Wall clock time and date at job start Fri Apr 10 2020 22:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46877 * 2 1 4 4 H 1.08993 * 109.47553 * 54.99807 * 3 2 1 5 5 C 1.50700 * 109.47172 * 175.00045 * 3 2 1 6 6 H 1.07996 * 120.00086 * 119.99252 * 5 3 2 7 7 C 1.37879 * 119.99649 * 299.99966 * 5 3 2 8 8 N 1.31509 * 120.00272 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99712 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47295 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47262 * 120.00052 * 9 7 5 12 12 H 1.48502 * 109.47169 * 239.99753 * 9 7 5 13 13 N 1.46899 * 109.46995 * 294.99669 * 3 2 1 14 14 C 1.46955 * 111.00060 * 298.80286 * 13 3 2 15 15 C 1.53057 * 109.36517 * 176.81150 * 14 13 3 16 16 N 1.46957 * 109.36528 * 58.40027 * 15 14 13 17 17 C 1.46899 * 110.99764 * 176.81392 * 16 15 14 18 18 C 1.53006 * 109.46992 * 307.66599 * 17 16 15 19 19 C 1.53112 * 109.52365 * 297.53212 * 18 17 16 20 20 C 1.53051 * 109.27588 * 182.50411 * 19 18 17 21 21 N 1.46849 * 109.57068 * 59.08035 * 20 19 18 22 22 C 1.46901 * 110.99515 * 174.19310 * 21 20 19 23 23 C 1.46840 * 111.20191 * 298.29306 * 21 20 19 24 24 C 1.53031 * 109.52402 * 61.74503 * 23 21 20 25 25 C 1.46955 * 110.87710 * 300.67861 * 16 15 14 26 26 C 1.46957 * 111.00089 * 175.00226 * 13 3 2 27 27 H 1.08995 * 109.47101 * 60.00393 * 1 2 3 28 28 H 1.09001 * 109.46791 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47043 * 299.99902 * 1 2 3 30 30 H 1.08994 * 109.47278 * 239.99654 * 2 1 3 31 31 H 1.09005 * 109.47075 * 119.99569 * 2 1 3 32 32 H 0.97004 * 120.00073 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.48847 * 296.77831 * 14 13 3 34 34 H 1.08999 * 109.49251 * 56.84600 * 14 13 3 35 35 H 1.08994 * 109.48433 * 298.42973 * 15 14 13 36 36 H 1.08999 * 109.48862 * 178.37118 * 15 14 13 37 37 H 1.08994 * 109.47323 * 67.66711 * 17 16 15 38 38 H 1.09002 * 109.46657 * 187.67136 * 17 16 15 39 39 H 1.09000 * 109.52072 * 57.66047 * 18 17 16 40 40 H 1.08994 * 109.50611 * 302.38153 * 19 18 17 41 41 H 1.09002 * 109.50353 * 62.50208 * 19 18 17 42 42 H 1.09000 * 109.40690 * 299.07380 * 20 19 18 43 43 H 1.08993 * 109.46781 * 179.13347 * 20 19 18 44 44 H 1.09000 * 109.47306 * 184.21180 * 22 21 20 45 45 H 1.09001 * 109.47617 * 304.21060 * 22 21 20 46 46 H 1.09005 * 109.47220 * 64.21434 * 22 21 20 47 47 H 1.08998 * 109.46216 * 301.72556 * 23 21 20 48 48 H 1.09000 * 109.46164 * 181.76001 * 23 21 20 49 49 H 1.09008 * 109.50389 * 180.88238 * 24 23 21 50 50 H 1.08999 * 109.53727 * 60.77915 * 24 23 21 51 51 H 1.08991 * 109.49600 * 299.35431 * 25 16 15 52 52 H 1.08994 * 109.48492 * 179.28296 * 25 16 15 53 53 H 1.08999 * 109.48725 * 303.15447 * 26 13 3 54 54 H 1.09002 * 109.48777 * 63.20176 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3376 2.1733 9 14 6.0049 0.8815 1.3818 10 1 6.5987 1.5465 0.1942 11 1 6.3989 1.6169 2.6102 12 1 6.4971 -0.5172 1.4631 13 7 1.6514 2.0993 -1.2553 14 6 2.2439 1.4150 -2.4130 15 6 1.7523 2.0792 -3.7013 16 7 2.1218 3.5015 -3.6880 17 6 1.7332 4.1581 -4.9433 18 6 2.2878 3.3636 -6.1274 19 6 3.8178 3.3576 -6.0679 20 6 4.3679 2.6152 -7.2880 21 7 3.9092 3.2782 -8.5153 22 6 4.5295 2.6753 -9.7026 23 6 2.4445 3.2532 -8.6168 24 6 1.8371 4.0160 -7.4373 25 6 1.5293 4.1857 -2.5303 26 6 2.0209 3.5216 -1.2419 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.8293 -0.0602 2.9503 33 1 3.3304 1.4846 -2.3596 34 1 1.9456 0.3666 -2.4077 35 1 0.6685 1.9856 -3.7679 36 1 2.2132 1.5917 -4.5605 37 1 0.6461 4.1991 -5.0105 38 1 2.1369 5.1704 -4.9638 39 1 1.9175 2.3394 -6.0843 40 1 4.1862 4.3834 -6.0707 41 1 4.1446 2.8554 -5.1573 42 1 4.0112 1.5853 -7.2765 43 1 5.4574 2.6223 -7.2567 44 1 4.2312 3.2322 -10.5909 45 1 5.6144 2.7069 -9.6015 46 1 4.2034 1.6395 -9.7967 47 1 2.0968 2.2203 -8.5991 48 1 2.1371 3.7238 -9.5507 49 1 0.7495 3.9839 -7.5045 50 1 2.1728 5.0527 -7.4620 51 1 0.4429 4.1161 -2.5835 52 1 1.8276 5.2340 -2.5356 53 1 1.5600 4.0089 -0.3828 54 1 3.1049 3.6150 -1.1749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178476.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:20:22 Heat of formation + Delta-G solvation = 6.549293 kcal Electronic energy + Delta-G solvation = -27645.743301 eV Core-core repulsion = 24230.836608 eV Total energy + Delta-G solvation = -3414.906692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.248 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.63883 -38.44173 -36.15382 -33.95826 -32.24240 -31.18407 -30.91044 -30.18205 -28.42262 -26.71758 -25.23950 -23.67000 -23.35912 -22.92603 -22.51708 -21.11248 -19.79681 -19.47011 -18.72647 -16.32235 -16.03921 -15.74619 -15.23302 -14.85590 -14.71053 -14.68300 -14.41926 -14.17519 -13.87793 -13.64923 -13.24404 -13.11786 -12.92421 -12.68981 -12.51312 -12.20956 -12.06270 -11.83055 -11.64921 -11.58628 -11.39445 -11.23771 -11.10848 -10.88693 -10.80442 -10.60163 -10.52386 -10.39905 -10.33617 -10.29047 -10.09499 -9.70795 -9.61838 -9.30355 -9.04399 -8.51214 -8.33279 -7.95280 -7.06376 -5.95512 -4.08494 3.27843 3.36700 3.41063 3.77116 4.17764 4.42782 4.67800 4.74350 4.77940 5.01889 5.10563 5.15729 5.21647 5.28656 5.32571 5.38358 5.41539 5.48379 5.57274 5.61830 5.62406 5.68305 5.71712 5.75999 5.91857 5.95327 5.96973 5.99015 6.06407 6.10022 6.21561 6.29972 6.32456 6.42095 6.47105 6.49417 6.64791 6.71893 6.84332 6.89232 6.92635 6.94461 7.10226 7.19873 7.34396 7.42472 7.47674 7.65485 7.79246 8.02300 8.19744 8.36982 8.50561 9.02442 9.59018 11.03401 Molecular weight = 309.25amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.003479 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.910824 B = 8045.902572 C = 8873.066384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.539 4.539 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.536 5.536 14 C 0.063 3.937 15 C 0.056 3.944 16 N -0.533 5.533 17 C 0.063 3.937 18 C -0.089 4.089 19 C -0.102 4.102 20 C 0.053 3.947 21 N -0.544 5.544 22 C 0.025 3.975 23 C 0.058 3.942 24 C -0.111 4.111 25 C 0.061 3.939 26 C 0.065 3.935 27 H 0.046 0.954 28 H 0.024 0.976 29 H 0.039 0.961 30 H 0.032 0.968 31 H 0.092 0.908 32 H 0.260 0.740 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.031 0.969 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.023 0.977 47 H 0.031 0.969 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.071 0.929 51 H 0.032 0.968 52 H 0.066 0.934 53 H 0.065 0.935 54 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.883 5.364 -18.928 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.578 4.578 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.260 5.260 14 C -0.066 4.066 15 C -0.072 4.072 16 N -0.258 5.258 17 C -0.065 4.065 18 C -0.108 4.108 19 C -0.139 4.139 20 C -0.074 4.074 21 N -0.269 5.269 22 C -0.124 4.124 23 C -0.070 4.070 24 C -0.149 4.149 25 C -0.067 4.067 26 C -0.064 4.064 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.041 0.959 47 H 0.049 0.951 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.050 0.950 52 H 0.085 0.915 53 H 0.083 0.917 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.729 5.760 -18.710 19.765 hybrid contribution 0.817 -0.931 0.126 1.245 sum -1.911 4.829 -18.584 19.296 Atomic orbital electron populations 1.21704 0.98938 0.98331 1.00506 1.21623 0.92163 0.99315 1.01938 1.19254 0.93109 0.91039 0.85815 0.94515 1.21797 0.92883 1.37702 1.05407 0.92328 1.24908 0.97739 0.95111 0.95722 1.69884 1.34647 1.38598 1.09438 0.86642 0.86367 0.77645 0.77985 1.19857 1.21091 1.21102 1.62635 1.57782 1.01258 1.04358 1.21971 0.98302 0.97385 0.88946 1.22307 0.97911 0.88262 0.98761 1.62171 1.59211 1.02745 1.01648 1.22100 0.97130 0.98079 0.89217 1.21307 0.96492 0.99533 0.93477 1.21527 0.94208 1.01411 0.96803 1.22178 0.99981 0.95517 0.89764 1.61947 1.07033 1.55465 1.02456 1.22345 0.99932 0.96995 0.93082 1.22057 0.87355 0.98717 0.98903 1.21608 0.99426 1.00285 0.93584 1.22183 0.96517 0.97184 0.90819 1.21887 0.99517 0.90285 0.94674 0.93537 0.95667 0.94231 0.94892 0.88978 0.93036 0.93572 0.91121 0.95215 0.91208 0.95500 0.91080 0.91215 0.91398 0.89976 0.95116 0.90898 0.91584 0.91428 0.95873 0.95108 0.91053 0.91763 0.91042 0.95008 0.91548 0.91668 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.80 37.16 0.36 -2.43 16 2 C -0.11 -2.63 5.07 -26.73 -0.14 -2.77 16 3 C 0.21 5.21 1.75 -68.86 -0.12 5.09 16 4 H 0.04 1.00 8.11 -51.93 -0.42 0.58 16 5 C -0.54 -14.27 7.13 -34.44 -0.25 -14.52 16 6 H 0.06 1.59 5.80 -52.49 -0.30 1.28 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.89 -24.85 11.29 55.43 0.63 -24.22 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 13 N -0.54 -11.17 4.15 -227.87 -0.95 -12.11 16 14 C 0.06 1.21 4.96 -3.76 -0.02 1.20 16 15 C 0.06 0.88 5.13 -3.76 -0.02 0.86 16 16 N -0.53 -8.05 4.21 -234.47 -0.99 -9.03 16 17 C 0.06 0.77 4.55 -3.82 -0.02 0.76 16 18 C -0.09 -0.99 1.77 -90.50 -0.16 -1.15 16 19 C -0.10 -1.19 5.16 -26.65 -0.14 -1.33 16 20 C 0.05 0.57 5.46 -3.83 -0.02 0.55 16 21 N -0.54 -5.56 4.91 -242.96 -1.19 -6.76 16 22 C 0.02 0.21 9.59 60.07 0.58 0.78 16 23 C 0.06 0.54 5.46 -3.84 -0.02 0.52 16 24 C -0.11 -1.05 5.38 -26.65 -0.14 -1.20 16 25 C 0.06 0.97 5.62 -3.76 -0.02 0.95 16 26 C 0.07 1.27 5.32 -3.76 -0.02 1.25 16 27 H 0.05 0.91 7.75 -51.93 -0.40 0.51 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.03 0.76 6.11 -51.93 -0.32 0.44 16 31 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.05 1.00 6.51 -51.93 -0.34 0.67 16 34 H 0.07 1.40 6.07 -51.93 -0.32 1.08 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 1.01 5.85 -51.93 -0.30 0.71 16 37 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.83 6.11 -51.93 -0.32 0.51 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.11 7.70 -51.93 -0.40 0.72 16 42 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 46 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 47 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 49 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 53 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 54 H 0.05 1.00 6.88 -51.93 -0.36 0.64 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -27.14 390.43 -12.40 -39.54 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -10.52 Total: 0.27 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -0.23 Total: -9.72 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -2.50 Total: -52.13 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -27.14 -12.40 -39.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178476.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.089 kcal (2) G-P(sol) polarization free energy of solvation -27.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds