Wall clock time and date at job start Fri Apr 10 2020 22:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47289 * 2 1 4 4 H 1.08999 * 109.47323 * 182.74162 * 3 2 1 5 5 C 1.50697 * 109.47199 * 62.73802 * 3 2 1 6 6 H 1.08007 * 120.00038 * 274.17289 * 5 3 2 7 7 C 1.37874 * 120.00017 * 94.44565 * 5 3 2 8 8 N 1.31517 * 120.00174 * 183.72652 * 7 5 3 9 9 Si 1.86803 * 120.00006 * 3.72493 * 7 5 3 10 10 H 1.48494 * 109.47338 * 86.99172 * 9 7 5 11 11 H 1.48498 * 109.47259 * 206.99529 * 9 7 5 12 12 H 1.48508 * 109.46841 * 326.99760 * 9 7 5 13 13 N 1.46900 * 109.46871 * 302.74244 * 3 2 1 14 14 C 1.46962 * 111.00004 * 296.94595 * 13 3 2 15 15 C 1.53044 * 109.36403 * 176.81169 * 14 13 3 16 16 N 1.46955 * 109.36781 * 58.40490 * 15 14 13 17 17 C 1.46893 * 111.00675 * 176.80811 * 16 15 14 18 18 C 1.53003 * 109.47321 * 293.80059 * 17 16 15 19 19 C 1.53119 * 109.52411 * 294.87324 * 18 17 16 20 20 C 1.53038 * 109.27866 * 182.50141 * 19 18 17 21 21 N 1.46853 * 109.57552 * 59.08185 * 20 19 18 22 22 C 1.46900 * 111.00114 * 174.19581 * 21 20 19 23 23 C 1.46852 * 111.19422 * 298.29216 * 21 20 19 24 24 C 1.53031 * 109.52445 * 61.74300 * 23 21 20 25 25 C 1.46961 * 110.87951 * 300.67985 * 16 15 14 26 26 C 1.46952 * 110.99953 * 173.15072 * 13 3 2 27 27 H 1.09005 * 109.47235 * 304.02885 * 1 2 3 28 28 H 1.09006 * 109.47230 * 64.02541 * 1 2 3 29 29 H 1.08992 * 109.47508 * 184.02897 * 1 2 3 30 30 H 1.08994 * 109.47183 * 239.99889 * 2 1 3 31 31 H 1.09000 * 109.47199 * 119.99930 * 2 1 3 32 32 H 0.97004 * 119.99828 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.49239 * 296.78223 * 14 13 3 34 34 H 1.09006 * 109.48449 * 56.84614 * 14 13 3 35 35 H 1.08997 * 109.49673 * 298.43297 * 15 14 13 36 36 H 1.09004 * 109.50873 * 178.38124 * 15 14 13 37 37 H 1.09001 * 109.46827 * 53.79723 * 17 16 15 38 38 H 1.08996 * 109.47819 * 173.80175 * 17 16 15 39 39 H 1.09000 * 109.52088 * 54.99436 * 18 17 16 40 40 H 1.09002 * 109.49863 * 302.38259 * 19 18 17 41 41 H 1.09005 * 109.50180 * 62.49374 * 19 18 17 42 42 H 1.09005 * 109.40928 * 299.06738 * 20 19 18 43 43 H 1.08993 * 109.46342 * 179.12773 * 20 19 18 44 44 H 1.09000 * 109.47093 * 184.20927 * 22 21 20 45 45 H 1.09002 * 109.46762 * 304.20948 * 22 21 20 46 46 H 1.08998 * 109.47304 * 64.20425 * 22 21 20 47 47 H 1.08996 * 109.46137 * 301.72150 * 23 21 20 48 48 H 1.09000 * 109.45663 * 181.75733 * 23 21 20 49 49 H 1.09000 * 109.50363 * 180.87517 * 24 23 21 50 50 H 1.08996 * 109.53772 * 60.78030 * 24 23 21 51 51 H 1.08994 * 109.48466 * 299.35053 * 25 16 15 52 52 H 1.08998 * 109.49004 * 179.28716 * 25 16 15 53 53 H 1.09003 * 109.49172 * 303.14980 * 26 13 3 54 54 H 1.08999 * 109.49182 * 63.19614 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4429 -0.0492 5 6 1.5939 2.1331 1.2630 6 1 0.6210 2.5999 1.3084 7 6 2.4299 2.1738 2.3586 8 7 2.0133 2.7116 3.4841 9 14 4.1544 1.4649 2.2444 10 1 5.0831 2.5025 1.7287 11 1 4.6000 1.0273 3.5917 12 1 4.1511 0.3011 1.3219 13 7 1.4970 2.1538 -1.1649 14 6 1.9711 1.5506 -2.4184 15 6 1.3219 2.2681 -3.6042 16 7 1.6571 3.6979 -3.5515 17 6 1.1142 4.4093 -4.7164 18 6 1.8162 3.9208 -5.9851 19 6 3.2967 4.3081 -5.9320 20 6 3.9798 3.8723 -7.2303 21 7 3.3248 4.5219 -8.3730 22 6 4.0405 4.2346 -9.6232 23 6 1.9140 4.1263 -8.4714 24 6 1.1689 4.5711 -7.2109 25 6 1.1830 4.3012 -2.2981 26 6 1.8322 3.5836 -1.1122 27 1 -0.3634 0.5751 0.8517 28 1 -0.3634 0.4501 -0.9239 29 1 -0.3634 -1.0250 0.0722 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.6016 2.7406 4.2548 33 1 3.0547 1.6494 -2.4825 34 1 1.7000 0.4950 -2.4393 35 1 0.2399 2.1462 -3.5551 36 1 1.6939 1.8415 -4.5358 37 1 0.0446 4.2143 -4.7951 38 1 1.2806 5.4800 -4.5985 39 1 1.7257 2.8370 -6.0572 40 1 3.3863 5.3886 -5.8196 41 1 3.7723 3.8128 -5.0854 42 1 3.9027 2.7900 -7.3346 43 1 5.0306 4.1604 -7.2023 44 1 3.5789 4.7874 -10.4414 45 1 5.0829 4.5372 -9.5228 46 1 3.9910 3.1662 -9.8330 47 1 1.8466 3.0429 -8.5699 48 1 1.4645 4.5989 -9.3448 49 1 0.1253 4.2636 -7.2774 50 1 1.2235 5.6558 -7.1189 51 1 0.0995 4.2024 -2.2341 52 1 1.4541 5.3567 -2.2772 53 1 1.4598 4.0104 -0.1809 54 1 2.9143 3.7056 -1.1610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178477.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:20:26 Heat of formation + Delta-G solvation = 5.558412 kcal Electronic energy + Delta-G solvation = -27476.862157 eV Core-core repulsion = 24061.912497 eV Total energy + Delta-G solvation = -3414.949660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.248 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.63068 -38.56204 -36.25837 -34.06492 -32.29891 -31.50568 -30.97418 -30.37159 -28.48032 -26.95161 -25.41903 -23.83677 -23.39260 -23.05358 -22.46186 -21.21098 -19.80814 -19.58447 -18.71645 -16.74601 -16.09470 -15.92547 -15.29700 -14.96513 -14.76322 -14.68896 -14.43739 -14.15773 -13.96143 -13.75183 -13.43973 -13.16301 -12.98597 -12.91504 -12.57255 -12.44961 -12.29587 -12.06955 -11.91745 -11.67023 -11.46159 -11.31386 -11.08466 -11.00987 -10.87411 -10.69971 -10.64268 -10.43632 -10.36065 -10.29840 -10.11191 -9.84744 -9.78993 -9.60553 -8.86360 -8.57213 -8.56147 -8.04459 -7.23698 -6.08532 -4.06393 3.26515 3.35589 3.37738 3.71238 4.09278 4.40221 4.63019 4.68449 4.73772 4.82123 4.96846 5.10755 5.15169 5.26586 5.27004 5.32013 5.34304 5.39139 5.50545 5.56302 5.57301 5.60699 5.64640 5.68214 5.80293 5.86860 5.89458 5.92665 5.96268 6.04944 6.09066 6.11108 6.24480 6.25857 6.27124 6.38903 6.41000 6.43037 6.67099 6.77598 6.83287 6.83789 6.87240 7.00176 7.08602 7.19683 7.32799 7.40613 7.42428 7.65430 8.05822 8.16682 8.67540 9.00767 9.55723 11.04148 Molecular weight = 309.25amu Principal moments of inertia in cm(-1) A = 0.022510 B = 0.003058 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.593390 B = 9154.336577 C = 9388.095191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C 0.183 3.817 4 H 0.000 1.000 5 C -0.496 4.496 6 H 0.082 0.918 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.870 3.130 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.525 5.525 14 C 0.051 3.949 15 C 0.061 3.939 16 N -0.537 5.537 17 C 0.062 3.938 18 C -0.084 4.084 19 C -0.101 4.101 20 C 0.054 3.946 21 N -0.544 5.544 22 C 0.025 3.975 23 C 0.058 3.942 24 C -0.112 4.112 25 C 0.059 3.941 26 C 0.070 3.930 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.021 0.979 30 H 0.026 0.974 31 H 0.051 0.949 32 H 0.263 0.737 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.022 0.978 47 H 0.030 0.970 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.071 0.929 51 H 0.037 0.963 52 H 0.069 0.931 53 H 0.098 0.902 54 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.702 2.081 -22.873 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.145 4.145 3 C 0.076 3.924 4 H 0.017 0.983 5 C -0.535 4.535 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.698 3.302 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 N -0.250 5.250 14 C -0.077 4.077 15 C -0.067 4.067 16 N -0.262 5.262 17 C -0.066 4.066 18 C -0.103 4.103 19 C -0.138 4.138 20 C -0.074 4.074 21 N -0.269 5.269 22 C -0.123 4.123 23 C -0.070 4.070 24 C -0.150 4.150 25 C -0.069 4.069 26 C -0.058 4.058 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.041 0.959 47 H 0.049 0.951 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.055 0.945 52 H 0.088 0.912 53 H 0.116 0.884 54 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.772 2.624 -22.578 22.743 hybrid contribution 1.038 -1.301 -0.123 1.669 sum 1.810 1.323 -22.701 22.811 Atomic orbital electron populations 1.21459 0.95919 0.98279 1.02488 1.21656 0.96789 0.97698 0.98373 1.19732 0.92046 0.91207 0.89366 0.98261 1.20834 1.03787 1.34846 0.93995 0.90049 1.24977 0.97830 0.94802 0.95370 1.69889 1.36460 1.45225 1.01982 0.86974 0.85839 0.80218 0.77211 1.20410 1.21522 1.19106 1.62231 1.59432 1.02127 1.01247 1.22144 0.96878 0.98239 0.90480 1.22151 0.98345 0.88158 0.98029 1.62159 1.59381 1.02689 1.01944 1.22094 0.95924 0.98557 0.90049 1.21215 0.95681 0.99957 0.93460 1.21511 0.94518 1.01907 0.95911 1.22168 0.98306 0.95960 0.90951 1.61949 1.02344 1.59111 1.03490 1.22345 0.99241 0.98821 0.91943 1.22060 0.88477 0.97913 0.98560 1.21615 0.98348 1.01497 0.93550 1.22242 0.97825 0.97850 0.88943 1.21967 0.97368 0.89018 0.97433 0.91587 0.93259 0.95994 0.95553 0.93068 0.92676 0.95488 0.90977 0.94585 0.91425 0.95221 0.90998 0.91490 0.91489 0.90157 0.95201 0.90984 0.91534 0.91444 0.95898 0.95128 0.91015 0.91702 0.91014 0.94497 0.91243 0.88425 0.95637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 9.52 37.16 0.35 -2.11 16 2 C -0.11 -2.26 5.33 -26.73 -0.14 -2.40 16 3 C 0.18 4.22 1.37 -68.86 -0.09 4.12 16 4 H 0.00 -0.01 5.33 -51.93 -0.28 -0.28 16 5 C -0.50 -13.22 6.19 -34.44 -0.21 -13.43 16 6 H 0.08 2.39 7.83 -52.48 -0.41 1.98 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 8 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 9 Si 0.87 21.36 27.00 -169.99 -4.59 16.77 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.33 6.78 56.52 0.38 -5.95 16 13 N -0.53 -10.62 3.77 -227.87 -0.86 -11.48 16 14 C 0.05 0.89 5.37 -3.77 -0.02 0.87 16 15 C 0.06 0.90 5.42 -3.77 -0.02 0.88 16 16 N -0.54 -7.68 4.22 -234.47 -0.99 -8.67 16 17 C 0.06 0.73 4.35 -3.83 -0.02 0.71 16 18 C -0.08 -0.87 2.18 -90.50 -0.20 -1.07 16 19 C -0.10 -1.08 5.24 -26.65 -0.14 -1.22 16 20 C 0.05 0.53 5.46 -3.83 -0.02 0.51 16 21 N -0.54 -5.19 4.91 -242.96 -1.19 -6.39 16 22 C 0.02 0.19 9.59 60.06 0.58 0.77 16 23 C 0.06 0.51 5.46 -3.83 -0.02 0.49 16 24 C -0.11 -1.00 5.38 -26.65 -0.14 -1.15 16 25 C 0.06 0.95 5.61 -3.76 -0.02 0.93 16 26 C 0.07 1.39 5.30 -3.77 -0.02 1.37 16 27 H 0.07 1.47 7.10 -51.93 -0.37 1.10 16 28 H 0.05 0.94 7.67 -51.93 -0.40 0.55 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.50 6.54 -51.93 -0.34 0.16 16 31 H 0.05 1.14 8.12 -51.93 -0.42 0.72 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 1.21 6.29 -51.93 -0.33 0.89 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.88 6.25 -51.93 -0.32 0.55 16 37 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 38 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 39 H 0.07 0.74 6.29 -51.93 -0.33 0.42 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.99 7.83 -51.93 -0.41 0.58 16 42 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 46 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 48 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 49 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.07 1.01 8.07 -51.93 -0.42 0.60 16 53 H 0.10 2.16 6.70 -51.93 -0.35 1.81 16 54 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 392.56 15.07 5.92 5.92 Total: -1.00 -28.17 392.56 -11.87 -40.04 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -10.69 Total: -1.47 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -0.24 Total: -8.84 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -2.27 Total: -52.41 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.59 Total: 16.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.17 -11.87 -40.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178477.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.598 kcal (2) G-P(sol) polarization free energy of solvation -28.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds