Wall clock time and date at job start Fri Apr 10 2020 22:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.45800 * 2 1 4 4 C 1.54372 * 110.41386 * 122.41632 * 2 1 3 5 5 C 1.54259 * 105.06147 * 142.63003 * 4 2 1 6 6 C 1.54383 * 105.06234 * 0.02562 * 5 4 2 7 7 N 1.48562 * 104.59165 * 336.14630 * 6 5 4 8 8 C 1.46895 * 111.00012 * 159.03789 * 7 6 5 9 9 C 1.50703 * 109.46961 * 74.58369 * 8 7 6 10 10 O 1.21289 * 119.99823 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00120 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00470 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.19714 * 34.99595 * 12 11 9 14 14 C 1.50127 * 109.21163 * 154.35928 * 12 11 9 15 15 C 1.52529 * 105.41666 * 218.03265 * 14 12 11 16 16 C 1.46242 * 114.27407 * 270.59601 * 15 14 12 17 17 N 1.50167 * 107.53540 * 58.40635 * 16 15 14 18 18 C 1.36935 * 120.53849 * 109.60753 * 17 16 15 19 19 H 1.07998 * 120.00294 * 320.22214 * 18 17 16 20 20 C 1.38817 * 120.00116 * 140.21757 * 18 17 16 21 21 N 1.31620 * 120.00007 * 156.32164 * 20 18 17 22 22 Si 1.86798 * 119.99869 * 336.32602 * 20 18 17 23 23 H 1.48506 * 109.46934 * 95.56977 * 22 20 18 24 24 H 1.48501 * 109.47228 * 215.56706 * 22 20 18 25 25 H 1.48497 * 109.47287 * 335.57109 * 22 20 18 26 26 C 1.43433 * 118.92647 * 289.59009 * 17 16 15 27 27 C 1.54836 * 109.21041 * 275.64226 * 12 11 9 28 28 H 1.08994 * 109.46992 * 299.03743 * 1 2 3 29 29 H 1.09005 * 109.47334 * 59.03897 * 1 2 3 30 30 H 1.08996 * 109.47284 * 179.03553 * 1 2 3 31 31 H 1.09007 * 110.32065 * 23.73607 * 4 2 1 32 32 H 1.08997 * 110.41311 * 261.57356 * 4 2 1 33 33 H 1.09003 * 110.32466 * 118.90129 * 5 4 2 34 34 H 1.09008 * 110.32259 * 241.10390 * 5 4 2 35 35 H 1.08990 * 110.41108 * 94.92450 * 6 5 4 36 36 H 1.08999 * 110.40962 * 217.37371 * 6 5 4 37 37 H 1.08995 * 109.47420 * 194.57838 * 8 7 6 38 38 H 1.08999 * 109.47563 * 314.58296 * 8 7 6 39 39 H 0.96998 * 119.99961 * 359.97438 * 11 9 8 40 40 H 1.08999 * 110.24612 * 337.00201 * 14 12 11 41 41 H 1.08988 * 110.24848 * 98.91274 * 14 12 11 42 42 H 1.08997 * 108.52294 * 31.83077 * 15 14 12 43 43 H 1.08996 * 108.52453 * 149.50908 * 15 14 12 44 44 H 1.09000 * 109.84532 * 177.91259 * 16 15 14 45 45 H 1.08997 * 109.84678 * 298.83304 * 16 15 14 46 46 H 0.97001 * 119.99764 * 180.02562 * 21 20 18 47 47 H 1.08999 * 108.15952 * 213.28440 * 26 17 16 48 48 H 1.09000 * 108.15712 * 330.06008 * 26 17 16 49 49 H 1.09003 * 109.36072 * 320.99166 * 27 12 11 50 50 H 1.08999 * 109.35972 * 80.57975 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0685 -0.7756 1.2213 5 6 3.3178 -1.5188 0.7052 6 6 3.4295 -1.1293 -0.7845 7 7 2.0486 -0.7454 -1.1755 8 6 2.0577 0.1027 -2.3749 9 6 2.3511 -0.7439 -3.5866 10 8 2.5351 -1.9364 -3.4630 11 7 2.4102 -0.1759 -4.8073 12 6 2.6960 -0.9988 -5.9852 13 1 2.2404 -1.9806 -5.8557 14 6 2.1126 -0.3399 -7.2015 15 6 1.5761 -1.4794 -8.0619 16 6 2.5481 -2.0286 -9.0064 17 7 3.7253 -2.5164 -8.2119 18 6 3.9726 -3.8574 -8.0866 19 1 3.1532 -4.5469 -7.9473 20 6 5.2766 -4.3306 -8.1386 21 7 5.5822 -5.4808 -7.5766 22 14 6.5976 -3.3347 -9.0061 23 1 7.3264 -2.5068 -8.0117 24 1 7.5503 -4.2548 -9.6776 25 1 5.9662 -2.4507 -10.0186 26 6 4.5867 -1.5549 -7.5867 27 6 4.2286 -1.1637 -6.1317 28 1 -0.3633 0.4988 0.8984 29 1 -0.3634 0.5287 -0.8813 30 1 -0.3633 -1.0275 -0.0173 31 1 1.3235 -1.4881 1.5758 32 1 2.3414 -0.0855 2.0197 33 1 4.2042 -1.1923 1.2491 34 1 3.1861 -2.5962 0.8064 35 1 4.1078 -0.2850 -0.9068 36 1 3.7693 -1.9799 -1.3753 37 1 1.0837 0.5780 -2.4911 38 1 2.8260 0.8690 -2.2723 39 1 2.2634 0.7778 -4.9060 40 1 1.3021 0.3304 -6.9152 41 1 2.8844 0.2105 -7.7392 42 1 1.2409 -2.2815 -7.4044 43 1 0.7177 -1.1134 -8.6252 44 1 2.1027 -2.8584 -9.5553 45 1 2.8663 -1.2529 -9.7029 46 1 6.4935 -5.8113 -7.6127 47 1 5.6011 -1.9537 -7.5917 48 1 4.5778 -0.6476 -8.1906 49 1 4.7190 -0.2237 -5.8787 50 1 4.5746 -1.9435 -5.4532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052712708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:20:32 Heat of formation + Delta-G solvation = -27.683087 kcal Electronic energy + Delta-G solvation = -27070.959596 eV Core-core repulsion = 23518.735381 eV Total energy + Delta-G solvation = -3552.224214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.20757 -40.04644 -39.02939 -36.26135 -34.57272 -33.47799 -33.12361 -32.27562 -32.09814 -28.42098 -27.41052 -26.32752 -25.66921 -24.81328 -22.34123 -21.86564 -21.24306 -21.03391 -20.98731 -18.51821 -18.00569 -17.71280 -17.24918 -16.58668 -16.49643 -16.08343 -16.05221 -15.74201 -15.30163 -14.92888 -14.89240 -14.66316 -14.34014 -14.18788 -13.85789 -13.76001 -13.58999 -13.36389 -13.19642 -12.86961 -12.69618 -12.61190 -12.39818 -12.26960 -12.20131 -12.10229 -12.03661 -11.77354 -11.65305 -11.61160 -11.48244 -11.40553 -11.27590 -10.73145 -10.57685 -9.95009 -9.42789 -8.67498 -8.21668 -5.61447 1.29435 1.37922 1.51296 1.75169 2.16728 2.41839 3.00401 3.05578 3.35473 3.61813 3.73132 3.86350 3.92923 4.02876 4.09003 4.19275 4.21668 4.29676 4.32795 4.37348 4.41873 4.49823 4.54357 4.58122 4.69466 4.72162 4.81720 4.87651 4.90466 4.90842 4.98075 5.04140 5.06468 5.09122 5.17324 5.20026 5.27521 5.28681 5.38961 5.39815 5.40574 5.60182 5.69256 5.88088 5.94907 6.03149 6.16567 6.73920 7.02261 7.46614 7.64425 8.08490 8.98694 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.003506 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.457205 B = 7984.909085 C = 8863.287248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.057 3.943 3 H 0.071 0.929 4 C -0.115 4.115 5 C -0.123 4.123 6 C 0.033 3.967 7 N -0.517 5.517 8 C 0.035 3.965 9 C 0.499 3.501 10 O -0.576 6.576 11 N -0.716 5.716 12 C 0.168 3.832 13 H 0.038 0.962 14 C -0.106 4.106 15 C -0.128 4.128 16 C 0.133 3.867 17 N -0.613 5.613 18 C -0.258 4.258 19 H 0.025 0.975 20 C -0.023 4.023 21 N -0.952 5.952 22 Si 0.952 3.048 23 H -0.280 1.280 24 H -0.307 1.307 25 H -0.248 1.248 26 C 0.146 3.854 27 C -0.140 4.140 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.129 0.871 38 H 0.089 0.911 39 H 0.416 0.584 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.028 0.972 43 H 0.087 0.913 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.262 0.738 47 H 0.014 0.986 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.330 22.875 12.637 27.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.051 4.051 3 H 0.089 0.911 4 C -0.153 4.153 5 C -0.161 4.161 6 C -0.095 4.095 7 N -0.242 5.242 8 C -0.096 4.096 9 C 0.285 3.715 10 O -0.454 6.454 11 N -0.369 5.369 12 C 0.063 3.937 13 H 0.056 0.944 14 C -0.144 4.144 15 C -0.167 4.167 16 C 0.011 3.989 17 N -0.337 5.337 18 C -0.389 4.389 19 H 0.043 0.957 20 C -0.219 4.219 21 N -0.595 5.595 22 Si 0.780 3.220 23 H -0.207 1.207 24 H -0.235 1.235 25 H -0.172 1.172 26 C 0.019 3.981 27 C -0.182 4.182 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.147 0.853 38 H 0.107 0.893 39 H 0.254 0.746 40 H 0.120 0.880 41 H 0.107 0.893 42 H 0.047 0.953 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.032 0.968 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -9.459 21.440 12.582 26.598 hybrid contribution 1.521 -0.026 -0.177 1.532 sum -7.938 21.414 12.405 25.990 Atomic orbital electron populations 1.21727 0.92994 1.01908 1.02568 1.22795 0.96731 0.96274 0.89254 0.91145 1.22364 0.96701 0.99259 0.96993 1.22283 0.99393 1.00678 0.93785 1.23070 0.89697 0.99798 0.96919 1.65029 1.18984 1.37469 1.02734 1.22170 1.05141 0.93916 0.88385 1.21329 0.75944 0.88518 0.85677 1.90762 1.49929 1.18315 1.86395 1.46186 1.72220 1.12549 1.05986 1.20756 0.94124 0.93750 0.85046 0.94366 1.21280 1.01468 0.97461 0.94148 1.20761 0.99578 0.97394 0.98940 1.20669 0.87360 0.97809 0.93083 1.44333 1.31948 1.01292 1.56109 1.18550 0.91970 0.83937 1.44406 0.95719 1.26237 1.00393 0.96742 0.98550 1.70072 1.19954 1.24524 1.44984 0.85694 0.78584 0.78008 0.79735 1.20727 1.23535 1.17158 1.20729 0.92608 0.92614 0.92163 1.23091 0.96709 0.99592 0.98808 0.90107 0.92283 0.93545 0.91159 0.88976 0.89687 0.92448 0.93134 0.93428 0.85310 0.89315 0.74620 0.88026 0.89258 0.95296 0.89429 0.92761 0.91706 0.92942 0.96813 0.91098 0.89895 0.97318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.31 71.98 0.67 -1.25 16 2 C 0.06 0.93 2.87 45.06 0.13 1.06 16 3 H 0.07 0.89 7.99 -2.39 -0.02 0.87 16 4 C -0.12 -1.80 6.55 31.49 0.21 -1.59 16 5 C -0.12 -2.48 7.00 31.49 0.22 -2.26 16 6 C 0.03 0.86 5.92 86.45 0.51 1.37 16 7 N -0.52 -12.59 4.66 -861.32 -4.01 -16.60 16 8 C 0.04 0.72 5.27 85.56 0.45 1.17 16 9 C 0.50 15.51 7.64 87.66 0.67 16.18 16 10 O -0.58 -25.98 14.88 -3.06 -0.05 -26.02 16 11 N -0.72 -18.40 4.96 -443.94 -2.20 -20.61 16 12 C 0.17 5.69 2.23 44.69 0.10 5.79 16 13 H 0.04 1.76 6.25 -2.38 -0.01 1.74 16 14 C -0.11 -2.66 5.33 29.51 0.16 -2.50 16 15 C -0.13 -3.90 5.20 28.36 0.15 -3.75 16 16 C 0.13 4.89 6.11 83.58 0.51 5.41 16 17 N -0.61 -29.27 2.14 -707.92 -1.51 -30.79 16 18 C -0.26 -15.57 9.92 84.04 0.83 -14.74 16 19 H 0.03 1.70 8.06 -2.91 -0.02 1.67 16 20 C -0.02 -1.42 5.28 84.86 0.45 -0.97 16 21 N -0.95 -63.51 13.97 21.65 0.30 -63.20 16 22 Si 0.95 48.12 25.26 68.60 1.73 49.85 16 23 H -0.28 -13.69 6.73 99.48 0.67 -13.02 16 24 H -0.31 -15.60 7.11 99.48 0.71 -14.90 16 25 H -0.25 -11.53 7.11 99.48 0.71 -10.83 16 26 C 0.15 6.24 4.22 87.58 0.37 6.61 16 27 C -0.14 -5.53 5.98 31.86 0.19 -5.34 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.77 7.36 -2.38 -0.02 0.75 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.14 7.86 -2.38 -0.02 1.12 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.05 1.14 7.75 -2.39 -0.02 1.12 16 36 H 0.05 1.67 7.24 -2.39 -0.02 1.65 16 37 H 0.13 1.87 7.21 -2.39 -0.02 1.85 16 38 H 0.09 1.36 7.77 -2.39 -0.02 1.34 16 39 H 0.42 6.44 8.49 -92.71 -0.79 5.65 16 40 H 0.10 1.80 7.86 -2.39 -0.02 1.78 16 41 H 0.09 2.02 6.29 -2.39 -0.02 2.00 16 42 H 0.03 1.09 6.93 -2.39 -0.02 1.08 16 43 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.05 2.11 7.99 -2.39 -0.02 2.09 16 45 H 0.06 2.00 8.13 -2.39 -0.02 1.98 16 46 H 0.26 16.47 8.31 -92.71 -0.77 15.70 16 47 H 0.01 0.67 3.40 -2.39 -0.01 0.66 16 48 H 0.07 2.44 6.88 -2.39 -0.02 2.43 16 49 H 0.08 2.64 8.13 -2.39 -0.02 2.63 16 50 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -85.15 372.52 -0.03 -85.18 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.09 Total: 16.99 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 5.62 Total: 5.19 kcal Atomic # 7 Polarization: -123.77 SS G_CDS: -7.43 Total: -131.20 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.02 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 1.73 Total: 49.85 kcal Total: -85.15 -0.03 -85.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052712708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.501 kcal (2) G-P(sol) polarization free energy of solvation -85.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds