Wall clock time and date at job start Fri Apr 10 2020 22:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46873 * 2 1 4 4 C 1.52997 * 109.47489 * 120.00236 * 2 1 3 5 5 N 1.46900 * 109.47286 * 174.99807 * 4 2 1 6 6 C 1.46842 * 110.99880 * 170.00036 * 5 4 2 7 7 C 1.53041 * 109.52255 * 185.83983 * 6 5 4 8 8 C 1.53121 * 109.28214 * 300.82470 * 7 6 5 9 9 N 1.46891 * 109.52712 * 177.55749 * 8 7 6 10 10 C 1.46957 * 111.00125 * 174.99865 * 9 8 7 11 11 C 1.53049 * 109.36218 * 183.19086 * 10 9 8 12 12 N 1.46960 * 109.36672 * 301.59591 * 11 10 9 13 13 C 1.46901 * 111.00304 * 183.19152 * 12 11 10 14 14 C 1.50694 * 109.47026 * 300.69276 * 13 12 11 15 15 H 1.08002 * 120.00150 * 4.81701 * 14 13 12 16 16 C 1.37876 * 120.00184 * 184.81834 * 14 13 12 17 17 N 1.31524 * 119.99618 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00397 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47276 * 59.99779 * 18 16 14 20 20 H 1.48502 * 109.47608 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47159 * 300.00114 * 18 16 14 22 22 C 1.46957 * 110.87810 * 59.32343 * 12 11 10 23 23 C 1.46964 * 111.00030 * 298.80101 * 9 8 7 24 24 C 1.53117 * 109.15931 * 57.64663 * 8 7 6 25 25 C 1.46844 * 111.00208 * 294.21494 * 5 4 2 26 26 H 1.09001 * 109.46920 * 299.99369 * 1 2 3 27 27 H 1.08999 * 109.47623 * 60.00110 * 1 2 3 28 28 H 1.09004 * 109.46701 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46920 * 240.00631 * 2 1 3 30 30 H 1.08999 * 109.47242 * 60.00251 * 3 2 1 31 31 H 1.09003 * 109.47169 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47492 * 299.99952 * 3 2 1 33 33 H 1.08998 * 109.46858 * 55.00208 * 4 2 1 34 34 H 1.08991 * 109.46896 * 295.00162 * 4 2 1 35 35 H 1.08996 * 109.46130 * 65.83009 * 6 5 4 36 36 H 1.08999 * 109.46548 * 305.85519 * 6 5 4 37 37 H 1.09001 * 109.50685 * 180.87704 * 7 6 5 38 38 H 1.09000 * 109.50159 * 60.76230 * 7 6 5 39 39 H 1.09001 * 109.52003 * 297.68543 * 8 7 6 40 40 H 1.09003 * 109.48491 * 303.15227 * 10 9 8 41 41 H 1.08988 * 109.48974 * 63.22249 * 10 9 8 42 42 H 1.09004 * 109.49059 * 61.56520 * 11 10 9 43 43 H 1.09001 * 109.48918 * 181.63280 * 11 10 9 44 44 H 1.09000 * 109.47112 * 60.68844 * 13 12 11 45 45 H 1.08996 * 109.47020 * 180.69095 * 13 12 11 46 46 H 0.96999 * 119.99654 * 179.97438 * 17 16 14 47 47 H 1.08995 * 109.48649 * 180.71501 * 22 12 11 48 48 H 1.08996 * 109.48829 * 60.64491 * 22 12 11 49 49 H 1.08995 * 109.48411 * 296.77540 * 23 9 8 50 50 H 1.08991 * 109.48781 * 56.84008 * 23 9 8 51 51 H 1.09005 * 109.50236 * 62.29455 * 24 8 7 52 52 H 1.09002 * 109.50230 * 182.40408 * 24 8 7 53 53 H 1.09008 * 109.46264 * 294.17573 * 25 5 4 54 54 H 1.09003 * 109.46438 * 54.13840 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8267 1.1903 6 6 4.0497 -1.2965 2.4700 7 6 5.5788 -1.2553 2.4200 8 6 6.0714 -2.1459 1.2760 9 7 7.5353 -2.0646 1.1860 10 6 8.0535 -2.9977 0.1758 11 6 9.5829 -2.9401 0.1690 12 7 10.0175 -1.5655 -0.1159 13 6 11.4815 -1.4842 -0.2060 14 6 12.0908 -1.9384 1.0953 15 1 11.4596 -2.3291 1.8799 16 6 13.4540 -1.8554 1.2844 17 7 14.2227 -1.3802 0.3288 18 14 14.2092 -2.4178 2.8976 19 1 13.9041 -3.8552 3.1126 20 1 15.6809 -2.2256 2.8490 21 1 13.6428 -1.6193 4.0143 22 6 9.4994 -0.6324 0.8942 23 6 7.9699 -0.6899 0.9012 24 6 5.4504 -1.6651 -0.0383 25 6 3.9251 -1.6944 0.0829 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.6766 1.9563 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6055 -1.7198 1.2950 34 1 1.7517 -0.1584 2.1368 35 1 3.7198 -2.3192 2.6520 36 1 3.6952 -0.6521 3.2745 37 1 5.9837 -1.6187 3.3645 38 1 5.9099 -0.2305 2.2518 39 1 5.7748 -3.1778 1.4641 40 1 7.7288 -4.0102 0.4156 41 1 7.6746 -2.7170 -0.8068 42 1 9.9628 -3.2471 1.1435 43 1 9.9686 -3.6100 -0.5995 44 1 11.8320 -2.1255 -1.0146 45 1 11.7766 -0.4540 -0.4053 46 1 15.1817 -1.3215 0.4620 47 1 9.8241 0.3801 0.6545 48 1 9.8783 -0.9131 1.8769 49 1 7.5901 -0.3830 -0.0733 50 1 7.5843 -0.0200 1.6696 51 1 5.7795 -0.6467 -0.2453 52 1 5.7636 -2.3214 -0.8503 53 1 3.5957 -2.7154 0.2760 54 1 3.4800 -1.3390 -0.8464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258014264.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:20:46 Heat of formation + Delta-G solvation = -15.531680 kcal Electronic energy + Delta-G solvation = -27182.893496 eV Core-core repulsion = 23767.029301 eV Total energy + Delta-G solvation = -3415.864195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.248 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.06485 -39.49406 -37.46159 -35.72368 -34.44500 -32.26160 -31.96378 -31.55174 -29.30205 -27.90249 -27.17842 -25.89684 -24.70794 -24.13744 -23.78542 -22.76975 -21.03891 -20.62241 -19.85644 -18.38069 -17.57013 -16.92200 -16.43695 -16.29967 -15.99048 -15.81725 -15.67925 -15.42159 -15.13049 -15.02804 -14.87354 -14.49055 -14.20299 -13.94656 -13.83125 -13.47875 -13.39622 -13.19193 -12.98355 -12.85872 -12.82396 -12.58430 -12.44212 -12.35607 -12.26096 -12.14598 -11.97915 -11.81024 -11.77459 -11.75435 -11.58545 -11.54596 -11.35916 -11.15070 -11.01622 -10.60579 -9.21082 -9.15190 -8.96972 -8.15393 -6.34954 1.36348 1.38012 1.46336 2.37225 2.92087 3.01010 3.08871 3.39222 3.79094 3.83014 3.97695 4.06685 4.10244 4.19338 4.25406 4.30343 4.33183 4.41698 4.44227 4.51809 4.53159 4.61654 4.65606 4.67942 4.73631 4.76763 4.79631 4.85782 4.88436 4.90219 4.97811 5.03788 5.08225 5.10388 5.12195 5.16537 5.17739 5.25030 5.25459 5.30948 5.32327 5.36370 5.43170 5.49620 5.56403 5.73420 6.03908 6.12952 6.17022 6.20797 6.24844 6.34833 6.53503 6.85622 7.36191 8.86791 Molecular weight = 309.25amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.002584 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.064314 B =10832.694574 C =10999.207257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.134 4.134 4 C 0.063 3.937 5 N -0.544 5.544 6 C 0.065 3.935 7 C -0.104 4.104 8 C 0.089 3.911 9 N -0.541 5.541 10 C 0.070 3.930 11 C 0.065 3.935 12 N -0.542 5.542 13 C 0.200 3.800 14 C -0.554 4.554 15 H 0.055 0.945 16 C 0.010 3.990 17 N -0.927 5.927 18 Si 0.958 3.042 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.271 1.271 22 C 0.067 3.933 23 C 0.072 3.928 24 C -0.142 4.142 25 C 0.066 3.934 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.023 0.977 43 H 0.062 0.938 44 H 0.003 0.997 45 H 0.006 0.994 46 H 0.265 0.735 47 H 0.059 0.941 48 H 0.021 0.979 49 H 0.041 0.959 50 H 0.088 0.912 51 H 0.062 0.938 52 H 0.064 0.936 53 H 0.033 0.967 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.522 0.499 1.920 28.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.192 4.192 4 C -0.065 4.065 5 N -0.269 5.269 6 C -0.064 4.064 7 C -0.142 4.142 8 C -0.019 4.019 9 N -0.265 5.265 10 C -0.058 4.058 11 C -0.063 4.063 12 N -0.266 5.266 13 C 0.074 3.926 14 C -0.593 4.593 15 H 0.073 0.927 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.783 3.217 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.196 1.196 22 C -0.062 4.062 23 C -0.056 4.056 24 C -0.181 4.181 25 C -0.062 4.062 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.060 0.940 42 H 0.041 0.959 43 H 0.080 0.920 44 H 0.021 0.979 45 H 0.024 0.976 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.039 0.961 49 H 0.059 0.941 50 H 0.106 0.894 51 H 0.081 0.919 52 H 0.082 0.918 53 H 0.052 0.948 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -28.135 1.000 1.787 28.210 hybrid contribution 0.963 -0.988 0.656 1.527 sum -27.173 0.012 2.444 27.283 Atomic orbital electron populations 1.21790 0.94210 1.01896 1.02241 1.21139 0.95818 0.96750 0.97494 1.21669 1.01186 0.95293 1.01021 1.22170 0.86289 0.98920 0.99074 1.61896 1.10233 1.50926 1.03837 1.22010 0.94163 0.98717 0.91461 1.21605 0.94696 0.99909 0.98021 1.21771 0.85392 0.99816 0.94897 1.62326 1.10343 1.06244 1.47556 1.22074 0.93207 0.96808 0.93680 1.21952 0.94878 0.90454 0.99057 1.62623 1.11720 1.06341 1.45960 1.19380 0.83247 0.95275 0.94730 1.21924 0.92875 1.42558 1.01926 0.92686 1.25833 0.97859 0.95119 1.00103 1.70065 1.05270 1.46663 1.34634 0.85606 0.77252 0.79010 0.79808 1.19519 1.20578 1.19623 1.21937 0.94652 0.95978 0.93658 1.22088 0.93230 0.90291 0.99974 1.22179 0.95686 1.01841 0.98427 1.21977 0.94670 0.94545 0.95047 0.92276 0.92239 0.92550 0.91711 0.92963 0.93041 0.93196 0.94830 0.90409 0.94648 0.89769 0.91056 0.91669 0.90272 0.89459 0.93964 0.95894 0.91977 0.97921 0.97631 0.92599 0.92265 0.96102 0.94131 0.89421 0.91895 0.91754 0.94834 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.19 71.98 0.66 -0.81 16 2 C -0.09 -1.21 2.84 -10.80 -0.03 -1.24 16 3 C -0.13 -1.95 9.08 71.98 0.65 -1.30 16 4 C 0.06 0.86 4.35 86.30 0.38 1.24 16 5 N -0.54 -9.12 4.11 -896.40 -3.68 -12.81 16 6 C 0.06 1.07 5.46 86.33 0.47 1.54 16 7 C -0.10 -2.11 5.25 30.65 0.16 -1.95 16 8 C 0.09 2.01 2.30 45.00 0.10 2.12 16 9 N -0.54 -15.89 4.70 -870.04 -4.09 -19.98 16 10 C 0.07 2.16 5.26 86.31 0.45 2.62 16 11 C 0.07 2.63 5.24 86.31 0.45 3.08 16 12 N -0.54 -24.38 4.92 -900.29 -4.43 -28.81 16 13 C 0.20 10.94 5.14 85.56 0.44 11.38 16 14 C -0.55 -31.61 7.67 25.60 0.20 -31.42 16 15 H 0.06 3.13 5.81 -2.91 -0.02 3.12 16 16 C 0.01 0.58 5.46 84.65 0.46 1.05 16 17 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 18 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 C 0.07 2.72 5.32 86.31 0.46 3.18 16 23 C 0.07 2.27 4.82 86.31 0.42 2.68 16 24 C -0.14 -2.97 4.68 30.64 0.14 -2.83 16 25 C 0.07 1.14 5.30 86.32 0.46 1.60 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.06 0.92 6.22 -2.39 -0.01 0.91 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.93 7.75 -2.39 -0.02 0.91 16 32 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.03 0.45 8.12 -2.39 -0.02 0.43 16 34 H 0.08 1.01 7.99 -2.39 -0.02 0.99 16 35 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 1.24 8.02 -2.39 -0.02 1.22 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.46 6.25 -2.39 -0.01 1.45 16 39 H 0.08 1.73 8.11 -2.39 -0.02 1.71 16 40 H 0.09 2.33 8.12 -2.39 -0.02 2.31 16 41 H 0.04 1.27 6.67 -2.39 -0.02 1.25 16 42 H 0.02 1.03 6.46 -2.39 -0.02 1.02 16 43 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.01 0.33 8.12 -2.39 -0.02 0.31 16 46 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 47 H 0.06 2.45 8.12 -2.39 -0.02 2.43 16 48 H 0.02 0.95 6.95 -2.39 -0.02 0.93 16 49 H 0.04 1.27 6.41 -2.39 -0.02 1.26 16 50 H 0.09 2.49 6.13 -2.39 -0.01 2.47 16 51 H 0.06 1.51 6.33 -2.38 -0.02 1.50 16 52 H 0.06 1.39 6.73 -2.39 -0.02 1.37 16 53 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 54 H 0.08 1.31 6.12 -2.39 -0.01 1.30 16 Total: -1.00 -62.36 389.39 -3.18 -65.54 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.83 Total: 14.06 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 5.88 Total: -9.07 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -11.92 Total: -117.51 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -62.36 -3.18 -65.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258014264.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.009 kcal (2) G-P(sol) polarization free energy of solvation -62.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds