Wall clock time and date at job start Fri Apr 10 2020 22:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 111.00173 * 2 1 4 4 C 1.46901 * 111.00228 * 123.95489 * 2 1 3 5 5 C 1.53000 * 109.46769 * 66.04241 * 4 2 1 6 6 N 1.46901 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.46846 * 110.99738 * 66.05101 * 6 5 4 8 8 C 1.53037 * 109.54802 * 174.16002 * 7 6 5 9 9 C 1.53132 * 109.26860 * 59.18991 * 8 7 6 10 10 C 1.53064 * 109.14449 * 302.40362 * 9 8 7 11 11 C 1.53057 * 109.46255 * 177.65229 * 10 9 8 12 12 C 1.53129 * 109.15218 * 62.35414 * 11 10 9 13 13 C 1.53045 * 109.27148 * 57.58381 * 12 11 10 14 14 N 1.46838 * 109.55256 * 300.82077 * 13 12 11 15 15 C 1.46898 * 110.99927 * 185.83715 * 14 13 12 16 16 C 1.50706 * 109.47136 * 293.95276 * 15 14 13 17 17 H 1.08009 * 119.99734 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00136 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99845 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00047 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.46593 * 90.00004 * 20 18 16 22 22 H 1.48493 * 109.47335 * 210.00003 * 20 18 16 23 23 H 1.48502 * 109.47120 * 330.00783 * 20 18 16 24 24 C 1.46863 * 111.18909 * 61.74682 * 14 13 12 25 25 C 1.46860 * 111.00393 * 301.84070 * 6 5 4 26 26 H 1.09006 * 109.46785 * 296.04706 * 1 2 3 27 27 H 1.09005 * 109.47133 * 56.03949 * 1 2 3 28 28 H 1.08990 * 109.47113 * 176.04878 * 1 2 3 29 29 H 1.09001 * 109.47139 * 183.95526 * 3 2 1 30 30 H 1.09002 * 109.47085 * 303.95569 * 3 2 1 31 31 H 1.08999 * 109.46941 * 63.95211 * 3 2 1 32 32 H 1.09001 * 109.46874 * 306.04522 * 4 2 1 33 33 H 1.08992 * 109.47407 * 186.04539 * 4 2 1 34 34 H 1.09002 * 109.47398 * 300.00295 * 5 4 2 35 35 H 1.09001 * 109.47194 * 60.00475 * 5 4 2 36 36 H 1.08994 * 109.45784 * 294.18174 * 7 6 5 37 37 H 1.08994 * 109.46256 * 54.15418 * 7 6 5 38 38 H 1.09010 * 109.50564 * 179.12603 * 8 7 6 39 39 H 1.08996 * 109.50808 * 299.20577 * 8 7 6 40 40 H 1.08999 * 109.52104 * 62.30236 * 9 8 7 41 41 H 1.08994 * 109.52823 * 182.43035 * 9 8 7 42 42 H 1.09003 * 109.52769 * 182.25902 * 11 10 9 43 43 H 1.09003 * 109.52403 * 302.45317 * 11 10 9 44 44 H 1.08999 * 109.51021 * 177.52558 * 12 11 10 45 45 H 1.09007 * 109.50399 * 297.60600 * 12 11 10 46 46 H 1.08999 * 109.45452 * 60.84559 * 13 12 11 47 47 H 1.09002 * 109.45435 * 180.79856 * 13 12 11 48 48 H 1.08997 * 109.47288 * 53.95660 * 15 14 13 49 49 H 1.09003 * 109.47010 * 173.95740 * 15 14 13 50 50 H 0.97004 * 119.99374 * 179.97438 * 19 18 16 51 51 H 1.09004 * 109.46714 * 178.30821 * 24 14 13 52 52 H 1.09003 * 109.46657 * 58.33287 * 24 14 13 53 53 H 1.09000 * 109.46266 * 305.77152 * 25 6 5 54 54 H 1.09004 * 109.45901 * 65.74133 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9703 6 7 2.1574 -3.0085 2.1081 7 6 1.4875 -2.6228 3.3567 8 6 1.9537 -3.5375 4.4916 9 6 3.4723 -3.4162 4.6471 10 6 4.1432 -3.7753 3.3190 11 6 5.6581 -3.5999 3.4491 12 6 6.1861 -4.5658 4.5136 13 6 5.8136 -5.9985 4.1249 14 7 4.3540 -6.1141 4.0147 15 6 3.9526 -7.5073 3.7788 16 6 4.4504 -7.9516 2.4275 17 1 5.0096 -7.2675 1.8063 18 6 4.1931 -9.2317 1.9847 19 7 4.6281 -9.6196 0.8057 20 14 3.2280 -10.4157 3.0600 21 1 1.7791 -10.2873 2.7605 22 1 3.6691 -11.8065 2.7845 23 1 3.4682 -10.0940 4.4897 24 6 3.8292 -5.2303 2.9656 25 6 3.6139 -2.8552 2.2177 26 1 -0.3633 0.4513 0.9234 27 1 -0.3634 0.5741 -0.8524 28 1 -0.3633 -1.0251 -0.0708 29 1 3.0829 1.3432 -0.0709 30 1 1.5899 1.9164 -0.8524 31 1 1.7044 1.8724 0.9233 32 1 1.5612 -0.3872 2.0628 33 1 3.0797 -0.6611 1.1756 34 1 0.5472 -2.3475 0.9322 35 1 2.0658 -2.6214 0.0451 36 1 1.7362 -1.5894 3.5979 37 1 0.4087 -2.7176 3.2342 38 1 1.4678 -3.2408 5.4212 39 1 1.6925 -4.5696 4.2579 40 1 3.7298 -2.3929 4.9203 41 1 3.8145 -4.0981 5.4255 42 1 6.1335 -3.8167 2.4925 43 1 5.8821 -2.5748 3.7442 44 1 7.2704 -4.4770 4.5800 45 1 5.7413 -4.3226 5.4786 46 1 6.2708 -6.2452 3.1667 47 1 6.1758 -6.6875 4.8880 48 1 4.3816 -8.1449 4.5517 49 1 2.8655 -7.5822 3.8080 50 1 4.4473 -10.5203 0.4944 51 1 2.7498 -5.3603 2.8875 52 1 4.2950 -5.4813 2.0126 53 1 4.0794 -3.1200 1.2683 54 1 3.8527 -1.8203 2.4630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277939181.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:21:40 Heat of formation + Delta-G solvation = 9.825222 kcal Electronic energy + Delta-G solvation = -28061.486752 eV Core-core repulsion = 24646.722115 eV Total energy + Delta-G solvation = -3414.764637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.248 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.19578 -38.19367 -36.66359 -34.07178 -32.66109 -31.84871 -30.66345 -28.73206 -27.82517 -27.33490 -25.81250 -25.07741 -23.69154 -22.74594 -22.15298 -21.37639 -20.52278 -19.37226 -17.85644 -16.58311 -16.19498 -15.73762 -15.53690 -15.21967 -14.78278 -14.54237 -14.18840 -14.13318 -13.93186 -13.73955 -13.45247 -13.11730 -13.03532 -12.81897 -12.60865 -12.40949 -12.10211 -12.06429 -11.94026 -11.80253 -11.74278 -11.56738 -11.41189 -11.12362 -11.00994 -10.61144 -10.58162 -10.42235 -10.30438 -10.21958 -10.00779 -9.70518 -9.56987 -9.52680 -9.30889 -8.66781 -8.52150 -8.05073 -7.03572 -6.03214 -4.01811 3.32912 3.40015 3.44000 3.63701 4.12691 4.46071 4.72870 4.82680 4.89860 4.94752 5.03637 5.08708 5.17748 5.24657 5.25736 5.30437 5.35082 5.36080 5.38349 5.43675 5.51664 5.57976 5.64222 5.65495 5.73936 5.75870 5.84417 5.91253 5.94708 6.05211 6.07979 6.09178 6.19129 6.28606 6.34287 6.40533 6.50371 6.61023 6.62581 6.71650 6.74464 6.78126 6.84305 6.97811 7.06008 7.14779 7.16871 7.26426 7.28251 7.66636 8.19862 8.28651 8.53745 9.00647 9.60488 11.09960 Molecular weight = 309.25amu Principal moments of inertia in cm(-1) A = 0.015416 B = 0.003788 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.857710 B = 7390.959011 C = 8122.472687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.544 5.544 3 C 0.025 3.975 4 C 0.017 3.983 5 C 0.060 3.940 6 N -0.524 5.524 7 C 0.056 3.944 8 C -0.117 4.117 9 C -0.098 4.098 10 C -0.052 4.052 11 C -0.107 4.107 12 C -0.114 4.114 13 C 0.061 3.939 14 N -0.533 5.533 15 C 0.155 3.845 16 C -0.545 4.545 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.901 5.901 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.264 1.264 24 C 0.086 3.914 25 C 0.069 3.931 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.022 0.978 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.040 0.960 47 H 0.060 0.940 48 H 0.025 0.975 49 H 0.023 0.977 50 H 0.262 0.738 51 H 0.078 0.922 52 H 0.039 0.961 53 H 0.074 0.926 54 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.181 20.332 3.975 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.268 5.268 3 C -0.124 4.124 4 C -0.112 4.112 5 C -0.069 4.069 6 N -0.247 5.247 7 C -0.071 4.071 8 C -0.155 4.155 9 C -0.136 4.136 10 C -0.053 4.053 11 C -0.145 4.145 12 C -0.152 4.152 13 C -0.068 4.068 14 N -0.256 5.256 15 C 0.029 3.971 16 C -0.584 4.584 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.540 5.540 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.189 1.189 24 C -0.043 4.043 25 C -0.060 4.060 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.058 0.942 47 H 0.078 0.922 48 H 0.043 0.957 49 H 0.041 0.959 50 H 0.072 0.928 51 H 0.096 0.904 52 H 0.057 0.943 53 H 0.092 0.908 54 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.328 19.580 3.799 20.645 hybrid contribution -0.220 0.321 0.403 0.560 sum -5.548 19.901 4.202 21.083 Atomic orbital electron populations 1.22453 0.87406 1.02647 1.00211 1.61973 1.08023 1.13619 1.43155 1.22384 1.00835 0.88923 1.00248 1.22934 1.00639 0.96351 0.91303 1.22232 1.00533 0.89082 0.95063 1.62129 1.04706 1.54592 1.03288 1.22110 0.98258 0.96595 0.90181 1.21609 0.96414 1.01179 0.96295 1.21515 0.94482 0.99740 0.97858 1.20621 0.94010 0.96469 0.94207 1.21560 0.95091 0.98403 0.99451 1.21619 0.99091 0.95763 0.98765 1.21870 0.90065 0.94582 1.00287 1.62343 1.09587 1.08662 1.45054 1.20136 0.95838 0.85173 0.95997 1.21715 1.35909 0.98772 1.01977 0.90768 1.24965 0.95264 0.98116 0.94761 1.69937 1.46408 1.18829 1.18802 0.86816 0.80650 0.80325 0.81715 1.20229 1.21491 1.18895 1.21799 1.00584 0.88571 0.93312 1.22126 0.87330 0.96910 0.99601 0.95872 0.91473 0.90796 0.91390 0.91379 0.95934 0.94900 0.90590 0.90861 0.89671 0.95630 0.91456 0.92413 0.90099 0.94043 0.90056 0.92284 0.93052 0.92684 0.91775 0.94196 0.92157 0.95680 0.95862 0.92833 0.90352 0.94308 0.90789 0.95280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.32 60.07 0.56 0.74 16 2 N -0.54 -5.50 5.02 -251.25 -1.26 -6.76 16 3 C 0.02 0.21 9.57 60.07 0.57 0.78 16 4 C 0.02 0.18 4.26 -3.82 -0.02 0.17 16 5 C 0.06 0.70 5.28 -3.82 -0.02 0.68 16 6 N -0.52 -7.07 4.16 -234.71 -0.98 -8.05 16 7 C 0.06 0.69 5.05 -3.83 -0.02 0.67 16 8 C -0.12 -1.55 5.74 -26.64 -0.15 -1.71 16 9 C -0.10 -1.36 4.30 -26.63 -0.11 -1.48 16 10 C -0.05 -0.79 0.51 -154.47 -0.08 -0.87 16 11 C -0.11 -1.54 4.79 -26.64 -0.13 -1.67 16 12 C -0.11 -1.73 5.74 -26.64 -0.15 -1.88 16 13 C 0.06 1.16 5.13 -3.83 -0.02 1.14 16 14 N -0.53 -10.94 4.10 -236.13 -0.97 -11.91 16 15 C 0.16 3.76 4.20 -4.97 -0.02 3.74 16 16 C -0.54 -15.28 8.29 -34.44 -0.29 -15.56 16 17 H 0.07 2.27 6.08 -52.48 -0.32 1.95 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 20 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 23 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 24 C 0.09 1.66 3.30 -3.85 -0.01 1.64 16 25 C 0.07 0.94 3.56 -3.86 -0.01 0.93 16 26 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.07 0.51 8.12 -51.93 -0.42 0.08 16 28 H 0.07 0.64 6.47 -51.93 -0.34 0.30 16 29 H 0.07 0.56 8.12 -51.93 -0.42 0.13 16 30 H 0.07 0.50 8.12 -51.93 -0.42 0.07 16 31 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.03 0.35 6.66 -51.93 -0.35 0.01 16 33 H 0.08 0.84 6.43 -51.93 -0.33 0.51 16 34 H 0.07 0.83 6.47 -51.93 -0.34 0.49 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.03 0.30 6.75 -51.93 -0.35 -0.05 16 37 H 0.07 0.77 8.06 -51.93 -0.42 0.36 16 38 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.08 1.26 6.57 -51.93 -0.34 0.92 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 1.24 6.08 -51.93 -0.32 0.92 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.93 6.64 -51.93 -0.34 0.59 16 46 H 0.04 0.87 7.03 -51.93 -0.37 0.51 16 47 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 48 H 0.03 0.62 7.12 -51.93 -0.37 0.25 16 49 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 50 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 51 H 0.08 1.62 5.99 -51.93 -0.31 1.30 16 52 H 0.04 0.88 6.57 -51.93 -0.34 0.54 16 53 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 54 H 0.03 0.37 6.60 -51.93 -0.34 0.03 16 LS Contribution 381.08 15.07 5.74 5.74 Total: -1.00 -29.71 381.08 -11.58 -41.29 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -10.22 Total: 0.32 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 0.00 Total: -10.71 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -2.43 Total: -53.70 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.71 -11.58 -41.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939181.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.117 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds