Wall clock time and date at job start Fri Apr 10 2020 22:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.87826 * 2 1 4 4 C 1.54328 * 110.00921 * 238.90429 * 2 1 3 5 5 H 1.09009 * 110.72116 * 336.68251 * 4 2 1 6 6 N 1.46500 * 110.72053 * 99.95136 * 4 2 1 7 7 C 1.34774 * 120.00296 * 204.99530 * 6 4 2 8 8 O 1.21279 * 120.00014 * 0.02562 * 7 6 4 9 9 C 1.50705 * 120.00038 * 180.02562 * 7 6 4 10 10 C 1.52996 * 109.46909 * 180.02562 * 9 7 6 11 11 N 1.46906 * 109.46881 * 180.02562 * 10 9 7 12 12 C 1.46845 * 110.99890 * 294.20547 * 11 10 9 13 13 C 1.53035 * 109.52041 * 174.15849 * 12 11 10 14 14 C 1.53118 * 109.27849 * 59.18528 * 13 12 11 15 15 C 1.53121 * 109.15978 * 302.34496 * 14 13 12 16 16 C 1.46846 * 110.99772 * 169.99729 * 11 10 9 17 17 C 1.55152 * 102.94497 * 218.31948 * 4 2 1 18 18 C 1.54692 * 101.67423 * 35.33491 * 17 4 2 19 19 N 1.47018 * 109.88226 * 121.02444 * 2 1 3 20 20 C 1.36942 * 125.64755 * 298.46629 * 19 2 1 21 21 H 1.08006 * 119.99565 * 349.28136 * 20 19 2 22 22 C 1.38808 * 120.00307 * 169.27290 * 20 19 2 23 23 N 1.31624 * 119.99681 * 350.84003 * 22 20 19 24 24 Si 1.86802 * 120.00157 * 170.83415 * 22 20 19 25 25 H 1.48490 * 109.46927 * 85.24224 * 24 22 20 26 26 H 1.48501 * 109.46800 * 205.24364 * 24 22 20 27 27 H 1.48501 * 109.46726 * 325.24070 * 24 22 20 28 28 H 1.09005 * 109.46747 * 300.43562 * 1 2 3 29 29 H 1.09003 * 109.47322 * 60.43159 * 1 2 3 30 30 H 1.08995 * 109.47179 * 180.43136 * 1 2 3 31 31 H 0.97004 * 119.99591 * 25.00883 * 6 4 2 32 32 H 1.09003 * 109.47110 * 300.00569 * 9 7 6 33 33 H 1.09001 * 109.46709 * 60.00879 * 9 7 6 34 34 H 1.09003 * 109.47148 * 299.99871 * 10 9 7 35 35 H 1.08998 * 109.47584 * 60.00140 * 10 9 7 36 36 H 1.08997 * 109.46188 * 294.18174 * 12 11 10 37 37 H 1.08998 * 109.45865 * 54.15076 * 12 11 10 38 38 H 1.08991 * 109.50885 * 299.24163 * 13 12 11 39 39 H 1.09005 * 109.53402 * 179.14120 * 13 12 11 40 40 H 1.08998 * 109.52723 * 182.44161 * 14 13 12 41 41 H 1.09002 * 109.57673 * 62.27373 * 14 13 12 42 42 H 1.09004 * 109.50202 * 297.70922 * 15 14 13 43 43 H 1.08997 * 109.53783 * 177.61352 * 15 14 13 44 44 H 1.08999 * 109.46459 * 305.85546 * 16 11 10 45 45 H 1.09005 * 109.46167 * 65.82528 * 16 11 10 46 46 H 1.08996 * 111.00696 * 153.57258 * 17 4 2 47 47 H 1.08999 * 111.00389 * 277.39503 * 17 4 2 48 48 H 1.09011 * 110.39129 * 204.36485 * 18 17 4 49 49 H 1.08998 * 110.23522 * 82.11849 * 18 17 4 50 50 H 0.97001 * 119.99424 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0581 -0.7489 -1.2417 5 1 1.3102 -1.4472 -1.6180 6 7 2.4579 0.1970 -2.2865 7 6 2.4632 -0.1879 -3.5780 8 8 2.1365 -1.3173 -3.8755 9 6 2.8751 0.7851 -4.6526 10 6 2.7928 0.1011 -6.0187 11 7 3.1949 1.0494 -7.0662 12 6 2.2382 2.1589 -7.1669 13 6 2.7623 3.1973 -8.1615 14 6 2.9518 2.5364 -9.5296 15 6 3.9147 1.3543 -9.3876 16 6 3.3573 0.3694 -8.3575 17 6 3.2917 -1.5108 -0.6896 18 6 2.8221 -1.8732 0.7391 19 7 2.0300 -0.7126 1.1848 20 6 1.8026 -0.3540 2.4867 21 1 1.3627 0.6060 2.7135 22 6 2.1373 -1.2244 3.5149 23 7 2.5029 -2.4585 3.2396 24 14 2.0691 -0.6442 5.2892 25 1 0.6861 -0.7981 5.8075 26 1 2.9996 -1.4579 6.1122 27 1 2.4675 0.7847 5.3584 28 1 -0.3633 0.5206 0.8861 29 1 -0.3634 0.5071 -0.8938 30 1 -0.3633 -1.0276 0.0077 31 1 2.7191 1.1005 -2.0485 32 1 2.2080 1.6471 -4.6374 33 1 3.8984 1.1143 -4.4719 34 1 3.4596 -0.7610 -6.0342 35 1 1.7694 -0.2278 -6.1993 36 1 1.2764 1.7790 -7.5114 37 1 2.1159 2.6229 -6.1883 38 1 3.7175 3.5877 -7.8106 39 1 2.0452 4.0136 -8.2479 40 1 3.3660 3.2614 -10.2302 41 1 1.9903 2.1804 -9.8995 42 1 4.8881 1.7157 -9.0560 43 1 4.0211 0.8532 -10.3497 44 1 4.0476 -0.4664 -8.2435 45 1 2.3902 -0.0021 -8.6965 46 1 3.4919 -2.4074 -1.2761 47 1 4.1682 -0.8637 -0.6573 48 1 3.6802 -2.0213 1.3949 49 1 2.2021 -2.7694 0.7161 50 1 2.7372 -3.0666 3.9582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692236708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:23:49 Heat of formation + Delta-G solvation = -45.043316 kcal Electronic energy + Delta-G solvation = -25997.361888 eV Core-core repulsion = 22444.384878 eV Total energy + Delta-G solvation = -3552.977010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.08779 -39.90568 -39.09271 -35.58462 -35.11930 -33.83671 -32.11147 -31.87732 -31.32104 -30.20197 -26.82264 -25.91082 -25.40263 -23.96154 -23.01022 -22.04375 -21.54363 -20.89296 -20.58139 -18.70213 -18.23653 -17.33731 -16.72404 -16.64675 -16.57033 -15.86287 -15.76405 -15.43100 -15.26234 -15.20902 -14.68129 -14.41282 -14.33945 -14.07153 -13.96885 -13.74670 -13.54094 -13.20336 -13.05546 -12.89191 -12.79549 -12.72210 -12.56425 -12.27878 -12.09661 -12.09094 -12.07810 -11.94677 -11.62579 -11.55197 -11.51707 -11.24950 -11.14606 -10.85932 -10.66399 -9.97878 -9.30975 -8.86379 -7.85497 -5.21083 1.47825 1.49375 1.57966 1.68594 2.11724 2.52261 2.98266 3.34743 3.57922 3.81353 3.85928 3.89477 3.93251 3.98902 4.03697 4.14058 4.21350 4.25633 4.37296 4.50332 4.51308 4.55069 4.62932 4.65665 4.70644 4.71133 4.81219 4.82483 4.91921 4.96206 4.99308 5.01714 5.05558 5.10674 5.13147 5.15811 5.27538 5.32720 5.38270 5.48195 5.51856 5.56970 5.65648 5.70520 6.08302 6.16797 6.21571 6.62806 7.08522 7.31890 7.77293 8.43767 9.26629 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.037803 B = 0.002262 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.501325 B =12376.494006 C =12675.175212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.150 3.850 3 H 0.057 0.943 4 C 0.153 3.847 5 H 0.076 0.924 6 N -0.704 5.704 7 C 0.513 3.487 8 O -0.589 6.589 9 C -0.122 4.122 10 C 0.077 3.923 11 N -0.540 5.540 12 C 0.045 3.955 13 C -0.114 4.114 14 C -0.123 4.123 15 C -0.113 4.113 16 C 0.052 3.948 17 C -0.139 4.139 18 C 0.181 3.819 19 N -0.613 5.613 20 C -0.231 4.231 21 H 0.084 0.916 22 C -0.067 4.067 23 N -0.951 5.951 24 Si 0.976 3.024 25 H -0.286 1.286 26 H -0.297 1.297 27 H -0.267 1.267 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.030 0.970 31 H 0.416 0.584 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.068 0.932 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.026 0.974 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.037 0.963 49 H -0.007 1.007 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 13.209 -24.702 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.043 3.957 3 H 0.074 0.926 4 C 0.046 3.954 5 H 0.094 0.906 6 N -0.356 5.356 7 C 0.301 3.699 8 O -0.469 6.469 9 C -0.162 4.162 10 C -0.052 4.052 11 N -0.265 5.265 12 C -0.082 4.082 13 C -0.152 4.152 14 C -0.160 4.160 15 C -0.151 4.151 16 C -0.076 4.076 17 C -0.179 4.179 18 C 0.056 3.944 19 N -0.338 5.338 20 C -0.360 4.360 21 H 0.102 0.898 22 C -0.261 4.261 23 N -0.599 5.599 24 Si 0.805 3.195 25 H -0.213 1.213 26 H -0.224 1.224 27 H -0.192 1.192 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.049 0.951 31 H 0.253 0.747 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.045 0.955 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.056 0.944 49 H 0.011 0.989 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.171 12.549 -24.592 27.694 hybrid contribution -0.865 -0.607 1.301 1.676 sum 1.306 11.942 -23.291 26.206 Atomic orbital electron populations 1.22112 0.96881 1.00402 1.01091 1.21239 0.93263 0.95325 0.85829 0.92559 1.21641 0.95965 0.90997 0.86765 0.90605 1.45870 1.68008 1.16228 1.05473 1.21243 0.76140 0.88639 0.83867 1.90693 1.50103 1.23157 1.82978 1.21583 1.05740 0.97816 0.91084 1.21653 0.98964 0.94417 0.90153 1.61953 1.48105 1.10615 1.05783 1.22277 0.92686 0.92366 1.00893 1.21579 1.02090 0.97188 0.94343 1.21602 0.99341 0.97696 0.97401 1.21571 0.99451 0.96065 0.97997 1.22137 0.99522 0.96963 0.88986 1.23160 0.97990 1.00172 0.96534 1.21064 0.93736 0.88727 0.90901 1.44726 1.58552 1.29601 1.00951 1.19321 1.35379 0.99629 0.81709 0.89806 1.25683 1.02736 0.95590 1.02051 1.70168 1.52931 1.05326 1.31521 0.85133 0.77012 0.77685 0.79701 1.21333 1.22367 1.19215 0.93465 0.91096 0.95104 0.74704 0.86542 0.86151 0.91371 0.95659 0.95609 0.89539 0.91136 0.90433 0.90783 0.92577 0.91281 0.90606 0.90933 0.95526 0.91630 0.90611 0.94431 0.98880 0.94431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.15 71.98 0.66 -4.64 16 2 C 0.15 5.78 3.48 45.34 0.16 5.93 16 3 H 0.06 1.97 7.72 -2.39 -0.02 1.95 16 4 C 0.15 5.33 2.85 46.18 0.13 5.46 16 5 H 0.08 2.98 7.27 -2.38 -0.02 2.97 16 6 N -0.70 -18.09 5.18 -436.91 -2.26 -20.36 16 7 C 0.51 13.47 7.83 87.66 0.69 14.15 16 8 O -0.59 -21.01 15.63 -3.03 -0.05 -21.06 16 9 C -0.12 -2.11 5.63 29.85 0.17 -1.94 16 10 C 0.08 1.52 4.25 86.30 0.37 1.89 16 11 N -0.54 -8.95 4.66 -896.37 -4.17 -13.12 16 12 C 0.05 0.63 5.29 86.33 0.46 1.08 16 13 C -0.11 -1.26 6.09 30.65 0.19 -1.07 16 14 C -0.12 -1.31 6.00 30.67 0.18 -1.13 16 15 C -0.11 -1.35 6.09 30.65 0.19 -1.16 16 16 C 0.05 0.80 5.46 86.33 0.47 1.28 16 17 C -0.14 -5.40 6.76 31.91 0.22 -5.19 16 18 C 0.18 9.09 5.40 86.78 0.47 9.56 16 19 N -0.61 -30.58 3.13 -668.70 -2.09 -32.67 16 20 C -0.23 -12.58 9.83 84.03 0.83 -11.75 16 21 H 0.08 4.31 7.85 -2.91 -0.02 4.29 16 22 C -0.07 -3.81 5.40 84.86 0.46 -3.35 16 23 N -0.95 -57.50 10.71 21.65 0.23 -57.27 16 24 Si 0.98 45.33 29.56 68.60 2.03 47.36 16 25 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 H 0.05 1.77 8.02 -2.38 -0.02 1.76 16 29 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.42 8.00 8.37 -92.71 -0.78 7.23 16 32 H 0.12 1.47 6.43 -2.39 -0.02 1.45 16 33 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.56 7.94 -2.39 -0.02 1.54 16 35 H 0.03 0.58 8.08 -2.39 -0.02 0.56 16 36 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.09 1.02 6.21 -2.39 -0.01 1.00 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 1.15 8.01 -2.39 -0.02 1.13 16 45 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 46 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 47 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 48 H 0.04 2.09 6.99 -2.38 -0.02 2.08 16 49 H -0.01 -0.38 8.06 -2.39 -0.02 -0.40 16 50 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -69.49 384.79 -0.57 -70.06 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.12 Total: 17.93 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 5.62 Total: 9.13 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -8.30 Total: -123.42 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.05 Total: -21.06 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -69.49 -0.57 -70.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692236708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.017 kcal (2) G-P(sol) polarization free energy of solvation -69.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds