Wall clock time and date at job start Fri Apr 10 2020 22:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48504 * 109.47118 * 239.99951 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00057 * 3 2 1 7 7 C 1.40028 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.41444 * 119.99808 * 0.27914 * 7 2 1 10 10 C 1.40383 * 119.76742 * 179.44549 * 9 7 2 11 11 C 1.39617 * 118.79530 * 179.77269 * 10 9 7 12 12 C 1.47768 * 120.84636 * 180.26202 * 11 10 9 13 13 C 1.35080 * 126.09825 * 180.23715 * 12 11 10 14 14 N 1.31412 * 114.23956 * 179.97438 * 13 12 11 15 15 C 1.29266 * 117.25717 * 0.02562 * 14 13 12 16 16 Br 1.89105 * 124.81908 * 180.02562 * 15 14 13 17 17 S 1.70950 * 110.36002 * 359.71795 * 15 14 13 18 18 C 1.40288 * 118.31064 * 0.49531 * 11 10 9 19 19 C 1.38365 * 119.40102 * 359.74751 * 18 11 10 20 20 N 1.31553 * 121.17739 * 359.97438 * 19 18 11 21 21 H 0.96991 * 119.99866 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.60022 * 0.02562 * 10 9 7 23 23 H 1.07996 * 122.87792 * 0.04099 * 13 12 11 24 24 H 1.08004 * 120.29817 * 179.72197 * 18 11 10 25 25 H 1.07991 * 119.41224 * 180.02562 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2126 0.0001 9 6 1.3004 -2.4376 -0.0049 10 6 2.0073 -3.6504 -0.0161 11 6 1.2889 -4.8475 -0.0164 12 6 1.9868 -6.1500 -0.0222 13 6 1.4006 -7.3670 -0.0276 14 7 2.2460 -8.3730 -0.0326 15 6 3.5067 -8.0870 -0.0313 16 35 4.9032 -9.3620 -0.0384 17 16 3.7320 -6.3924 -0.0309 18 6 -0.1125 -4.7825 -0.0162 19 6 -0.7351 -3.5468 -0.0103 20 7 -0.0364 -2.4322 -0.0044 21 1 -0.4849 0.8400 -0.0004 22 1 3.0872 -3.6573 -0.0202 23 1 0.3291 -7.5016 -0.0288 24 1 -0.7001 -5.6887 -0.0209 25 1 -1.8139 -3.4965 -0.0096 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244906492.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:20:06 Heat of formation + Delta-G solvation = 75.227132 kcal Electronic energy + Delta-G solvation = -14358.252090 eV Core-core repulsion = 11702.640613 eV Total energy + Delta-G solvation = -2655.611477 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 309.947 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.57349 -38.19384 -33.96979 -32.67218 -31.38614 -30.22886 -28.07867 -25.99213 -24.95056 -21.89987 -21.80740 -19.55730 -18.29192 -17.15234 -16.00109 -15.11102 -14.71488 -14.56111 -14.24621 -14.04760 -13.68842 -12.83709 -12.47354 -12.26179 -11.62366 -11.38216 -11.35390 -11.12829 -10.87478 -10.74420 -10.55489 -10.06370 -9.93481 -9.66589 -9.37593 -8.95149 -7.89063 -7.78568 -7.75974 -6.56874 -4.71106 0.41921 0.76623 1.61587 1.75938 2.46429 2.59475 3.00846 3.02549 3.06023 3.28353 3.83430 4.60174 4.71010 5.20265 5.48397 5.70169 5.88491 6.07284 6.31391 6.43880 6.62728 6.92647 7.06573 7.26065 7.35849 7.60662 7.73313 8.04324 8.45253 8.70842 9.90629 10.15136 Molecular weight = 309.95amu Principal moments of inertia in cm(-1) A = 0.032330 B = 0.003436 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.866421 B = 8147.152015 C = 9003.170803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.067 3.933 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.425 4.425 8 H 0.086 0.914 9 C 0.254 3.746 10 C -0.248 4.248 11 C 0.021 3.979 12 C -0.120 4.120 13 C 0.021 3.979 14 N -0.432 5.432 15 C -0.023 4.023 16 Br 0.037 6.963 17 S 0.213 5.787 18 C -0.291 4.291 19 C 0.130 3.870 20 N -0.477 5.477 21 H 0.276 0.724 22 H 0.102 0.898 23 H 0.185 0.815 24 H 0.101 0.899 25 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.414 -11.621 -0.069 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.104 0.896 9 C 0.130 3.870 10 C -0.273 4.273 11 C 0.012 3.988 12 C -0.242 4.242 13 C -0.132 4.132 14 N -0.148 5.148 15 C -0.375 4.375 16 Br 0.118 6.882 17 S 0.466 5.534 18 C -0.317 4.317 19 C -0.036 4.036 20 N -0.189 5.189 21 H 0.087 0.913 22 H 0.120 0.880 23 H 0.201 0.799 24 H 0.119 0.881 25 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.140 -11.117 -0.077 13.779 hybrid contribution -0.501 -0.171 -0.001 0.529 sum 7.639 -11.288 -0.077 13.630 Atomic orbital electron populations 1.70103 1.07246 1.28271 1.27497 1.26091 0.94977 1.01254 0.93575 0.86341 0.80101 0.80145 0.80044 1.18797 1.20066 1.18785 1.19641 0.94380 0.89306 1.42248 0.89614 1.18497 0.88319 0.91487 0.88679 1.21896 0.98301 0.92563 1.14527 1.17746 0.93087 0.87589 1.00370 1.25094 0.95118 0.98982 1.05053 1.21898 1.00712 0.85185 1.05426 1.66017 1.00121 1.36114 1.12528 1.27954 0.96167 0.97634 1.15771 1.96744 1.38650 1.55019 1.97800 1.84015 1.04887 0.98476 1.66039 1.21276 0.92381 0.98474 1.19551 1.22489 0.99079 0.88302 0.93689 1.68778 1.07108 1.26855 1.16207 0.91265 0.87968 0.79852 0.88080 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.04 11.46 55.55 0.64 -17.40 15 2 C 0.07 1.63 5.50 -17.34 -0.10 1.53 15 3 Si 0.91 17.67 29.56 -169.99 -5.02 12.65 15 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 5 H -0.28 -5.23 7.11 56.52 0.40 -4.83 15 6 H -0.26 -5.05 7.11 56.52 0.40 -4.64 15 7 C -0.42 -10.76 9.14 -37.69 -0.34 -11.10 15 8 H 0.09 2.01 7.85 -52.49 -0.41 1.60 15 9 C 0.25 6.57 6.55 -85.03 -0.56 6.01 15 10 C -0.25 -5.70 9.43 -38.26 -0.36 -6.06 15 11 C 0.02 0.44 5.90 -104.72 -0.62 -0.18 15 12 C -0.12 -2.17 6.44 -36.81 -0.24 -2.41 15 13 C 0.02 0.36 10.88 -18.85 -0.21 0.15 15 14 N -0.43 -7.25 10.53 -13.84 -0.15 -7.39 15 15 C -0.02 -0.35 7.88 51.68 0.41 0.06 15 16 Br 0.04 0.46 34.12 -68.01 -2.32 -1.86 15 17 S 0.21 3.31 22.35 -107.50 -2.40 0.91 15 18 C -0.29 -6.03 9.65 -38.76 -0.37 -6.40 15 19 C 0.13 2.94 11.16 -17.62 -0.20 2.74 15 20 N -0.48 -12.43 7.85 -11.24 -0.09 -12.52 15 21 H 0.28 6.35 8.29 -40.82 -0.34 6.01 15 22 H 0.10 2.17 7.47 -52.49 -0.39 1.78 15 23 H 0.18 2.71 7.08 -52.49 -0.37 2.34 15 24 H 0.10 1.78 6.97 -52.48 -0.37 1.42 15 25 H 0.13 2.46 8.06 -52.49 -0.42 2.04 15 LS Contribution 265.45 15.07 4.00 4.00 Total: -1.00 -27.20 265.45 -9.02 -36.23 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -1.10 Total: 1.05 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.58 Total: -15.65 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.40 Total: -37.32 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.02 Total: 12.65 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.40 Total: 0.91 kcal Atomic # 35 Polarization: 0.46 SS G_CDS: -2.32 Total: -1.86 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.20 -9.02 -36.23 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244906492.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.456 kcal (2) G-P(sol) polarization free energy of solvation -27.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds