Wall clock time and date at job start Fri Apr 10 2020 22:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46877 * 2 1 4 4 H 1.08993 * 109.47553 * 54.99807 * 3 2 1 5 5 C 1.50700 * 109.47172 * 175.00045 * 3 2 1 6 6 H 1.07996 * 120.00086 * 119.99252 * 5 3 2 7 7 C 1.37879 * 119.99649 * 299.99966 * 5 3 2 8 8 N 1.31509 * 120.00272 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99712 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47295 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47262 * 120.00052 * 9 7 5 12 12 H 1.48502 * 109.47169 * 239.99753 * 9 7 5 13 13 N 1.46899 * 109.46995 * 294.99669 * 3 2 1 14 14 C 1.46955 * 111.00060 * 298.80286 * 13 3 2 15 15 C 1.53057 * 109.36517 * 176.81150 * 14 13 3 16 16 N 1.46957 * 109.36528 * 58.40027 * 15 14 13 17 17 C 1.46899 * 110.99764 * 176.81392 * 16 15 14 18 18 C 1.53006 * 109.46992 * 307.66599 * 17 16 15 19 19 C 1.53112 * 109.52365 * 297.53212 * 18 17 16 20 20 C 1.53051 * 109.27588 * 182.50411 * 19 18 17 21 21 N 1.46849 * 109.57068 * 59.08035 * 20 19 18 22 22 C 1.46901 * 110.99515 * 174.19310 * 21 20 19 23 23 C 1.46840 * 111.20191 * 298.29306 * 21 20 19 24 24 C 1.53031 * 109.52402 * 61.74503 * 23 21 20 25 25 C 1.46955 * 110.87710 * 300.67861 * 16 15 14 26 26 C 1.46957 * 111.00089 * 175.00226 * 13 3 2 27 27 H 1.08995 * 109.47101 * 60.00393 * 1 2 3 28 28 H 1.09001 * 109.46791 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47043 * 299.99902 * 1 2 3 30 30 H 1.08994 * 109.47278 * 239.99654 * 2 1 3 31 31 H 1.09005 * 109.47075 * 119.99569 * 2 1 3 32 32 H 0.97004 * 120.00073 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.48847 * 296.77831 * 14 13 3 34 34 H 1.08999 * 109.49251 * 56.84600 * 14 13 3 35 35 H 1.08994 * 109.48433 * 298.42973 * 15 14 13 36 36 H 1.08999 * 109.48862 * 178.37118 * 15 14 13 37 37 H 1.08994 * 109.47323 * 67.66711 * 17 16 15 38 38 H 1.09002 * 109.46657 * 187.67136 * 17 16 15 39 39 H 1.09000 * 109.52072 * 57.66047 * 18 17 16 40 40 H 1.08994 * 109.50611 * 302.38153 * 19 18 17 41 41 H 1.09002 * 109.50353 * 62.50208 * 19 18 17 42 42 H 1.09000 * 109.40690 * 299.07380 * 20 19 18 43 43 H 1.08993 * 109.46781 * 179.13347 * 20 19 18 44 44 H 1.09000 * 109.47306 * 184.21180 * 22 21 20 45 45 H 1.09001 * 109.47617 * 304.21060 * 22 21 20 46 46 H 1.09005 * 109.47220 * 64.21434 * 22 21 20 47 47 H 1.08998 * 109.46216 * 301.72556 * 23 21 20 48 48 H 1.09000 * 109.46164 * 181.76001 * 23 21 20 49 49 H 1.09008 * 109.50389 * 180.88238 * 24 23 21 50 50 H 1.08999 * 109.53727 * 60.77915 * 24 23 21 51 51 H 1.08991 * 109.49600 * 299.35431 * 25 16 15 52 52 H 1.08994 * 109.48492 * 179.28296 * 25 16 15 53 53 H 1.08999 * 109.48725 * 303.15447 * 26 13 3 54 54 H 1.09002 * 109.48777 * 63.20176 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3376 2.1733 9 14 6.0049 0.8815 1.3818 10 1 6.5987 1.5465 0.1942 11 1 6.3989 1.6169 2.6102 12 1 6.4971 -0.5172 1.4631 13 7 1.6514 2.0993 -1.2553 14 6 2.2439 1.4150 -2.4130 15 6 1.7523 2.0792 -3.7013 16 7 2.1218 3.5015 -3.6880 17 6 1.7332 4.1581 -4.9433 18 6 2.2878 3.3636 -6.1274 19 6 3.8178 3.3576 -6.0679 20 6 4.3679 2.6152 -7.2880 21 7 3.9092 3.2782 -8.5153 22 6 4.5295 2.6753 -9.7026 23 6 2.4445 3.2532 -8.6168 24 6 1.8371 4.0160 -7.4373 25 6 1.5293 4.1857 -2.5303 26 6 2.0209 3.5216 -1.2419 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.8293 -0.0602 2.9503 33 1 3.3304 1.4846 -2.3596 34 1 1.9456 0.3666 -2.4077 35 1 0.6685 1.9856 -3.7679 36 1 2.2132 1.5917 -4.5605 37 1 0.6461 4.1991 -5.0105 38 1 2.1369 5.1704 -4.9638 39 1 1.9175 2.3394 -6.0843 40 1 4.1862 4.3834 -6.0707 41 1 4.1446 2.8554 -5.1573 42 1 4.0112 1.5853 -7.2765 43 1 5.4574 2.6223 -7.2567 44 1 4.2312 3.2322 -10.5909 45 1 5.6144 2.7069 -9.6015 46 1 4.2034 1.6395 -9.7967 47 1 2.0968 2.2203 -8.5991 48 1 2.1371 3.7238 -9.5507 49 1 0.7495 3.9839 -7.5045 50 1 2.1728 5.0527 -7.4620 51 1 0.4429 4.1161 -2.5835 52 1 1.8276 5.2340 -2.5356 53 1 1.5600 4.0089 -0.3828 54 1 3.1049 3.6150 -1.1749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255178476.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:20:21 Heat of formation + Delta-G solvation = -10.108057 kcal Electronic energy + Delta-G solvation = -27646.465618 eV Core-core repulsion = 24230.836608 eV Total energy + Delta-G solvation = -3415.629009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.248 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.73464 -39.67905 -37.58233 -35.23972 -33.96232 -32.82626 -31.82559 -31.57558 -29.67852 -28.22174 -26.63583 -24.95809 -24.64163 -24.10602 -23.90047 -22.11993 -21.32776 -20.67657 -20.24710 -18.25369 -17.40227 -16.77683 -16.47878 -16.00878 -15.85680 -15.82273 -15.66019 -15.45874 -15.30994 -15.19910 -14.82500 -14.28433 -14.21086 -13.82860 -13.64436 -13.36716 -13.26521 -13.23970 -13.06345 -12.86282 -12.81289 -12.62306 -12.45984 -12.34987 -12.14505 -12.09490 -12.05672 -12.01291 -11.68884 -11.55641 -11.29187 -11.16206 -11.12737 -11.06420 -10.87733 -10.41533 -9.27135 -9.16884 -8.88628 -8.01882 -6.23982 1.34877 1.38405 1.48305 2.40527 3.01025 3.04183 3.15902 3.45281 3.78479 3.89608 3.95984 4.13750 4.26769 4.31073 4.33436 4.39704 4.46195 4.51639 4.56142 4.57359 4.63192 4.64785 4.68856 4.73232 4.74617 4.78793 4.83631 4.89891 4.90300 4.94656 4.99269 5.01063 5.01946 5.12766 5.14033 5.18465 5.26141 5.27805 5.33047 5.40997 5.42737 5.50505 5.55479 5.64546 5.80027 6.04590 6.14306 6.17271 6.19477 6.20695 6.28520 6.43807 6.69017 6.97555 7.46552 8.92733 Molecular weight = 309.25amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.003479 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.910824 B = 8045.902572 C = 8873.066384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.106 4.106 3 C 0.221 3.779 4 H 0.002 0.998 5 C -0.545 4.545 6 H 0.047 0.953 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.280 1.280 13 N -0.531 5.531 14 C 0.068 3.932 15 C 0.070 3.930 16 N -0.544 5.544 17 C 0.067 3.933 18 C -0.084 4.084 19 C -0.096 4.096 20 C 0.057 3.943 21 N -0.555 5.555 22 C 0.024 3.976 23 C 0.057 3.943 24 C -0.104 4.104 25 C 0.072 3.928 26 C 0.066 3.934 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.062 0.938 32 H 0.261 0.739 33 H 0.017 0.983 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.086 0.914 37 H 0.036 0.964 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.026 0.974 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.024 0.976 47 H 0.028 0.972 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.070 0.930 51 H 0.038 0.962 52 H 0.086 0.914 53 H 0.059 0.941 54 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 5.994 -21.254 22.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.584 4.584 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.206 1.206 13 N -0.255 5.255 14 C -0.061 4.061 15 C -0.058 4.058 16 N -0.269 5.269 17 C -0.060 4.060 18 C -0.102 4.102 19 C -0.134 4.134 20 C -0.071 4.071 21 N -0.280 5.280 22 C -0.124 4.124 23 C -0.071 4.071 24 C -0.143 4.143 25 C -0.056 4.056 26 C -0.063 4.063 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.104 0.896 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.042 0.958 47 H 0.047 0.953 48 H 0.104 0.896 49 H 0.096 0.904 50 H 0.089 0.911 51 H 0.056 0.944 52 H 0.105 0.895 53 H 0.078 0.922 54 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -3.324 6.398 -21.058 22.258 hybrid contribution 1.021 -1.100 0.833 1.716 sum -2.304 5.298 -20.225 21.034 Atomic orbital electron populations 1.21555 0.96283 0.99774 1.00568 1.21457 0.94480 0.98175 1.00367 1.19020 0.91729 0.91490 0.86419 0.98022 1.21972 0.94136 1.37268 1.05049 0.93531 1.25571 1.01557 0.95037 0.95598 1.70001 1.36055 1.39207 1.09805 0.85732 0.81801 0.77692 0.77755 1.19947 1.20702 1.20562 1.62601 1.57491 1.01978 1.03433 1.21938 0.96467 0.97560 0.90123 1.22129 0.97989 0.88753 0.96961 1.62134 1.59640 1.02424 1.02745 1.22132 0.97746 0.98221 0.87886 1.21251 0.95740 0.99210 0.94029 1.21416 0.94892 1.00782 0.96294 1.22093 0.99968 0.95128 0.89933 1.61966 1.07744 1.55643 1.02639 1.22393 1.00050 0.97164 0.92766 1.22108 0.86779 0.98722 0.99487 1.21562 1.00265 0.99965 0.92471 1.22046 0.96648 0.97738 0.89145 1.21903 0.97772 0.89673 0.96935 0.92609 0.93525 0.94902 0.94868 0.91998 0.92989 0.96486 0.91643 0.94759 0.89627 0.94555 0.90368 0.91776 0.91983 0.92260 0.95576 0.90919 0.90320 0.91180 0.95768 0.95333 0.89574 0.90373 0.91080 0.94383 0.89533 0.92232 0.96391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.80 71.98 0.71 -4.28 16 2 C -0.11 -5.08 5.07 30.60 0.16 -4.93 16 3 C 0.22 11.09 1.75 44.17 0.08 11.17 16 4 H 0.00 0.11 8.11 -2.39 -0.02 0.09 16 5 C -0.55 -29.85 7.13 25.60 0.18 -29.66 16 6 H 0.05 2.62 5.80 -2.91 -0.02 2.61 16 7 C 0.02 1.22 5.29 84.66 0.45 1.67 16 8 N -0.91 -52.32 11.29 21.45 0.24 -52.08 16 9 Si 0.94 44.31 29.54 68.60 2.03 46.33 16 10 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 N -0.53 -22.44 4.15 -874.84 -3.63 -26.08 16 14 C 0.07 2.64 4.96 86.31 0.43 3.07 16 15 C 0.07 2.12 5.13 86.31 0.44 2.56 16 16 N -0.54 -15.65 4.21 -895.72 -3.77 -19.43 16 17 C 0.07 1.49 4.55 86.31 0.39 1.88 16 18 C -0.08 -1.67 1.77 -10.71 -0.02 -1.69 16 19 C -0.10 -2.15 5.16 30.65 0.16 -1.99 16 20 C 0.06 1.16 5.46 86.33 0.47 1.63 16 21 N -0.55 -10.23 4.91 -922.59 -4.53 -14.76 16 22 C 0.02 0.35 9.59 127.69 1.22 1.58 16 23 C 0.06 0.91 5.46 86.32 0.47 1.38 16 24 C -0.10 -1.69 5.38 30.65 0.16 -1.52 16 25 C 0.07 2.19 5.62 86.31 0.48 2.68 16 26 C 0.07 2.60 5.32 86.31 0.46 3.06 16 27 H 0.05 2.11 7.75 -2.39 -0.02 2.10 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.03 1.55 6.11 -2.39 -0.01 1.53 16 31 H 0.06 3.36 5.95 -2.38 -0.01 3.34 16 32 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 33 H 0.02 0.76 6.51 -2.39 -0.02 0.74 16 34 H 0.07 2.59 6.07 -2.39 -0.01 2.58 16 35 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 2.35 5.85 -2.39 -0.01 2.34 16 37 H 0.04 0.76 8.14 -2.39 -0.02 0.75 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.06 1.38 6.11 -2.39 -0.01 1.36 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.60 7.70 -2.39 -0.02 1.58 16 42 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.07 1.46 8.08 -2.39 -0.02 1.44 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 46 H 0.02 0.35 8.14 -2.38 -0.02 0.33 16 47 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.09 1.15 8.12 -2.39 -0.02 1.13 16 49 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 50 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 51 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 53 H 0.06 2.36 8.12 -2.39 -0.02 2.34 16 54 H 0.02 0.80 6.88 -2.39 -0.02 0.78 16 Total: -1.00 -59.33 390.43 -2.60 -61.93 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.82 Total: 17.49 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 6.25 Total: -13.41 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -11.69 Total: -112.34 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -59.33 -2.60 -61.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178476.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.822 kcal (2) G-P(sol) polarization free energy of solvation -59.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds