Wall clock time and date at job start Fri Apr 10 2020 22:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 111.00173 * 2 1 4 4 C 1.46901 * 111.00228 * 123.95489 * 2 1 3 5 5 C 1.53000 * 109.46769 * 66.04241 * 4 2 1 6 6 N 1.46901 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.46846 * 110.99738 * 66.05101 * 6 5 4 8 8 C 1.53037 * 109.54802 * 174.16002 * 7 6 5 9 9 C 1.53132 * 109.26860 * 59.18991 * 8 7 6 10 10 C 1.53064 * 109.14449 * 302.40362 * 9 8 7 11 11 C 1.53057 * 109.46255 * 177.65229 * 10 9 8 12 12 C 1.53129 * 109.15218 * 62.35414 * 11 10 9 13 13 C 1.53045 * 109.27148 * 57.58381 * 12 11 10 14 14 N 1.46838 * 109.55256 * 300.82077 * 13 12 11 15 15 C 1.46898 * 110.99927 * 185.83715 * 14 13 12 16 16 C 1.50706 * 109.47136 * 293.95276 * 15 14 13 17 17 H 1.08009 * 119.99734 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00136 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99845 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00047 * 359.97438 * 18 16 15 21 21 H 1.48508 * 109.46593 * 90.00004 * 20 18 16 22 22 H 1.48493 * 109.47335 * 210.00003 * 20 18 16 23 23 H 1.48502 * 109.47120 * 330.00783 * 20 18 16 24 24 C 1.46863 * 111.18909 * 61.74682 * 14 13 12 25 25 C 1.46860 * 111.00393 * 301.84070 * 6 5 4 26 26 H 1.09006 * 109.46785 * 296.04706 * 1 2 3 27 27 H 1.09005 * 109.47133 * 56.03949 * 1 2 3 28 28 H 1.08990 * 109.47113 * 176.04878 * 1 2 3 29 29 H 1.09001 * 109.47139 * 183.95526 * 3 2 1 30 30 H 1.09002 * 109.47085 * 303.95569 * 3 2 1 31 31 H 1.08999 * 109.46941 * 63.95211 * 3 2 1 32 32 H 1.09001 * 109.46874 * 306.04522 * 4 2 1 33 33 H 1.08992 * 109.47407 * 186.04539 * 4 2 1 34 34 H 1.09002 * 109.47398 * 300.00295 * 5 4 2 35 35 H 1.09001 * 109.47194 * 60.00475 * 5 4 2 36 36 H 1.08994 * 109.45784 * 294.18174 * 7 6 5 37 37 H 1.08994 * 109.46256 * 54.15418 * 7 6 5 38 38 H 1.09010 * 109.50564 * 179.12603 * 8 7 6 39 39 H 1.08996 * 109.50808 * 299.20577 * 8 7 6 40 40 H 1.08999 * 109.52104 * 62.30236 * 9 8 7 41 41 H 1.08994 * 109.52823 * 182.43035 * 9 8 7 42 42 H 1.09003 * 109.52769 * 182.25902 * 11 10 9 43 43 H 1.09003 * 109.52403 * 302.45317 * 11 10 9 44 44 H 1.08999 * 109.51021 * 177.52558 * 12 11 10 45 45 H 1.09007 * 109.50399 * 297.60600 * 12 11 10 46 46 H 1.08999 * 109.45452 * 60.84559 * 13 12 11 47 47 H 1.09002 * 109.45435 * 180.79856 * 13 12 11 48 48 H 1.08997 * 109.47288 * 53.95660 * 15 14 13 49 49 H 1.09003 * 109.47010 * 173.95740 * 15 14 13 50 50 H 0.97004 * 119.99374 * 179.97438 * 19 18 16 51 51 H 1.09004 * 109.46714 * 178.30821 * 24 14 13 52 52 H 1.09003 * 109.46657 * 58.33287 * 24 14 13 53 53 H 1.09000 * 109.46266 * 305.77152 * 25 6 5 54 54 H 1.09004 * 109.45901 * 65.74133 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9703 6 7 2.1574 -3.0085 2.1081 7 6 1.4875 -2.6228 3.3567 8 6 1.9537 -3.5375 4.4916 9 6 3.4723 -3.4162 4.6471 10 6 4.1432 -3.7753 3.3190 11 6 5.6581 -3.5999 3.4491 12 6 6.1861 -4.5658 4.5136 13 6 5.8136 -5.9985 4.1249 14 7 4.3540 -6.1141 4.0147 15 6 3.9526 -7.5073 3.7788 16 6 4.4504 -7.9516 2.4275 17 1 5.0096 -7.2675 1.8063 18 6 4.1931 -9.2317 1.9847 19 7 4.6281 -9.6196 0.8057 20 14 3.2280 -10.4157 3.0600 21 1 1.7791 -10.2873 2.7605 22 1 3.6691 -11.8065 2.7845 23 1 3.4682 -10.0940 4.4897 24 6 3.8292 -5.2303 2.9656 25 6 3.6139 -2.8552 2.2177 26 1 -0.3633 0.4513 0.9234 27 1 -0.3634 0.5741 -0.8524 28 1 -0.3633 -1.0251 -0.0708 29 1 3.0829 1.3432 -0.0709 30 1 1.5899 1.9164 -0.8524 31 1 1.7044 1.8724 0.9233 32 1 1.5612 -0.3872 2.0628 33 1 3.0797 -0.6611 1.1756 34 1 0.5472 -2.3475 0.9322 35 1 2.0658 -2.6214 0.0451 36 1 1.7362 -1.5894 3.5979 37 1 0.4087 -2.7176 3.2342 38 1 1.4678 -3.2408 5.4212 39 1 1.6925 -4.5696 4.2579 40 1 3.7298 -2.3929 4.9203 41 1 3.8145 -4.0981 5.4255 42 1 6.1335 -3.8167 2.4925 43 1 5.8821 -2.5748 3.7442 44 1 7.2704 -4.4770 4.5800 45 1 5.7413 -4.3226 5.4786 46 1 6.2708 -6.2452 3.1667 47 1 6.1758 -6.6875 4.8880 48 1 4.3816 -8.1449 4.5517 49 1 2.8655 -7.5822 3.8080 50 1 4.4473 -10.5203 0.4944 51 1 2.7498 -5.3603 2.8875 52 1 4.2950 -5.4813 2.0126 53 1 4.0794 -3.1200 1.2683 54 1 3.8527 -1.8203 2.4630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277939181.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:21:37 Heat of formation + Delta-G solvation = -10.987936 kcal Electronic energy + Delta-G solvation = -28062.389278 eV Core-core repulsion = 24646.722115 eV Total energy + Delta-G solvation = -3415.667164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.248 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.42103 -39.28005 -37.76626 -35.63539 -34.23196 -33.47902 -31.95213 -29.64797 -29.32162 -28.49760 -27.10167 -26.02347 -25.49733 -23.69404 -23.47784 -22.45353 -22.08638 -20.59933 -19.51840 -18.36201 -17.35085 -16.71739 -16.49150 -16.41410 -16.10762 -15.84555 -15.67584 -15.39092 -15.19491 -14.99401 -14.74816 -14.54105 -14.36540 -14.02136 -13.89684 -13.48942 -13.28645 -13.24344 -13.18277 -12.90111 -12.85745 -12.76186 -12.63506 -12.46254 -12.44152 -12.21689 -11.98360 -11.83987 -11.73940 -11.67568 -11.56667 -11.38314 -10.96161 -10.86140 -10.80397 -10.75224 -9.42776 -9.02976 -8.87778 -8.30007 -6.34302 1.35278 1.36214 1.48490 2.34613 2.82052 3.05161 3.20644 3.36294 3.84903 3.85983 3.92370 3.98671 4.12354 4.24283 4.24814 4.27412 4.30910 4.43416 4.48218 4.49292 4.52399 4.64009 4.69145 4.70639 4.72321 4.74603 4.76833 4.87716 4.89744 4.96709 4.98551 4.99134 5.00990 5.04153 5.06275 5.10913 5.13062 5.16365 5.19341 5.30418 5.35533 5.37464 5.45059 5.56689 5.67454 5.72444 5.95615 6.05262 6.15523 6.24068 6.29006 6.42334 6.56488 6.73156 7.32419 8.86689 Molecular weight = 309.25amu Principal moments of inertia in cm(-1) A = 0.015416 B = 0.003788 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.857710 B = 7390.959011 C = 8122.472687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.562 5.562 3 C 0.025 3.975 4 C 0.030 3.970 5 C 0.065 3.935 6 N -0.548 5.548 7 C 0.061 3.939 8 C -0.116 4.116 9 C -0.092 4.092 10 C -0.047 4.047 11 C -0.106 4.106 12 C -0.104 4.104 13 C 0.059 3.941 14 N -0.522 5.522 15 C 0.162 3.838 16 C -0.544 4.544 17 H 0.030 0.970 18 C 0.009 3.991 19 N -0.950 5.950 20 Si 0.950 3.050 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.245 1.245 24 C 0.099 3.901 25 C 0.076 3.924 26 H 0.028 0.972 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.028 0.972 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.000 1.000 47 H 0.061 0.939 48 H 0.028 0.972 49 H 0.024 0.976 50 H 0.265 0.735 51 H 0.062 0.938 52 H -0.011 1.011 53 H 0.052 0.948 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.219 22.537 6.550 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.286 5.286 3 C -0.123 4.123 4 C -0.100 4.100 5 C -0.063 4.063 6 N -0.271 5.271 7 C -0.066 4.066 8 C -0.153 4.153 9 C -0.130 4.130 10 C -0.048 4.048 11 C -0.144 4.144 12 C -0.142 4.142 13 C -0.070 4.070 14 N -0.244 5.244 15 C 0.034 3.966 16 C -0.583 4.583 17 H 0.048 0.952 18 C -0.189 4.189 19 N -0.590 5.590 20 Si 0.773 3.227 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.168 1.168 24 C -0.029 4.029 25 C -0.052 4.052 26 H 0.047 0.953 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.018 0.982 47 H 0.080 0.920 48 H 0.046 0.954 49 H 0.042 0.958 50 H 0.074 0.926 51 H 0.081 0.919 52 H 0.007 0.993 53 H 0.071 0.929 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.365 21.816 6.384 23.605 hybrid contribution 0.137 -0.337 -0.508 0.624 sum -6.228 21.479 5.877 23.123 Atomic orbital electron populations 1.22468 0.86555 1.02644 1.00965 1.61961 1.08976 1.14675 1.43011 1.22412 1.00841 0.88052 1.01005 1.22731 1.00277 0.95215 0.91765 1.22125 1.00530 0.89989 0.93654 1.62074 1.04603 1.55931 1.04518 1.22095 0.98484 0.97056 0.88974 1.21586 0.96275 0.99716 0.97768 1.21463 0.94610 1.00901 0.95981 1.20582 0.95056 0.93244 0.95912 1.21581 0.94169 1.00145 0.98542 1.21569 1.00626 0.92453 0.99523 1.21958 0.88674 0.98005 0.98320 1.62405 1.10605 1.06708 1.44711 1.19997 0.95591 0.87455 0.93538 1.21912 1.35007 0.98181 1.03217 0.95216 1.25941 0.96513 1.00228 0.96213 1.70096 1.48350 1.19571 1.21030 0.85671 0.79060 0.77499 0.80464 1.19304 1.20987 1.16827 1.21659 0.98896 0.91566 0.90782 1.21984 0.87651 0.97526 0.98045 0.95307 0.90447 0.91261 0.91445 0.90354 0.95362 0.94361 0.91117 0.90300 0.91698 0.93939 0.90723 0.90124 0.93155 0.91357 0.91096 0.94091 0.89560 0.90572 0.89949 0.98178 0.92040 0.95372 0.95826 0.92640 0.91913 0.99264 0.92896 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.32 127.69 1.19 1.53 16 2 N -0.56 -10.51 5.02 -948.82 -4.76 -15.28 16 3 C 0.03 0.37 9.57 127.69 1.22 1.59 16 4 C 0.03 0.58 4.26 86.30 0.37 0.95 16 5 C 0.07 1.52 5.28 86.30 0.46 1.98 16 6 N -0.55 -14.51 4.16 -896.48 -3.73 -18.24 16 7 C 0.06 1.36 5.05 86.33 0.44 1.79 16 8 C -0.12 -2.81 5.74 30.65 0.18 -2.64 16 9 C -0.09 -2.30 4.30 30.66 0.13 -2.17 16 10 C -0.05 -1.39 0.51 -52.16 -0.03 -1.42 16 11 C -0.11 -2.92 4.79 30.66 0.15 -2.77 16 12 C -0.10 -2.96 5.74 30.65 0.18 -2.78 16 13 C 0.06 2.30 5.13 86.33 0.44 2.75 16 14 N -0.52 -21.87 4.10 -900.98 -3.70 -25.56 16 15 C 0.16 7.99 4.20 85.56 0.36 8.35 16 16 C -0.54 -32.12 8.29 25.60 0.21 -31.90 16 17 H 0.03 1.98 6.08 -2.91 -0.02 1.96 16 18 C 0.01 0.51 5.47 84.65 0.46 0.97 16 19 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 20 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 23 H -0.24 -10.84 6.54 99.48 0.65 -10.19 16 24 C 0.10 4.02 3.30 86.31 0.28 4.31 16 25 C 0.08 2.06 3.56 86.30 0.31 2.36 16 26 H 0.03 0.41 8.14 -2.38 -0.02 0.39 16 27 H 0.08 1.03 8.12 -2.38 -0.02 1.01 16 28 H 0.07 1.12 6.47 -2.39 -0.02 1.10 16 29 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 30 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 31 H 0.03 0.38 8.14 -2.39 -0.02 0.37 16 32 H 0.04 0.71 6.66 -2.39 -0.02 0.70 16 33 H 0.07 1.45 6.43 -2.39 -0.02 1.43 16 34 H 0.08 1.73 6.47 -2.39 -0.02 1.71 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.04 0.82 6.75 -2.39 -0.02 0.80 16 37 H 0.07 1.55 8.06 -2.39 -0.02 1.53 16 38 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.05 1.54 6.57 -2.39 -0.02 1.52 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.95 6.08 -2.39 -0.01 1.93 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 2.11 6.64 -2.38 -0.02 2.09 16 46 H 0.00 -0.01 7.03 -2.39 -0.02 -0.02 16 47 H 0.06 2.35 8.06 -2.39 -0.02 2.33 16 48 H 0.03 1.38 7.12 -2.39 -0.02 1.36 16 49 H 0.02 1.17 7.57 -2.39 -0.02 1.15 16 50 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 51 H 0.06 2.71 5.99 -2.39 -0.01 2.70 16 52 H -0.01 -0.55 6.57 -2.39 -0.02 -0.57 16 53 H 0.05 1.63 8.12 -2.39 -0.02 1.61 16 54 H 0.05 1.18 6.60 -2.38 -0.02 1.16 16 Total: -1.00 -68.28 381.08 -2.88 -71.16 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.78 Total: 18.51 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 6.35 Total: -17.09 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -11.89 Total: -119.81 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -68.28 -2.88 -71.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939181.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.173 kcal (2) G-P(sol) polarization free energy of solvation -68.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds