Wall clock time and date at job start Fri Apr 10 2020 22:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47283 * 2 1 4 4 C 1.52998 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.81179 * 51.66810 * 4 3 2 6 6 C 1.54886 * 110.76119 * 288.33425 * 4 3 2 7 7 C 1.54261 * 104.19955 * 203.74391 * 6 4 3 8 8 C 1.53877 * 106.59796 * 23.60494 * 7 6 4 9 9 C 1.54267 * 106.59879 * 0.02562 * 8 7 6 10 10 H 1.09003 * 110.48501 * 95.19708 * 9 8 7 11 11 C 1.50696 * 110.48732 * 217.71210 * 9 8 7 12 12 O 1.21273 * 120.00308 * 106.47862 * 11 9 8 13 13 N 1.34783 * 119.99887 * 286.47538 * 11 9 8 14 14 C 1.46490 * 120.00259 * 190.12751 * 13 11 9 15 15 C 1.50702 * 109.47171 * 264.65673 * 14 13 11 16 16 H 1.08001 * 120.00262 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00012 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99978 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99984 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47105 * 269.99877 * 19 17 15 21 21 H 1.48498 * 109.47043 * 30.00066 * 19 17 15 22 22 H 1.48503 * 109.46914 * 150.00328 * 19 17 15 23 23 C 1.46505 * 119.99818 * 10.13057 * 13 11 9 24 24 C 1.53003 * 109.47122 * 74.31485 * 23 13 11 25 25 C 1.52995 * 109.46956 * 194.31446 * 23 13 11 26 26 C 1.53002 * 109.46976 * 314.31526 * 23 13 11 27 27 C 1.53000 * 109.47103 * 322.02688 * 26 23 13 28 28 H 1.09002 * 109.46583 * 299.99469 * 1 2 3 29 29 H 1.08997 * 109.47171 * 59.99179 * 1 2 3 30 30 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46583 * 240.00531 * 2 1 3 32 32 H 1.09001 * 109.47651 * 120.00891 * 2 1 3 33 33 H 1.09002 * 109.46877 * 60.00711 * 3 2 1 34 34 H 1.09001 * 109.47504 * 300.00980 * 3 2 1 35 35 H 1.09005 * 110.48647 * 85.05771 * 6 4 3 36 36 H 1.09004 * 110.59662 * 322.47727 * 6 4 3 37 37 H 1.09008 * 110.03118 * 264.32680 * 7 6 4 38 38 H 1.08994 * 110.03631 * 142.89165 * 7 6 4 39 39 H 1.08998 * 110.03068 * 240.72031 * 8 7 6 40 40 H 1.08996 * 110.06882 * 119.31208 * 8 7 6 41 41 H 1.08997 * 109.47698 * 144.65848 * 14 13 11 42 42 H 1.09004 * 109.47535 * 24.65228 * 14 13 11 43 43 H 0.96998 * 120.00402 * 179.97438 * 18 17 15 44 44 H 1.08992 * 109.46986 * 80.27979 * 24 23 13 45 45 H 1.09003 * 109.46726 * 200.27743 * 24 23 13 46 46 H 1.09002 * 109.47083 * 320.27480 * 24 23 13 47 47 H 1.09005 * 109.47124 * 60.00172 * 25 23 13 48 48 H 1.09006 * 109.47369 * 179.97438 * 25 23 13 49 49 H 1.08997 * 109.47130 * 299.99769 * 25 23 13 50 50 H 1.08994 * 109.47179 * 82.02329 * 26 23 13 51 51 H 1.08999 * 109.47006 * 202.02540 * 26 23 13 52 52 H 1.09000 * 109.47367 * 180.61666 * 27 26 23 53 53 H 1.09006 * 109.47081 * 300.60838 * 27 26 23 54 54 H 1.08995 * 109.47489 * 60.61304 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9576 0.8105 -0.7983 6 6 4.1185 0.9871 1.3757 7 6 5.5326 1.6001 1.4409 8 6 5.5330 2.8070 0.4863 9 6 4.1188 2.8857 -0.1251 10 1 3.4982 3.5829 0.4377 11 6 4.1924 3.2971 -1.5730 12 8 3.9886 2.4809 -2.4464 13 7 4.4845 4.5723 -1.8971 14 6 4.3401 5.0275 -3.2820 15 6 5.6703 4.9310 -3.9838 16 1 6.5365 4.5666 -3.4515 17 6 5.7812 5.3070 -5.3057 18 7 6.9419 5.2222 -5.9182 19 14 4.2829 5.9366 -6.2265 20 1 3.5807 4.7961 -6.8680 21 1 3.3644 6.6114 -5.2746 22 1 4.7127 6.9029 -7.2691 23 6 4.9465 5.5032 -0.8645 24 6 6.3953 5.1776 -0.4956 25 6 4.8651 6.9356 -1.3958 26 6 4.0616 5.3684 0.3764 27 6 2.6103 5.1463 -0.0539 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 1.6768 1.9563 0.8901 34 1 1.6766 1.9565 -0.8899 35 1 4.1714 -0.1006 1.4241 36 1 3.4973 1.3742 2.1835 37 1 6.2722 0.8677 1.1171 38 1 5.7510 1.9278 2.4572 39 1 6.2727 2.6603 -0.3006 40 1 5.7520 3.7207 1.0387 41 1 3.9992 6.0628 -3.2906 42 1 3.6117 4.4008 -3.7965 43 1 7.0199 5.4864 -6.8483 44 1 7.0650 5.6057 -1.2414 45 1 6.6244 5.5991 0.4832 46 1 6.5283 4.0962 -0.4657 47 1 3.8330 7.1676 -1.6586 48 1 5.2084 7.6283 -0.6274 49 1 5.4955 7.0316 -2.2798 50 1 4.3979 4.5198 0.9720 51 1 4.1289 6.2793 0.9713 52 1 1.9782 5.0612 0.8301 53 1 2.2774 5.9899 -0.6586 54 1 2.5411 4.2297 -0.6396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269758426.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:21:24 Heat of formation + Delta-G solvation = -24.214226 kcal Electronic energy + Delta-G solvation = -29236.855791 eV Core-core repulsion = 25788.322341 eV Total energy + Delta-G solvation = -3448.533450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.43924 -38.86879 -38.26624 -35.59960 -35.05352 -33.56028 -32.28863 -31.04373 -30.35187 -29.25310 -27.78696 -26.02806 -24.59895 -24.19333 -22.66011 -22.16897 -21.48535 -20.77216 -19.22326 -19.10935 -17.52847 -17.31305 -16.71759 -16.40909 -16.01589 -15.75920 -15.44868 -15.24079 -14.77460 -14.70530 -14.55627 -14.14398 -13.96736 -13.77639 -13.71777 -13.46227 -13.32253 -13.12866 -12.98442 -12.88893 -12.77933 -12.60415 -12.40285 -12.26192 -12.17975 -12.14290 -11.98154 -11.81860 -11.71295 -11.63956 -11.41948 -11.32623 -11.23770 -11.11120 -11.02771 -10.82825 -10.74404 -10.44122 -9.27567 -8.33461 -6.35482 1.26399 1.30633 1.38550 1.86446 2.28130 2.37560 3.00535 3.50259 3.67195 3.71196 3.85076 4.03015 4.07308 4.16902 4.20082 4.29698 4.35749 4.39996 4.51593 4.60050 4.62426 4.64449 4.67847 4.73682 4.77259 4.81015 4.82554 4.86318 4.92887 4.95533 4.97561 5.00227 5.01261 5.07657 5.09695 5.14891 5.17747 5.22185 5.26739 5.27798 5.33845 5.36920 5.41063 5.47796 5.48739 5.53588 5.55646 5.59612 5.64558 5.83915 6.28375 6.65443 6.87190 7.24477 7.54729 8.83660 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.005210 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.677252 B = 5372.535258 C = 6061.493042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.080 4.080 5 H 0.043 0.957 6 C -0.108 4.108 7 C -0.122 4.122 8 C -0.126 4.126 9 C -0.142 4.142 10 H 0.168 0.832 11 C 0.509 3.491 12 O -0.601 6.601 13 N -0.588 5.588 14 C 0.223 3.777 15 C -0.517 4.517 16 H 0.029 0.971 17 C 0.011 3.989 18 N -0.947 5.947 19 Si 0.939 3.061 20 H -0.280 1.280 21 H -0.240 1.240 22 H -0.274 1.274 23 C 0.164 3.836 24 C -0.187 4.187 25 C -0.150 4.150 26 C -0.154 4.154 27 C -0.169 4.169 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.039 0.961 40 H 0.110 0.890 41 H 0.050 0.950 42 H 0.005 0.995 43 H 0.266 0.734 44 H 0.027 0.973 45 H 0.099 0.901 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.094 0.906 49 H 0.041 0.959 50 H 0.110 0.890 51 H 0.106 0.894 52 H 0.088 0.912 53 H 0.049 0.951 54 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.260 -1.699 22.901 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.141 4.141 4 C -0.099 4.099 5 H 0.062 0.938 6 C -0.145 4.145 7 C -0.159 4.159 8 C -0.163 4.163 9 C -0.161 4.161 10 H 0.184 0.816 11 C 0.300 3.700 12 O -0.483 6.483 13 N -0.318 5.318 14 C 0.101 3.899 15 C -0.555 4.555 16 H 0.047 0.953 17 C -0.186 4.186 18 N -0.588 5.588 19 Si 0.762 3.238 20 H -0.206 1.206 21 H -0.163 1.163 22 H -0.199 1.199 23 C 0.080 3.920 24 C -0.244 4.244 25 C -0.207 4.207 26 C -0.191 4.191 27 C -0.225 4.225 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.058 0.942 40 H 0.128 0.872 41 H 0.067 0.933 42 H 0.023 0.977 43 H 0.075 0.925 44 H 0.046 0.954 45 H 0.117 0.883 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.113 0.887 49 H 0.060 0.940 50 H 0.128 0.872 51 H 0.124 0.876 52 H 0.106 0.894 53 H 0.068 0.932 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.269 -2.043 22.280 24.618 hybrid contribution 0.270 0.065 -2.214 2.232 sum -9.999 -1.977 20.066 22.507 Atomic orbital electron populations 1.21761 0.95173 1.01946 1.01803 1.21494 0.96355 0.96331 1.01654 1.21532 0.93769 0.97421 1.01341 1.22035 0.95713 0.94002 0.98186 0.93837 1.22411 0.95894 1.00727 0.95492 1.22195 0.97451 0.96199 1.00083 1.22847 0.94012 1.01214 0.98237 1.23650 1.00723 1.00588 0.91168 0.81578 1.21213 0.75226 0.81213 0.92378 1.90611 1.52971 1.51706 1.53014 1.48128 1.64562 1.10340 1.08801 1.19295 0.94975 0.95170 0.80509 1.21502 0.95249 1.42258 0.96538 0.95311 1.25775 0.98851 0.95754 0.98267 1.70049 1.26252 1.50255 1.12195 0.85847 0.79976 0.78722 0.79245 1.20639 1.16340 1.19876 1.20627 0.94167 0.89394 0.87829 1.23048 0.95381 1.04078 1.01913 1.22116 1.01954 0.94767 1.01901 1.22743 0.94348 1.05739 0.96221 1.22193 0.96708 1.01454 1.02194 0.91299 0.94145 0.92102 0.94431 0.90243 0.89495 0.95094 0.91131 0.88763 0.92793 0.88536 0.94242 0.87247 0.93254 0.97659 0.92508 0.95404 0.88265 0.90492 0.92284 0.88747 0.93994 0.87208 0.87605 0.89368 0.93180 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.91 71.98 0.71 -2.02 16 2 C -0.12 -2.59 5.83 30.59 0.18 -2.41 16 3 C -0.10 -2.47 4.71 30.59 0.14 -2.33 16 4 C -0.08 -2.17 1.99 -9.50 -0.02 -2.19 16 5 H 0.04 1.56 7.34 -2.39 -0.02 1.54 16 6 C -0.11 -1.96 5.69 31.67 0.18 -1.78 16 7 C -0.12 -2.28 6.80 31.32 0.21 -2.07 16 8 C -0.13 -3.12 3.76 31.32 0.12 -3.00 16 9 C -0.14 -4.01 0.98 -10.46 -0.01 -4.02 16 10 H 0.17 3.73 2.64 -2.39 -0.01 3.72 16 11 C 0.51 21.35 4.92 87.65 0.43 21.78 16 12 O -0.60 -32.00 15.30 -3.01 -0.05 -32.05 16 13 N -0.59 -24.49 1.75 -779.09 -1.36 -25.85 16 14 C 0.22 11.33 3.57 85.64 0.31 11.63 16 15 C -0.52 -31.24 9.43 25.60 0.24 -31.00 16 16 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 17 C 0.01 0.66 5.47 84.65 0.46 1.13 16 18 N -0.95 -61.49 13.96 21.45 0.30 -61.19 16 19 Si 0.94 46.30 27.47 68.60 1.88 48.18 16 20 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 21 H -0.24 -10.71 6.54 99.48 0.65 -10.06 16 22 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 23 C 0.16 5.08 0.72 3.60 0.00 5.08 16 24 C -0.19 -5.73 7.47 71.98 0.54 -5.19 16 25 C -0.15 -4.62 6.93 71.98 0.50 -4.12 16 26 C -0.15 -3.16 4.28 30.60 0.13 -3.03 16 27 C -0.17 -3.74 7.98 71.98 0.57 -3.16 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.38 7.65 -2.39 -0.02 1.36 16 33 H 0.09 1.56 7.99 -2.39 -0.02 1.54 16 34 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 1.21 8.09 -2.38 -0.02 1.19 16 36 H 0.09 1.22 7.94 -2.38 -0.02 1.20 16 37 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.04 1.29 6.19 -2.39 -0.01 1.27 16 40 H 0.11 2.09 4.53 -2.39 -0.01 2.08 16 41 H 0.05 2.33 4.95 -2.39 -0.01 2.32 16 42 H 0.01 0.30 6.85 -2.38 -0.02 0.28 16 43 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 44 H 0.03 1.04 7.97 -2.39 -0.02 1.02 16 45 H 0.10 2.09 7.86 -2.39 -0.02 2.07 16 46 H 0.08 2.50 3.23 -2.39 -0.01 2.50 16 47 H 0.06 1.74 6.76 -2.38 -0.02 1.73 16 48 H 0.09 2.15 8.12 -2.38 -0.02 2.13 16 49 H 0.04 1.64 6.90 -2.39 -0.02 1.62 16 50 H 0.11 1.93 3.06 -2.39 -0.01 1.92 16 51 H 0.11 1.54 7.94 -2.39 -0.02 1.52 16 52 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 53 H 0.05 1.19 7.38 -2.38 -0.02 1.18 16 54 H 0.04 1.21 4.38 -2.39 -0.01 1.20 16 Total: -1.00 -80.51 378.93 6.29 -74.22 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.81 Total: 23.38 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 4.70 Total: -26.69 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -1.06 Total: -87.04 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.05 Total: -32.05 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.88 Total: 48.18 kcal Total: -80.51 6.29 -74.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269758426.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.004 kcal (2) G-P(sol) polarization free energy of solvation -80.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds