Wall clock time and date at job start Fri Apr 10 2020 22:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46893 * 111.00501 * 2 1 4 4 C 1.46900 * 111.00091 * 123.95909 * 2 1 3 5 5 C 1.53001 * 109.47060 * 169.99504 * 4 2 1 6 6 N 1.46902 * 109.46830 * 183.74280 * 5 4 2 7 7 C 1.47962 * 110.99716 * 175.81217 * 6 5 4 8 8 C 1.54152 * 107.03841 * 214.29414 * 7 6 5 9 9 C 1.53916 * 104.96425 * 1.64790 * 8 7 6 10 10 C 1.48663 * 111.00214 * 58.29055 * 6 5 4 11 11 C 1.52308 * 110.57371 * 262.92989 * 9 8 7 12 12 C 1.53192 * 109.34600 * 292.75786 * 11 9 8 13 13 N 1.46849 * 109.43433 * 302.05584 * 12 11 9 14 14 C 1.46892 * 111.00281 * 186.49650 * 13 12 11 15 15 C 1.53004 * 109.46982 * 45.62255 * 14 13 12 16 16 C 1.50707 * 109.47002 * 180.02562 * 15 14 13 17 17 H 1.07991 * 119.99985 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99823 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99937 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00153 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46701 * 59.99895 * 20 18 16 22 22 H 1.48501 * 109.47223 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47120 * 299.99964 * 20 18 16 24 24 C 1.46860 * 111.32693 * 62.30240 * 13 12 11 25 25 C 1.52310 * 110.56783 * 139.65224 * 9 8 7 26 26 H 1.09005 * 109.46554 * 296.04649 * 1 2 3 27 27 H 1.08996 * 109.47324 * 56.03638 * 1 2 3 28 28 H 1.08998 * 109.47345 * 176.04850 * 1 2 3 29 29 H 1.08999 * 109.47557 * 183.95871 * 3 2 1 30 30 H 1.08997 * 109.47073 * 303.95991 * 3 2 1 31 31 H 1.09004 * 109.46826 * 63.95826 * 3 2 1 32 32 H 1.09006 * 109.47358 * 49.99919 * 4 2 1 33 33 H 1.08999 * 109.47097 * 289.99826 * 4 2 1 34 34 H 1.09000 * 109.47006 * 63.74745 * 5 4 2 35 35 H 1.09001 * 109.46976 * 303.74088 * 5 4 2 36 36 H 1.09004 * 109.92044 * 333.63852 * 7 6 5 37 37 H 1.09001 * 109.91798 * 94.74893 * 7 6 5 38 38 H 1.09002 * 110.33886 * 120.51867 * 8 7 6 39 39 H 1.08992 * 110.34219 * 242.77311 * 8 7 6 40 40 H 1.08998 * 110.67346 * 277.44031 * 10 6 5 41 41 H 1.09007 * 110.67149 * 40.58618 * 10 6 5 42 42 H 1.08993 * 109.48902 * 52.72025 * 11 9 8 43 43 H 1.08998 * 109.48879 * 172.79870 * 11 9 8 44 44 H 1.09004 * 109.47003 * 182.07268 * 12 11 9 45 45 H 1.08996 * 109.47477 * 62.05182 * 12 11 9 46 46 H 1.08997 * 109.47446 * 165.62070 * 14 13 12 47 47 H 1.08998 * 109.47404 * 285.61896 * 14 13 12 48 48 H 1.09007 * 109.46702 * 299.99668 * 15 14 13 49 49 H 1.08998 * 109.47345 * 59.99604 * 15 14 13 50 50 H 0.96999 * 119.99855 * 179.97438 * 19 18 16 51 51 H 1.09007 * 109.47427 * 177.70446 * 24 13 12 52 52 H 1.08998 * 109.47812 * 57.68754 * 24 13 12 53 53 H 1.09000 * 109.48747 * 187.20086 * 25 9 8 54 54 H 1.08992 * 109.49079 * 307.27476 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5044 -0.9555 0.9701 6 7 4.0161 -1.7971 2.0601 7 6 5.4558 -2.0851 1.8764 8 6 5.7031 -3.5098 2.4106 9 6 4.3192 -4.0115 2.8602 10 6 3.3349 -3.1183 2.0778 11 6 4.1394 -3.8136 4.3596 12 6 5.1025 -4.7368 5.1125 13 7 4.8465 -6.1301 4.7257 14 6 5.6441 -7.0574 5.5391 15 6 5.5558 -6.6498 7.0112 16 6 6.3747 -7.6008 7.8457 17 1 6.9046 -8.4146 7.3735 18 6 6.4472 -7.4317 9.2122 19 7 5.8022 -6.4402 9.7873 20 14 7.4615 -8.6108 10.2467 21 1 8.8782 -8.5648 9.8037 22 1 7.3769 -8.2144 11.6753 23 1 6.9363 -9.9902 10.0833 24 6 5.0932 -6.3407 3.2933 25 6 4.1296 -5.4735 2.4774 26 1 -0.3632 0.4513 0.9234 27 1 -0.3634 0.5741 -0.8523 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0828 1.3431 -0.0709 30 1 1.5899 1.9163 -0.8523 31 1 1.7045 1.8722 0.9234 32 1 1.5090 -1.7408 1.1755 33 1 1.7976 -0.2249 2.0628 34 1 3.9980 0.0159 0.9989 35 1 3.7062 -1.4375 0.0135 36 1 5.7124 -2.0355 0.8182 37 1 6.0528 -1.3661 2.4374 38 1 6.0988 -4.1474 1.6200 39 1 6.3898 -3.4834 3.2565 40 1 2.3792 -3.0516 2.5977 41 1 3.1972 -3.4939 1.0638 42 1 4.3532 -2.7765 4.6178 43 1 3.1132 -4.0540 4.6377 44 1 4.9498 -4.6237 6.1858 45 1 6.1298 -4.4727 4.8615 46 1 5.2590 -8.0699 5.4188 47 1 6.6841 -7.0234 5.2144 48 1 5.9411 -5.6372 7.1316 49 1 4.5159 -6.6838 7.3359 50 1 5.8529 -6.3215 10.7486 51 1 4.9339 -7.3907 3.0477 52 1 6.1206 -6.0639 3.0569 53 1 3.1031 -5.7741 2.6871 54 1 4.3365 -5.6009 1.4149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277945209.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:22:29 Heat of formation + Delta-G solvation = 7.182812 kcal Electronic energy + Delta-G solvation = -26710.732984 eV Core-core repulsion = 23295.853763 eV Total energy + Delta-G solvation = -3414.879221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.248 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.35900 -38.22519 -37.04833 -34.23964 -32.72150 -31.02203 -30.50128 -29.29284 -28.37377 -27.85738 -26.50926 -24.23052 -23.56893 -23.09676 -21.88013 -21.57878 -20.45332 -19.81151 -18.13955 -16.60893 -16.24798 -16.04195 -15.61105 -15.27195 -15.03570 -14.72099 -14.56395 -14.30975 -14.09132 -13.83281 -13.75304 -13.32668 -13.05311 -12.83364 -12.68925 -12.39106 -12.34089 -12.15186 -12.06399 -11.98712 -11.67143 -11.58217 -11.39565 -11.01172 -10.97564 -10.92944 -10.88800 -10.83986 -10.54188 -10.36746 -10.10789 -9.92369 -9.79631 -9.24636 -9.03551 -8.74150 -8.52672 -8.31636 -7.58256 -5.98250 -4.00431 3.34450 3.38744 3.41173 3.42235 4.06470 4.41099 4.47496 4.52628 4.65309 4.77761 4.80192 4.81046 4.96775 5.03333 5.11567 5.17321 5.25336 5.26547 5.31585 5.36479 5.37682 5.50388 5.51498 5.52563 5.56142 5.61794 5.66537 5.69473 5.76124 5.78708 5.83150 5.92291 6.00238 6.03160 6.18150 6.23299 6.31907 6.36369 6.43077 6.52790 6.57446 6.63420 6.69111 6.69614 6.79938 6.96117 6.98059 7.57995 7.68943 7.86607 7.89499 8.08665 8.45713 9.06099 9.62978 11.13043 Molecular weight = 309.25amu Principal moments of inertia in cm(-1) A = 0.028210 B = 0.002330 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.321383 B =12015.029578 C =12274.013218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.021 3.979 4 C 0.056 3.944 5 C 0.052 3.948 6 N -0.516 5.516 7 C 0.041 3.959 8 C -0.124 4.124 9 C -0.057 4.057 10 C 0.045 3.955 11 C -0.093 4.093 12 C 0.051 3.949 13 N -0.539 5.539 14 C 0.063 3.937 15 C 0.022 3.978 16 C -0.522 4.522 17 H 0.053 0.947 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.892 3.108 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.057 3.943 25 C -0.100 4.100 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.025 0.975 46 H 0.060 0.940 47 H 0.017 0.983 48 H 0.020 0.980 49 H 0.024 0.976 50 H 0.261 0.739 51 H 0.067 0.933 52 H 0.026 0.974 53 H 0.070 0.930 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 13.122 -21.338 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.274 5.274 3 C -0.127 4.127 4 C -0.072 4.072 5 C -0.077 4.077 6 N -0.240 5.240 7 C -0.087 4.087 8 C -0.162 4.162 9 C -0.058 4.058 10 C -0.082 4.082 11 C -0.131 4.131 12 C -0.077 4.077 13 N -0.264 5.264 14 C -0.064 4.064 15 C -0.016 4.016 16 C -0.560 4.560 17 H 0.071 0.929 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.071 4.071 25 C -0.138 4.138 26 H 0.045 0.955 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.043 0.957 46 H 0.079 0.921 47 H 0.035 0.965 48 H 0.039 0.961 49 H 0.043 0.957 50 H 0.071 0.929 51 H 0.086 0.914 52 H 0.044 0.956 53 H 0.089 0.911 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.488 13.183 -21.032 25.927 hybrid contribution 1.315 -0.454 0.401 1.448 sum -6.173 12.729 -20.631 25.015 Atomic orbital electron populations 1.22370 0.87046 1.02376 1.00527 1.61948 1.08055 1.14030 1.43367 1.22439 1.01016 0.88780 1.00489 1.22137 0.95049 0.98592 0.91469 1.22222 0.94635 0.98176 0.92649 1.64751 1.03272 1.13599 1.42386 1.22857 0.89346 0.97343 0.99162 1.22518 0.97798 0.94867 1.01056 1.20951 0.93900 0.94373 0.96535 1.23252 0.98076 0.88259 0.98663 1.21415 1.00429 0.99182 0.92095 1.22260 0.96280 0.87743 1.01419 1.61995 1.57326 1.04646 1.02423 1.22291 0.93045 0.95011 0.96042 1.19237 0.97716 0.96700 0.87903 1.21157 1.29844 1.13008 0.92036 0.92860 1.24994 0.95781 0.95537 0.98026 1.69957 1.42489 1.30340 1.10491 0.86656 0.80690 0.81413 0.79210 1.20329 1.21290 1.20231 1.22031 0.96568 0.99181 0.89354 1.21479 1.00740 0.93450 0.98152 0.95516 0.91363 0.91285 0.91176 0.91513 0.95455 0.90533 0.93801 0.90939 0.94002 0.94100 0.90485 0.91661 0.90510 0.90024 0.93782 0.91187 0.91468 0.88890 0.95656 0.92111 0.96452 0.96145 0.95727 0.92947 0.91442 0.95614 0.91102 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.57 60.06 0.57 0.75 16 2 N -0.55 -4.64 5.02 -251.26 -1.26 -5.90 16 3 C 0.02 0.15 9.32 60.06 0.56 0.71 16 4 C 0.06 0.50 4.87 -3.82 -0.02 0.48 16 5 C 0.05 0.49 4.66 -3.82 -0.02 0.47 16 6 N -0.52 -5.53 5.32 -230.64 -1.23 -6.76 16 7 C 0.04 0.43 6.71 -2.64 -0.02 0.41 16 8 C -0.12 -1.43 5.10 -25.65 -0.13 -1.57 16 9 C -0.06 -0.69 0.57 -154.09 -0.09 -0.78 16 10 C 0.05 0.49 4.20 -2.20 -0.01 0.48 16 11 C -0.09 -1.35 4.78 -26.99 -0.13 -1.48 16 12 C 0.05 0.89 4.69 -3.75 -0.02 0.88 16 13 N -0.54 -9.91 4.79 -234.47 -1.12 -11.04 16 14 C 0.06 1.35 5.21 -3.83 -0.02 1.33 16 15 C 0.02 0.56 4.22 -27.88 -0.12 0.45 16 16 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 20 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.06 0.86 5.27 -3.75 -0.02 0.84 16 25 C -0.10 -1.24 4.74 -26.99 -0.13 -1.37 16 26 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 28 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.07 0.48 6.55 -51.93 -0.34 0.14 16 30 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 31 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.71 6.64 -51.93 -0.34 0.36 16 33 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 34 H 0.07 0.66 6.73 -51.93 -0.35 0.31 16 35 H 0.04 0.41 7.97 -51.93 -0.41 0.00 16 36 H 0.04 0.39 7.67 -51.93 -0.40 0.00 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.71 7.75 -51.93 -0.40 0.31 16 39 H 0.08 0.98 6.28 -51.93 -0.33 0.66 16 40 H 0.08 0.89 7.49 -51.93 -0.39 0.50 16 41 H 0.04 0.46 7.89 -51.93 -0.41 0.05 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.09 1.91 5.77 -51.93 -0.30 1.61 16 45 H 0.03 0.45 6.60 -51.93 -0.34 0.11 16 46 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 47 H 0.02 0.37 8.08 -51.93 -0.42 -0.05 16 48 H 0.02 0.56 6.20 -51.92 -0.32 0.23 16 49 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 51 H 0.07 0.98 8.12 -51.92 -0.42 0.56 16 52 H 0.03 0.39 7.56 -51.93 -0.39 -0.01 16 53 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 54 H 0.06 0.63 8.04 -51.93 -0.42 0.22 16 LS Contribution 396.78 15.07 5.98 5.98 Total: -1.00 -29.80 396.78 -12.51 -42.30 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -10.60 Total: -3.14 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 0.01 Total: -12.03 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -2.87 Total: -49.90 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.80 -12.51 -42.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277945209.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.486 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds