Wall clock time and date at job start Fri Apr 10 2020 22:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99873 * 2 1 4 4 C 1.46900 * 110.99920 * 123.95093 * 2 1 3 5 5 C 1.53000 * 109.46981 * 169.99985 * 4 2 1 6 6 N 1.46900 * 109.46981 * 180.02562 * 5 4 2 7 7 C 1.46823 * 110.99408 * 294.20463 * 6 5 4 8 8 C 1.53041 * 109.56213 * 174.17192 * 7 6 5 9 9 C 1.53134 * 109.26524 * 59.17201 * 8 7 6 10 10 C 1.53061 * 109.13765 * 302.40192 * 9 8 7 11 11 C 1.53071 * 109.45064 * 297.69640 * 10 9 8 12 12 C 1.53135 * 109.15043 * 182.35662 * 11 10 9 13 13 C 1.53035 * 109.25656 * 57.60808 * 12 11 10 14 14 N 1.46843 * 109.54962 * 300.79145 * 13 12 11 15 15 C 1.46896 * 111.00657 * 185.84900 * 14 13 12 16 16 C 1.50702 * 109.46641 * 293.95353 * 15 14 13 17 17 H 1.07991 * 120.00310 * 359.97438 * 16 15 14 18 18 C 1.37886 * 119.99326 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00485 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99635 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47126 * 89.99716 * 20 18 16 22 22 H 1.48492 * 109.47228 * 209.99768 * 20 18 16 23 23 H 1.48505 * 109.47065 * 330.00023 * 20 18 16 24 24 C 1.46863 * 111.19852 * 61.74332 * 14 13 12 25 25 C 1.46864 * 110.99988 * 169.99978 * 6 5 4 26 26 H 1.09002 * 109.46876 * 296.05016 * 1 2 3 27 27 H 1.08995 * 109.47046 * 56.04927 * 1 2 3 28 28 H 1.08996 * 109.46889 * 176.04850 * 1 2 3 29 29 H 1.09001 * 109.46850 * 183.95576 * 3 2 1 30 30 H 1.09004 * 109.46946 * 303.95369 * 3 2 1 31 31 H 1.08994 * 109.47401 * 63.95392 * 3 2 1 32 32 H 1.08998 * 109.46774 * 50.00082 * 4 2 1 33 33 H 1.08995 * 109.47115 * 290.00247 * 4 2 1 34 34 H 1.08999 * 109.46821 * 60.00168 * 5 4 2 35 35 H 1.08997 * 109.47096 * 299.99662 * 5 4 2 36 36 H 1.08999 * 109.45902 * 54.14491 * 7 6 5 37 37 H 1.09003 * 109.45683 * 294.19835 * 7 6 5 38 38 H 1.08997 * 109.50448 * 299.23031 * 8 7 6 39 39 H 1.09002 * 109.53851 * 179.13076 * 8 7 6 40 40 H 1.09001 * 109.52320 * 182.50655 * 9 8 7 41 41 H 1.08997 * 109.53094 * 62.30240 * 9 8 7 42 42 H 1.08998 * 109.52772 * 302.26242 * 11 10 9 43 43 H 1.08999 * 109.52677 * 62.46247 * 11 10 9 44 44 H 1.08996 * 109.50501 * 177.54292 * 12 11 10 45 45 H 1.08998 * 109.50688 * 297.67192 * 12 11 10 46 46 H 1.09001 * 109.46486 * 60.81372 * 13 12 11 47 47 H 1.09005 * 109.46038 * 180.78797 * 13 12 11 48 48 H 1.09000 * 109.47155 * 53.95400 * 15 14 13 49 49 H 1.09004 * 109.47282 * 173.95495 * 15 14 13 50 50 H 0.97002 * 120.00237 * 180.02562 * 19 18 16 51 51 H 1.09007 * 109.46467 * 178.33602 * 24 14 13 52 52 H 1.09004 * 109.46375 * 58.37909 * 24 14 13 53 53 H 1.09002 * 109.46641 * 65.76157 * 25 6 5 54 54 H 1.08998 * 109.46498 * 305.77470 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5045 -0.9553 0.9704 6 7 4.0308 -1.7217 2.1077 7 6 3.9052 -0.9616 3.3575 8 6 4.3265 -1.8412 4.5369 9 6 5.7755 -2.2945 4.3368 10 6 5.8885 -3.0409 3.0053 11 6 5.0093 -4.2933 3.0468 12 6 5.1728 -5.0656 1.7346 13 6 6.6490 -5.4172 1.5366 14 7 7.4473 -4.1852 1.5023 15 6 8.8497 -4.4754 1.1754 16 6 9.4708 -5.2741 2.2923 17 1 8.8827 -5.5392 3.1584 18 6 10.7900 -5.6664 2.2082 19 7 11.5060 -5.3440 1.1533 20 14 11.5598 -6.6570 3.5923 21 1 11.3707 -8.1061 3.3284 22 1 13.0112 -6.3534 3.6704 23 1 10.9092 -6.2991 4.8784 24 6 7.3434 -3.4497 2.7692 25 6 5.4222 -2.1273 1.8703 26 1 -0.3633 0.4513 0.9233 27 1 -0.3633 0.5739 -0.8524 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0828 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8525 31 1 1.7044 1.8723 0.9232 32 1 1.5090 -1.7406 1.1756 33 1 1.7975 -0.2247 2.0628 34 1 3.9909 0.0194 0.9323 35 1 3.7024 -1.4966 0.0452 36 1 2.8695 -0.6487 3.4898 37 1 4.5472 -0.0817 3.3134 38 1 3.6761 -2.7142 4.5903 39 1 4.2479 -1.2717 5.4629 40 1 6.0656 -2.9575 5.1519 41 1 6.4311 -1.4239 4.3232 42 1 5.3136 -4.9247 3.8815 43 1 3.9662 -4.0021 3.1704 44 1 4.5828 -5.9811 1.7752 45 1 4.8311 -4.4482 0.9039 46 1 6.9864 -6.0456 2.3608 47 1 6.7712 -5.9550 0.5963 48 1 8.8958 -5.0487 0.2495 49 1 9.3949 -3.5398 1.0510 50 1 12.4339 -5.6203 1.0940 51 1 7.9685 -2.5578 2.7237 52 1 7.6791 -4.0867 3.5876 53 1 6.0572 -1.2421 1.8324 54 1 5.4880 -2.6623 0.9229 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277939185.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:21:45 Heat of formation + Delta-G solvation = -14.233364 kcal Electronic energy + Delta-G solvation = -27752.325727 eV Core-core repulsion = 24336.517831 eV Total energy + Delta-G solvation = -3415.807896 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.248 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.34278 -39.07281 -37.88599 -35.52332 -34.44853 -33.17088 -31.92948 -30.11815 -28.70697 -28.46042 -27.05129 -25.77855 -25.67814 -23.75934 -23.24931 -22.98270 -21.49852 -20.87147 -19.21765 -18.33943 -17.38259 -16.86832 -16.54523 -16.33714 -15.93234 -15.66682 -15.61161 -15.38695 -15.21036 -14.98159 -14.84244 -14.69902 -14.28324 -13.96803 -13.61144 -13.49714 -13.31203 -13.22764 -13.03404 -12.89971 -12.77882 -12.67539 -12.55778 -12.50142 -12.28730 -12.14410 -12.12189 -11.89913 -11.85445 -11.72875 -11.62623 -11.39714 -11.01138 -10.85884 -10.72313 -10.61330 -9.32263 -9.12256 -8.96385 -8.15312 -6.36274 1.34680 1.34825 1.45618 2.35498 2.72022 3.07954 3.36667 3.36924 3.84077 3.91617 3.93347 4.07645 4.11042 4.24384 4.29964 4.32826 4.42417 4.48462 4.50024 4.51598 4.61423 4.64020 4.68088 4.72135 4.74195 4.78230 4.81562 4.93237 4.97027 5.00298 5.02345 5.05273 5.06485 5.08511 5.10169 5.13181 5.14292 5.19887 5.25959 5.30048 5.35201 5.42253 5.43655 5.62880 5.67567 5.74494 6.05622 6.06270 6.10543 6.21904 6.29011 6.31232 6.60974 6.86121 7.35358 8.86004 Molecular weight = 309.25amu Principal moments of inertia in cm(-1) A = 0.023665 B = 0.003097 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.910592 B = 9039.800976 C = 9387.102689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.565 5.565 3 C 0.022 3.978 4 C 0.070 3.930 5 C 0.065 3.935 6 N -0.532 5.532 7 C 0.054 3.946 8 C -0.107 4.107 9 C -0.111 4.111 10 C -0.043 4.043 11 C -0.089 4.089 12 C -0.104 4.104 13 C 0.064 3.936 14 N -0.536 5.536 15 C 0.201 3.799 16 C -0.554 4.554 17 H 0.055 0.945 18 C 0.010 3.990 19 N -0.927 5.927 20 Si 0.957 3.043 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.268 1.268 24 C 0.083 3.917 25 C 0.091 3.909 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.023 0.977 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.013 0.987 47 H 0.050 0.950 48 H 0.003 0.997 49 H 0.000 1.000 50 H 0.265 0.735 51 H 0.042 0.958 52 H 0.017 0.983 53 H 0.011 0.989 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.742 10.977 3.941 25.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.289 5.289 3 C -0.126 4.126 4 C -0.058 4.058 5 C -0.063 4.063 6 N -0.256 5.256 7 C -0.074 4.074 8 C -0.144 4.144 9 C -0.149 4.149 10 C -0.043 4.043 11 C -0.127 4.127 12 C -0.141 4.141 13 C -0.064 4.064 14 N -0.259 5.259 15 C 0.074 3.926 16 C -0.593 4.593 17 H 0.073 0.927 18 C -0.189 4.189 19 N -0.567 5.567 20 Si 0.782 3.218 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.193 1.193 24 C -0.046 4.046 25 C -0.037 4.037 26 H 0.047 0.953 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.041 0.959 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.031 0.969 47 H 0.069 0.931 48 H 0.021 0.979 49 H 0.019 0.981 50 H 0.074 0.926 51 H 0.061 0.939 52 H 0.036 0.964 53 H 0.029 0.971 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.894 10.619 3.089 25.425 hybrid contribution 2.033 0.023 1.508 2.532 sum -20.860 10.642 4.597 23.865 Atomic orbital electron populations 1.22390 0.85978 1.02765 1.00943 1.61877 1.09068 1.14408 1.43573 1.22442 1.00752 0.88486 1.00913 1.21989 0.94267 0.98535 0.91011 1.21965 0.94801 0.95768 0.93754 1.61842 1.19351 1.41810 1.02611 1.22186 1.01194 0.94345 0.89634 1.21559 0.95136 1.00276 0.97437 1.21609 0.97932 0.99330 0.96020 1.20517 0.92959 0.95853 0.95020 1.21458 1.00461 0.94403 0.96345 1.21553 0.93554 1.00291 0.98739 1.21923 0.94250 0.91143 0.99123 1.62345 1.10646 1.21514 1.31362 1.19373 0.84499 0.94071 0.94622 1.21980 0.96858 1.34923 1.05574 0.92669 1.25833 0.97846 0.97049 0.98157 1.70065 1.09118 1.47263 1.30254 0.85577 0.77649 0.79043 0.79575 1.19848 1.20546 1.19252 1.21829 0.95828 0.96384 0.90592 1.21791 0.86856 0.96207 0.98845 0.95277 0.90588 0.91020 0.91894 0.90551 0.95345 0.90140 0.94314 0.95462 0.91312 0.89444 0.95889 0.90505 0.90035 0.92026 0.92952 0.93747 0.89154 0.90753 0.91307 0.96864 0.93125 0.97930 0.98147 0.92610 0.93903 0.96435 0.97086 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.57 127.69 1.22 1.58 16 2 N -0.56 -9.76 5.02 -948.86 -4.76 -14.52 16 3 C 0.02 0.34 9.32 127.69 1.19 1.53 16 4 C 0.07 1.24 4.89 86.30 0.42 1.66 16 5 C 0.07 1.40 4.88 86.30 0.42 1.82 16 6 N -0.53 -12.17 3.90 -896.48 -3.49 -15.66 16 7 C 0.05 1.06 5.29 86.33 0.46 1.51 16 8 C -0.11 -2.05 5.74 30.65 0.18 -1.87 16 9 C -0.11 -2.81 4.79 30.66 0.15 -2.66 16 10 C -0.04 -1.28 0.51 -52.16 -0.03 -1.31 16 11 C -0.09 -2.51 4.30 30.66 0.13 -2.37 16 12 C -0.10 -3.16 5.74 30.65 0.18 -2.98 16 13 C 0.06 2.56 5.13 86.33 0.44 3.00 16 14 N -0.54 -23.69 4.17 -901.04 -3.75 -27.44 16 15 C 0.20 10.97 5.13 85.56 0.44 11.41 16 16 C -0.55 -31.54 7.74 25.60 0.20 -31.35 16 17 H 0.06 3.11 5.84 -2.92 -0.02 3.09 16 18 C 0.01 0.60 5.46 84.66 0.46 1.06 16 19 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 20 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 24 C 0.08 3.32 3.74 86.30 0.32 3.64 16 25 C 0.09 2.64 3.75 86.31 0.32 2.96 16 26 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.08 0.85 8.12 -2.39 -0.02 0.84 16 28 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 29 H 0.06 1.04 6.47 -2.39 -0.02 1.03 16 30 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 31 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 1.47 8.06 -2.39 -0.02 1.46 16 33 H 0.04 0.64 6.41 -2.39 -0.02 0.62 16 34 H 0.03 0.60 6.53 -2.39 -0.02 0.59 16 35 H 0.07 1.68 7.99 -2.39 -0.02 1.66 16 36 H 0.09 1.42 6.21 -2.39 -0.01 1.40 16 37 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.08 1.45 6.64 -2.39 -0.02 1.43 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 2.23 6.07 -2.39 -0.01 2.21 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.07 2.10 6.57 -2.39 -0.02 2.09 16 46 H 0.01 0.57 7.03 -2.39 -0.02 0.56 16 47 H 0.05 2.09 8.06 -2.38 -0.02 2.07 16 48 H 0.00 0.15 8.06 -2.39 -0.02 0.13 16 49 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 50 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 51 H 0.04 1.83 8.12 -2.38 -0.02 1.81 16 52 H 0.02 0.78 6.57 -2.38 -0.02 0.76 16 53 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 54 H 0.07 2.45 5.88 -2.39 -0.01 2.43 16 Total: -1.00 -62.86 387.82 -2.36 -65.22 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.83 Total: 14.12 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 6.50 Total: -12.38 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -11.72 Total: -113.72 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -62.86 -2.36 -65.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939185.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.989 kcal (2) G-P(sol) polarization free energy of solvation -62.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds