19 5.28 -17.43 -0.09 1.10 16 21 N -0.89 -28.07 13.97 55.49 0.78 -27.29 16 22 Si 0.88 22.66 25.26 -169.99 -4.29 18.37 16 23 H -0.29 -7.29 6.73 56.52 0.38 -6.91 16 24 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 26 C 0.15 3.38 4.22 -4.68 -0.02 3.36 16 27 C -0.15 -2.91 5.98 -24.78 -0.15 -3.06 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.43 7.36 -51.93 -0.38 0.05 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 35 H 0.04 0.45 7.75 -51.93 -0.40 0.05 16 36 H 0.10 1.52 7.24 -51.93 -0.38 1.14 16 37 H 0.10 0.91 7.21 -51.93 -0.37 0.54 16 38 H 0.06 0.58 7.77 -51.93 -0.40 0.18 16 39 H 0.39 3.91 8.49 -40.82 -0.35 3.56 16 40 H 0.06 0.72 7.86 -51.93 -0.41 0.32 16 41 H 0.07 1.03 6.29 -51.94 -0.33 0.70 16 42 H 0.07 1.22 6.93 -51.93 -0.36 0.86 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.32 7.99 -51.93 -0.42 0.91 16 45 H 0.03 0.54 8.13 -51.93 -0.42 0.12 16 46 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 47 H 0.04 1.05 3.40 -51.93 -0.18 0.87 16 48 H 0.03 0.55 6.88 -51.93 -0.36 0.19 16 49 H 0.05 0.83 8.13 -51.93 -0.42 0.40 16 50 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -34.09 372.52 -9.58 -43.67 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.86 Total: 2.48 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.21 Total: -0.04 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.91 Total: -59.48 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.29 Total: 18.37 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.09 -9.58 -43.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052712708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.586 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds