Wall clock time and date at job start Fri Apr 10 2020 22:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 111.00176 * 2 1 4 4 C 1.46904 * 110.99404 * 123.94834 * 2 1 3 5 5 C 1.53003 * 109.47112 * 66.05017 * 4 2 1 6 6 N 1.46899 * 109.47292 * 179.97438 * 5 4 2 7 7 C 1.46850 * 110.99684 * 66.04205 * 6 5 4 8 8 C 1.53042 * 109.53920 * 185.85414 * 7 6 5 9 9 C 1.53129 * 109.26065 * 300.78519 * 8 7 6 10 10 C 1.53050 * 109.15608 * 57.58667 * 9 8 7 11 11 C 1.53061 * 109.48377 * 62.52359 * 10 9 8 12 12 C 1.53048 * 109.25831 * 62.31070 * 11 10 9 13 13 N 1.46843 * 109.51871 * 59.09241 * 12 11 10 14 14 C 1.46898 * 111.00177 * 174.12992 * 13 12 11 15 15 C 1.50702 * 109.46987 * 64.90092 * 14 13 12 16 16 H 1.07997 * 119.99889 * 355.00143 * 15 14 13 17 17 C 1.37881 * 119.99743 * 174.99155 * 15 14 13 18 18 N 1.31507 * 120.00071 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99799 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47337 * 90.00352 * 19 17 15 21 21 H 1.48501 * 109.47119 * 210.00392 * 19 17 15 22 22 H 1.48501 * 109.47170 * 330.00461 * 19 17 15 23 23 C 1.46837 * 111.24435 * 298.26363 * 13 12 11 24 24 C 1.53045 * 109.48991 * 182.30791 * 10 9 8 25 25 C 1.46860 * 111.00185 * 190.25546 * 6 5 4 26 26 H 1.08994 * 109.47262 * 296.05255 * 1 2 3 27 27 H 1.09003 * 109.46628 * 56.04770 * 1 2 3 28 28 H 1.09000 * 109.47440 * 176.04445 * 1 2 3 29 29 H 1.08996 * 109.46784 * 183.95367 * 3 2 1 30 30 H 1.08997 * 109.46794 * 303.95045 * 3 2 1 31 31 H 1.08998 * 109.47159 * 63.94648 * 3 2 1 32 32 H 1.08994 * 109.47590 * 306.04558 * 4 2 1 33 33 H 1.09000 * 109.46919 * 186.04449 * 4 2 1 34 34 H 1.09004 * 109.47234 * 59.99244 * 5 4 2 35 35 H 1.09000 * 109.46765 * 299.99526 * 5 4 2 36 36 H 1.09001 * 109.45384 * 65.83907 * 7 6 5 37 37 H 1.08993 * 109.44779 * 305.87215 * 7 6 5 38 38 H 1.09003 * 109.50109 * 180.84600 * 8 7 6 39 39 H 1.09005 * 109.50804 * 60.72752 * 8 7 6 40 40 H 1.08992 * 109.52583 * 297.67776 * 9 8 7 41 41 H 1.09008 * 109.57483 * 177.52168 * 9 8 7 42 42 H 1.08999 * 109.50276 * 302.37578 * 11 10 9 43 43 H 1.08993 * 109.53799 * 182.26832 * 11 10 9 44 44 H 1.09004 * 109.46354 * 299.08015 * 12 11 10 45 45 H 1.08999 * 109.46033 * 179.10450 * 12 11 10 46 46 H 1.09004 * 109.47152 * 304.90414 * 14 13 12 47 47 H 1.08999 * 109.46746 * 184.90092 * 14 13 12 48 48 H 0.97003 * 120.00061 * 179.97438 * 18 17 15 49 49 H 1.09000 * 109.46281 * 181.74151 * 23 13 12 50 50 H 1.08997 * 109.46569 * 301.71737 * 23 13 12 51 51 H 1.09007 * 109.50220 * 57.62592 * 24 10 9 52 52 H 1.09000 * 109.50673 * 177.70985 * 24 10 9 53 53 H 1.09005 * 109.45973 * 54.25637 * 25 6 5 54 54 H 1.09002 * 109.45857 * 294.29568 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2426 0.9705 6 7 2.1582 -3.0086 2.1079 7 6 1.4892 -2.6231 3.3570 8 6 2.1600 -3.3310 4.5365 9 6 2.0689 -4.8462 4.3343 10 6 2.7280 -5.2157 3.0033 11 6 4.2123 -4.8446 3.0483 12 6 4.9019 -5.6542 4.1488 13 7 4.7435 -7.0883 3.8754 14 6 5.5103 -7.8949 4.8343 15 6 4.9434 -7.7042 6.2175 16 1 4.1513 -6.9889 6.3826 17 6 5.4360 -8.4431 7.2723 18 7 6.4008 -9.3139 7.0713 19 14 4.7329 -8.2073 8.9867 20 1 3.5953 -9.1404 9.1879 21 1 5.7859 -8.4856 9.9962 22 1 4.2585 -6.8084 9.1391 23 6 3.3274 -7.4766 3.8749 24 6 2.5906 -6.7214 2.7661 25 6 2.0437 -4.4530 1.8680 26 1 -0.3633 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0828 1.3431 -0.0709 30 1 1.5899 1.9162 -0.8525 31 1 1.7044 1.8724 0.9232 32 1 1.5610 -0.3871 2.0629 33 1 3.0796 -0.6611 1.1758 34 1 2.0657 -2.6214 0.0453 35 1 0.5471 -2.3474 0.9325 36 1 0.4390 -2.9111 3.3103 37 1 1.5643 -1.5440 3.4908 38 1 1.6534 -3.0561 5.4617 39 1 3.2071 -3.0334 4.5920 40 1 1.0221 -5.1494 4.3190 41 1 2.5836 -5.3550 5.1494 42 1 4.3151 -3.7804 3.2606 43 1 4.6737 -5.0702 2.0870 44 1 4.4505 -5.4161 5.1120 45 1 5.9626 -5.4042 4.1732 46 1 6.5535 -7.5791 4.8224 47 1 5.4459 -8.9471 4.5571 48 1 6.7475 -9.8335 7.8134 49 1 3.2451 -8.5493 3.7003 50 1 2.8830 -7.2305 4.8392 51 1 1.5359 -6.9967 2.7771 52 1 3.0239 -6.9786 1.7996 53 1 2.5233 -4.7030 0.9216 54 1 0.9907 -4.7317 1.8261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277939492.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:21:58 Heat of formation + Delta-G solvation = -14.208477 kcal Electronic energy + Delta-G solvation = -27568.575789 eV Core-core repulsion = 24152.768972 eV Total energy + Delta-G solvation = -3415.806817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.248 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.41048 -39.15684 -37.92428 -35.62038 -34.25614 -33.02755 -31.57562 -30.43818 -29.20338 -28.46419 -27.21790 -26.03189 -24.53211 -24.01071 -23.62879 -22.84241 -21.66258 -20.94177 -19.14881 -18.20414 -17.30126 -16.97420 -16.56124 -16.39935 -15.88709 -15.70469 -15.66842 -15.45068 -15.28495 -14.97706 -14.95913 -14.76000 -14.21147 -14.02864 -13.57534 -13.37712 -13.33843 -13.23013 -13.01722 -12.88198 -12.78875 -12.69270 -12.57772 -12.44119 -12.25659 -12.14171 -12.08261 -11.96613 -11.88228 -11.77825 -11.69546 -11.43146 -10.93921 -10.93401 -10.75795 -10.60522 -9.34638 -9.12822 -8.91006 -8.13560 -6.34669 1.34900 1.35307 1.45955 2.36160 2.69404 3.09149 3.33998 3.44162 3.79984 3.83589 3.89773 4.04772 4.10718 4.22447 4.28853 4.30961 4.39127 4.48903 4.52145 4.55022 4.60055 4.63485 4.67282 4.68371 4.70514 4.75142 4.77997 4.86471 4.92100 4.95847 4.98697 5.00152 5.03630 5.06283 5.10223 5.12082 5.16725 5.21039 5.29582 5.33268 5.34798 5.37301 5.43080 5.59585 5.65808 5.75582 6.03344 6.07508 6.08583 6.21064 6.26326 6.32491 6.65651 6.87844 7.36704 8.87387 Molecular weight = 309.25amu Principal moments of inertia in cm(-1) A = 0.026556 B = 0.002898 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.135145 B = 9658.626521 C = 9954.067254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.561 5.561 3 C 0.026 3.974 4 C 0.064 3.936 5 C 0.068 3.932 6 N -0.541 5.541 7 C 0.063 3.937 8 C -0.114 4.114 9 C -0.113 4.113 10 C -0.045 4.045 11 C -0.079 4.079 12 C 0.065 3.935 13 N -0.541 5.541 14 C 0.199 3.801 15 C -0.551 4.551 16 H 0.056 0.944 17 C 0.009 3.991 18 N -0.928 5.928 19 Si 0.956 3.044 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.267 1.267 23 C 0.068 3.932 24 C -0.096 4.096 25 C 0.081 3.919 26 H 0.025 0.975 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.026 0.974 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.033 0.967 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.044 0.956 46 H -0.001 1.001 47 H 0.004 0.996 48 H 0.265 0.735 49 H 0.047 0.953 50 H 0.022 0.978 51 H 0.075 0.925 52 H 0.070 0.930 53 H 0.078 0.922 54 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.239 19.339 -12.984 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.285 5.285 3 C -0.122 4.122 4 C -0.064 4.064 5 C -0.060 4.060 6 N -0.266 5.266 7 C -0.065 4.065 8 C -0.152 4.152 9 C -0.150 4.150 10 C -0.045 4.045 11 C -0.117 4.117 12 C -0.063 4.063 13 N -0.265 5.265 14 C 0.073 3.927 15 C -0.590 4.590 16 H 0.074 0.926 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.781 3.219 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.192 1.192 23 C -0.060 4.060 24 C -0.134 4.134 25 C -0.047 4.047 26 H 0.043 0.957 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.017 0.983 47 H 0.022 0.978 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.041 0.959 51 H 0.093 0.907 52 H 0.088 0.912 53 H 0.097 0.903 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.288 19.021 -13.768 26.980 hybrid contribution -1.153 -0.222 2.762 3.001 sum -14.441 18.799 -11.007 26.136 Atomic orbital electron populations 1.22466 0.86852 1.02529 1.00819 1.61913 1.08670 1.14681 1.43261 1.22396 1.01014 0.87936 1.00890 1.22030 1.00525 0.92841 0.90974 1.21966 0.97390 0.93059 0.93602 1.61750 1.57358 1.04859 1.02621 1.22072 0.95168 1.00002 0.89217 1.21581 1.01504 0.94413 0.97679 1.21672 0.99880 0.96502 0.96985 1.20448 0.95320 0.93966 0.94775 1.21425 0.93745 0.98921 0.97565 1.21934 0.98913 0.88268 0.97226 1.62360 1.09946 1.04277 1.49946 1.19391 0.92396 0.92197 0.88764 1.21958 1.19924 1.22054 0.95037 0.92582 1.25836 0.95222 0.94740 1.03176 1.70070 1.28017 1.25521 1.33137 0.85586 0.78204 0.78718 0.79391 1.19867 1.20626 1.19193 1.21837 0.88445 0.98359 0.97381 1.21585 0.99572 0.93931 0.98353 1.21953 0.98305 0.86494 0.97912 0.95676 0.90511 0.91259 0.91190 0.90390 0.95574 0.94792 0.90623 0.90377 0.94653 0.94905 0.90082 0.91177 0.91812 0.92043 0.93846 0.90276 0.92256 0.96200 0.93693 0.98335 0.97821 0.92653 0.93415 0.95944 0.90685 0.91176 0.90320 0.94473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.32 127.69 1.19 1.46 16 2 N -0.56 -8.58 5.02 -948.85 -4.76 -13.34 16 3 C 0.03 0.32 9.57 127.69 1.22 1.54 16 4 C 0.06 1.05 4.89 86.30 0.42 1.47 16 5 C 0.07 1.17 4.88 86.30 0.42 1.59 16 6 N -0.54 -10.88 4.00 -896.49 -3.58 -14.47 16 7 C 0.06 1.22 5.29 86.33 0.46 1.68 16 8 C -0.11 -2.65 5.75 30.65 0.18 -2.48 16 9 C -0.11 -3.10 4.19 30.65 0.13 -2.97 16 10 C -0.04 -1.20 0.51 -52.15 -0.03 -1.22 16 11 C -0.08 -2.43 4.47 30.63 0.14 -2.29 16 12 C 0.06 2.60 4.87 86.33 0.42 3.02 16 13 N -0.54 -24.18 4.85 -900.90 -4.37 -28.55 16 14 C 0.20 10.92 5.12 85.56 0.44 11.36 16 15 C -0.55 -31.19 7.72 25.60 0.20 -30.99 16 16 H 0.06 3.12 5.86 -2.91 -0.02 3.11 16 17 C 0.01 0.54 5.46 84.66 0.46 1.00 16 18 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 19 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 C 0.07 2.71 4.78 86.33 0.41 3.12 16 24 C -0.10 -2.84 4.89 30.63 0.15 -2.69 16 25 C 0.08 1.76 4.19 86.29 0.36 2.12 16 26 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 28 H 0.07 0.87 6.47 -2.39 -0.02 0.85 16 29 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 30 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 31 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.03 0.55 6.42 -2.39 -0.02 0.54 16 33 H 0.08 1.37 8.06 -2.39 -0.02 1.35 16 34 H 0.08 1.43 7.98 -2.38 -0.02 1.41 16 35 H 0.04 0.58 6.53 -2.39 -0.02 0.57 16 36 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 1.41 6.22 -2.39 -0.01 1.39 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 1.64 6.54 -2.38 -0.02 1.62 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.04 1.50 4.93 -2.38 -0.01 1.48 16 42 H 0.08 2.31 5.99 -2.39 -0.01 2.29 16 43 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.02 0.86 5.18 -2.39 -0.01 0.85 16 45 H 0.04 1.89 8.08 -2.39 -0.02 1.87 16 46 H 0.00 -0.09 8.08 -2.38 -0.02 -0.11 16 47 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 48 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 49 H 0.05 1.98 8.12 -2.39 -0.02 1.96 16 50 H 0.02 0.97 5.16 -2.39 -0.01 0.95 16 51 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 52 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 53 H 0.08 1.67 8.01 -2.38 -0.02 1.65 16 54 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -62.84 385.65 -3.00 -65.83 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.84 Total: 14.30 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 6.57 Total: -14.29 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -12.43 Total: -112.45 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -62.84 -3.00 -65.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939492.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.625 kcal (2) G-P(sol) polarization free energy of solvation -62.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds