Wall clock time and date at job start Fri Apr 10 2020 22:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47284 * 2 1 4 4 C 1.52994 * 109.47388 * 180.02562 * 3 2 1 5 5 H 1.09007 * 110.67093 * 308.23416 * 4 3 2 6 6 C 1.54889 * 110.75879 * 71.67135 * 4 3 2 7 7 C 1.54263 * 104.19835 * 156.25844 * 6 4 3 8 8 C 1.53874 * 106.59619 * 336.39015 * 7 6 4 9 9 C 1.54265 * 106.60177 * 0.02562 * 8 7 6 10 10 H 1.08994 * 110.48908 * 264.93234 * 9 8 7 11 11 C 1.50699 * 110.48700 * 142.41977 * 9 8 7 12 12 O 1.21284 * 120.00089 * 242.97668 * 11 9 8 13 13 N 1.34775 * 120.00304 * 62.97394 * 11 9 8 14 14 C 1.46497 * 120.00302 * 169.32675 * 13 11 9 15 15 C 1.50696 * 109.47318 * 82.72675 * 14 13 11 16 16 H 1.07997 * 119.99991 * 359.54810 * 15 14 13 17 17 C 1.37877 * 120.00068 * 179.54262 * 15 14 13 18 18 N 1.31514 * 120.00007 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00027 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47147 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47081 * 120.00153 * 19 17 15 22 22 H 1.48491 * 109.47157 * 239.99970 * 19 17 15 23 23 C 1.46508 * 119.99603 * 349.32579 * 13 11 9 24 24 C 1.53002 * 109.47047 * 47.10136 * 23 13 11 25 25 C 1.52998 * 109.46807 * 167.09820 * 23 13 11 26 26 C 1.52996 * 109.47163 * 287.10199 * 23 13 11 27 27 C 1.53005 * 109.47124 * 320.65220 * 26 23 13 28 28 H 1.08994 * 109.47242 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46936 * 299.99721 * 1 2 3 30 30 H 1.08997 * 109.47474 * 59.99771 * 1 2 3 31 31 H 1.08998 * 109.46853 * 240.00439 * 2 1 3 32 32 H 1.08997 * 109.47474 * 120.00229 * 2 1 3 33 33 H 1.09004 * 109.47299 * 59.99932 * 3 2 1 34 34 H 1.09006 * 109.47213 * 300.00391 * 3 2 1 35 35 H 1.08996 * 110.48581 * 37.57664 * 6 4 3 36 36 H 1.09003 * 110.48601 * 274.94091 * 6 4 3 37 37 H 1.08996 * 110.03162 * 217.10649 * 7 6 4 38 38 H 1.09000 * 110.02954 * 95.67264 * 7 6 4 39 39 H 1.09005 * 110.02992 * 119.28330 * 8 7 6 40 40 H 1.08997 * 110.03219 * 240.71227 * 8 7 6 41 41 H 1.08998 * 109.47037 * 202.73048 * 14 13 11 42 42 H 1.08998 * 109.47136 * 322.72772 * 14 13 11 43 43 H 0.96997 * 120.00129 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.47318 * 43.44259 * 24 23 13 45 45 H 1.09000 * 109.46790 * 163.43992 * 24 23 13 46 46 H 1.09005 * 109.46842 * 283.44173 * 24 23 13 47 47 H 1.09003 * 109.47041 * 64.80062 * 25 23 13 48 48 H 1.08995 * 109.47055 * 184.79787 * 25 23 13 49 49 H 1.08998 * 109.47461 * 304.79903 * 25 23 13 50 50 H 1.08997 * 109.47606 * 80.65447 * 26 23 13 51 51 H 1.09001 * 109.47065 * 200.65847 * 26 23 13 52 52 H 1.09001 * 109.47039 * 308.74067 * 27 26 23 53 53 H 1.09005 * 109.46782 * 68.73544 * 27 26 23 54 54 H 1.08998 * 109.47112 * 188.73605 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9552 0.8112 0.8002 6 6 4.1184 0.9873 -1.3758 7 6 5.5326 1.6002 -1.4409 8 6 5.5329 2.8070 -0.4863 9 6 4.1192 2.8850 0.1261 10 1 3.4970 3.5802 -0.4375 11 6 4.1933 3.2995 1.5730 12 8 3.8081 2.5446 2.4407 13 7 4.6877 4.5091 1.9031 14 6 4.5476 5.0088 3.2731 15 6 5.6434 4.4328 4.1324 16 1 6.3670 3.7559 3.7029 17 6 5.7222 4.7701 5.4669 18 7 4.8407 5.5941 5.9901 19 14 7.0809 4.0566 6.5320 20 1 7.9369 3.1639 5.7101 21 1 7.9060 5.1598 7.0865 22 1 6.4804 3.2796 7.6458 23 6 5.3652 5.3243 0.8917 24 6 4.5251 5.3530 -0.3867 25 6 5.5401 6.7498 1.4191 26 6 6.7378 4.7213 0.5865 27 6 7.3737 4.2178 1.8839 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.4966 1.3761 -2.1821 36 1 4.1714 -0.1004 -1.4243 37 1 5.7510 1.9280 -2.4572 38 1 6.2721 0.8679 -1.1172 39 1 6.2727 2.6603 0.3007 40 1 5.7516 3.7205 -1.0393 41 1 4.6202 6.0964 3.2723 42 1 3.5782 4.7096 3.6716 43 1 4.8959 5.8310 6.9291 44 1 3.4760 5.4982 -0.1289 45 1 4.8596 6.1724 -1.0229 46 1 4.6412 4.4089 -0.9190 47 1 6.2083 6.7391 2.2803 48 1 5.9665 7.3770 0.6363 49 1 4.5704 7.1487 1.7166 50 1 6.6230 3.8895 -0.1085 51 1 7.3778 5.4822 0.1398 52 1 7.3471 5.0096 2.6326 53 1 6.8185 3.3537 2.2490 54 1 8.4081 3.9315 1.6943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269758425.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:21:20 Heat of formation + Delta-G solvation = 4.580375 kcal Electronic energy + Delta-G solvation = -29226.347729 eV Core-core repulsion = 25779.062907 eV Total energy + Delta-G solvation = -3447.284822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.35085 -38.86427 -38.31219 -35.65655 -34.91060 -33.31672 -31.90961 -31.34315 -30.52714 -28.74912 -27.45460 -26.37017 -24.72910 -24.35537 -22.63945 -22.12228 -21.61844 -20.67632 -19.21383 -18.54263 -17.43606 -17.02474 -16.53340 -16.28556 -16.09542 -15.89012 -15.28058 -15.22398 -14.87359 -14.69565 -14.32025 -14.21865 -13.98551 -13.70662 -13.48646 -13.33721 -13.20831 -13.01631 -12.93688 -12.86540 -12.84231 -12.57755 -12.33950 -12.26726 -12.15408 -12.07142 -11.94380 -11.72893 -11.71316 -11.60821 -11.42458 -11.23680 -11.10841 -10.95598 -10.93560 -10.56903 -10.31064 -10.04357 -9.20935 -8.14241 -6.21697 1.30714 1.33634 1.44340 1.99306 2.35609 2.52784 3.14719 3.52691 3.69423 3.74170 3.93908 4.09485 4.14296 4.18265 4.24770 4.31219 4.41579 4.52627 4.54379 4.58430 4.66589 4.67511 4.70948 4.77273 4.80049 4.84703 4.85488 4.91727 4.97998 5.01275 5.04889 5.09932 5.12080 5.21015 5.22259 5.26470 5.27018 5.29792 5.31193 5.34952 5.39296 5.42514 5.45862 5.50001 5.53207 5.58350 5.66253 5.78760 5.82108 6.04965 6.21496 6.85263 7.02911 7.40767 7.69161 8.92987 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.013423 B = 0.005233 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.423020 B = 5349.862604 C = 6204.281910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.105 4.105 4 C -0.077 4.077 5 H 0.045 0.955 6 C -0.109 4.109 7 C -0.123 4.123 8 C -0.151 4.151 9 C -0.113 4.113 10 H 0.132 0.868 11 C 0.503 3.497 12 O -0.597 6.597 13 N -0.590 5.590 14 C 0.259 3.741 15 C -0.519 4.519 16 H 0.078 0.922 17 C 0.001 3.999 18 N -0.936 5.936 19 Si 0.951 3.049 20 H -0.268 1.268 21 H -0.273 1.273 22 H -0.288 1.288 23 C 0.161 3.839 24 C -0.202 4.202 25 C -0.144 4.144 26 C -0.201 4.201 27 C -0.144 4.144 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.025 0.975 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.137 0.863 41 H 0.036 0.964 42 H -0.026 1.026 43 H 0.260 0.740 44 H 0.047 0.953 45 H 0.093 0.907 46 H 0.122 0.878 47 H 0.040 0.960 48 H 0.094 0.906 49 H 0.041 0.959 50 H 0.151 0.849 51 H 0.085 0.915 52 H 0.045 0.955 53 H 0.029 0.971 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 -4.473 -23.055 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.143 4.143 4 C -0.096 4.096 5 H 0.064 0.936 6 C -0.146 4.146 7 C -0.160 4.160 8 C -0.186 4.186 9 C -0.134 4.134 10 H 0.150 0.850 11 C 0.292 3.708 12 O -0.478 6.478 13 N -0.321 5.321 14 C 0.137 3.863 15 C -0.558 4.558 16 H 0.096 0.904 17 C -0.196 4.196 18 N -0.578 5.578 19 Si 0.777 3.223 20 H -0.193 1.193 21 H -0.198 1.198 22 H -0.214 1.214 23 C 0.077 3.923 24 C -0.258 4.258 25 C -0.202 4.202 26 C -0.238 4.238 27 C -0.201 4.201 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.154 0.846 41 H 0.054 0.946 42 H -0.008 1.008 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.139 0.861 47 H 0.060 0.940 48 H 0.112 0.888 49 H 0.060 0.940 50 H 0.168 0.832 51 H 0.103 0.897 52 H 0.064 0.936 53 H 0.048 0.952 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.070 -4.734 -22.431 22.925 hybrid contribution 0.308 0.034 2.469 2.488 sum 0.378 -4.700 -19.962 20.512 Atomic orbital electron populations 1.21769 0.95436 1.01952 1.01621 1.21477 0.96177 0.96255 1.01710 1.21535 0.94391 0.97399 1.00963 1.21986 0.95302 0.93947 0.98343 0.93609 1.22419 0.96277 1.00802 0.95138 1.22242 0.97136 0.96359 1.00273 1.23580 0.94173 1.01354 0.99516 1.22802 1.00132 0.99397 0.91049 0.85027 1.21219 0.76718 0.80790 0.92081 1.90626 1.51389 1.52492 1.53266 1.48295 1.55495 1.17456 1.10850 1.18769 0.94196 0.94598 0.78728 1.22312 1.12650 1.26323 0.94492 0.90400 1.25758 0.98514 0.96004 0.99330 1.70076 1.37389 1.36830 1.13541 0.85609 0.79558 0.78425 0.78743 1.19269 1.19818 1.21427 1.20649 0.92860 0.90571 0.88182 1.23393 0.99101 1.06750 0.96587 1.22061 1.01127 0.95354 1.01618 1.23835 0.94849 1.05296 0.99772 1.22007 0.98708 1.00748 0.98616 0.91917 0.94464 0.91422 0.90019 0.94343 0.95584 0.89950 0.89156 0.91073 0.88361 0.92187 0.91309 0.84616 0.94591 1.00791 0.93119 0.93370 0.88847 0.86076 0.94049 0.88768 0.94020 0.83236 0.89672 0.93573 0.95175 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.91 71.98 0.71 -2.33 16 2 C -0.12 -2.71 5.83 30.60 0.18 -2.53 16 3 C -0.11 -2.74 4.71 30.59 0.14 -2.59 16 4 C -0.08 -2.07 1.90 -9.51 -0.02 -2.08 16 5 H 0.05 1.61 7.50 -2.38 -0.02 1.59 16 6 C -0.11 -1.88 5.69 31.67 0.18 -1.70 16 7 C -0.12 -1.95 6.80 31.32 0.21 -1.74 16 8 C -0.15 -3.21 3.20 31.32 0.10 -3.11 16 9 C -0.11 -3.17 1.56 -10.47 -0.02 -3.19 16 10 H 0.13 3.09 5.17 -2.39 -0.01 3.08 16 11 C 0.50 21.38 6.05 87.66 0.53 21.91 16 12 O -0.60 -32.36 15.40 -3.04 -0.05 -32.41 16 13 N -0.59 -25.13 1.55 -779.09 -1.21 -26.34 16 14 C 0.26 14.21 4.54 85.63 0.39 14.60 16 15 C -0.52 -30.32 7.26 25.60 0.19 -30.13 16 16 H 0.08 4.49 4.15 -2.91 -0.01 4.48 16 17 C 0.00 0.05 5.46 84.65 0.46 0.51 16 18 N -0.94 -58.79 13.29 21.45 0.28 -58.50 16 19 Si 0.95 47.35 29.54 68.60 2.03 49.38 16 20 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 23 C 0.16 4.99 0.73 3.60 0.00 4.99 16 24 C -0.20 -4.35 6.65 71.98 0.48 -3.87 16 25 C -0.14 -4.66 6.93 71.98 0.50 -4.16 16 26 C -0.20 -5.46 4.31 30.59 0.13 -5.33 16 27 C -0.14 -5.30 7.16 71.98 0.52 -4.78 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.48 7.65 -2.39 -0.02 1.46 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.03 0.88 8.06 -2.38 -0.02 0.86 16 34 H 0.08 1.67 7.99 -2.38 -0.02 1.66 16 35 H 0.09 1.15 7.93 -2.39 -0.02 1.14 16 36 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.88 4.97 -2.38 -0.01 1.87 16 40 H 0.14 2.11 3.88 -2.39 -0.01 2.10 16 41 H 0.04 2.00 5.30 -2.39 -0.01 1.99 16 42 H -0.03 -1.68 7.82 -2.39 -0.02 -1.70 16 43 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.05 1.17 7.75 -2.39 -0.02 1.15 16 45 H 0.09 1.45 7.97 -2.39 -0.02 1.43 16 46 H 0.12 2.11 2.32 -2.38 -0.01 2.10 16 47 H 0.04 1.61 6.44 -2.39 -0.02 1.60 16 48 H 0.09 2.22 8.06 -2.39 -0.02 2.20 16 49 H 0.04 1.45 7.34 -2.39 -0.02 1.43 16 50 H 0.15 3.30 2.04 -51.75 -0.11 3.20 16 51 H 0.08 1.87 7.97 -2.39 -0.02 1.85 16 52 H 0.05 1.99 5.41 -2.39 -0.01 1.98 16 53 H 0.03 1.32 4.84 -2.38 -0.01 1.30 16 54 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -77.98 373.76 6.53 -71.46 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.78 Total: 21.95 kcal Atomic # 6 Polarization: -30.23 SS G_CDS: 4.69 Total: -25.54 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -0.92 Total: -84.84 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -0.05 Total: -32.41 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -77.98 6.53 -71.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269758425.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.037 kcal (2) G-P(sol) polarization free energy of solvation -77.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds