Wall clock time and date at job start Fri Apr 10 2020 22:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 111.00339 * 2 1 4 4 C 1.46906 * 111.00327 * 123.95981 * 2 1 3 5 5 C 1.52996 * 109.47090 * 66.03804 * 4 2 1 6 6 N 1.46898 * 109.46897 * 180.02562 * 5 4 2 7 7 C 1.49937 * 111.00072 * 190.00029 * 6 5 4 8 8 C 1.53701 * 106.27278 * 164.82620 * 7 6 5 9 9 C 1.51743 * 110.97895 * 103.78444 * 8 7 6 10 10 H 1.08996 * 109.14570 * 59.70217 * 9 8 7 11 11 C 1.53621 * 110.85635 * 180.54521 * 9 8 7 12 12 N 1.47593 * 105.61447 * 149.71643 * 11 9 8 13 13 C 1.46897 * 110.99986 * 208.20726 * 12 11 9 14 14 C 1.53000 * 109.47140 * 190.00133 * 13 12 11 15 15 C 1.50693 * 109.47273 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00265 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00285 * 179.97438 * 15 14 13 18 18 N 1.31523 * 120.00053 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00458 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46918 * 90.00075 * 19 17 15 21 21 H 1.48495 * 109.47563 * 210.00341 * 19 17 15 22 22 H 1.48496 * 109.46872 * 330.00501 * 19 17 15 23 23 C 1.47207 * 107.67458 * 329.89048 * 12 11 9 24 24 C 1.53832 * 107.84270 * 20.23306 * 23 12 11 25 25 H 1.08998 * 111.84800 * 118.59389 * 24 23 12 26 26 C 1.52021 * 109.17971 * 242.05477 * 24 23 12 27 27 C 1.43635 * 111.00045 * 70.19988 * 6 5 4 28 28 H 1.09006 * 109.46397 * 296.04679 * 1 2 3 29 29 H 1.08993 * 109.47178 * 56.04114 * 1 2 3 30 30 H 1.08999 * 109.47298 * 176.04915 * 1 2 3 31 31 H 1.09005 * 109.47439 * 183.95814 * 3 2 1 32 32 H 1.09002 * 109.47209 * 303.95624 * 3 2 1 33 33 H 1.08993 * 109.46869 * 63.95724 * 3 2 1 34 34 H 1.09007 * 109.46285 * 306.04174 * 4 2 1 35 35 H 1.08999 * 109.46760 * 186.04309 * 4 2 1 36 36 H 1.09005 * 109.46869 * 60.00595 * 5 4 2 37 37 H 1.09002 * 109.47505 * 300.00636 * 5 4 2 38 38 H 1.09002 * 110.10740 * 284.04971 * 7 6 5 39 39 H 1.09000 * 110.10401 * 45.61012 * 7 6 5 40 40 H 1.09001 * 109.16891 * 224.38264 * 8 7 6 41 41 H 1.08999 * 109.16390 * 343.58968 * 8 7 6 42 42 H 1.09001 * 110.21681 * 268.75071 * 11 9 8 43 43 H 1.08997 * 110.21878 * 30.67939 * 11 9 8 44 44 H 1.09004 * 109.46633 * 309.99595 * 13 12 11 45 45 H 1.08992 * 109.47475 * 70.00139 * 13 12 11 46 46 H 1.08996 * 109.47090 * 300.00127 * 14 13 12 47 47 H 1.09005 * 109.47133 * 59.99806 * 14 13 12 48 48 H 0.97000 * 120.00190 * 179.97438 * 18 17 15 49 49 H 1.09002 * 109.78430 * 260.65127 * 23 12 11 50 50 H 1.09001 * 109.79494 * 139.82681 * 23 12 11 51 51 H 1.08996 * 108.96132 * 78.80867 * 26 24 23 52 52 H 1.09006 * 108.95937 * 320.14609 * 26 24 23 53 53 H 1.08998 * 108.29062 * 306.31473 * 27 6 5 54 54 H 1.09003 * 108.28593 * 63.22217 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6314 -2.2427 0.9702 6 7 2.1574 -3.0086 2.1080 7 6 2.0347 -4.4832 1.8658 8 6 2.9404 -5.1667 2.9027 9 6 2.1196 -5.7677 4.0286 10 1 1.4310 -6.5044 3.6152 11 6 3.0283 -6.4383 5.0701 12 7 2.3187 -6.3099 6.3579 13 6 3.2663 -6.2745 7.4798 14 6 2.4998 -6.3926 8.7987 15 6 3.4719 -6.3569 9.9496 16 1 4.5305 -6.2594 9.7595 17 6 3.0098 -6.4478 11.2454 18 7 1.7205 -6.5661 11.4770 19 14 4.2147 -6.4029 12.6722 20 1 4.4161 -4.9970 13.1059 21 1 3.6722 -7.1971 13.8035 22 1 5.5138 -6.9788 12.2412 23 6 1.5170 -5.0764 6.3054 24 6 1.3249 -4.7017 4.8258 25 1 0.2727 -4.6994 4.5413 26 6 1.9669 -3.3485 4.5658 27 6 1.4373 -2.7015 3.3123 28 1 -0.3632 0.4513 0.9234 29 1 -0.3633 0.5740 -0.8523 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7045 1.8722 0.9233 34 1 1.5611 -0.3873 2.0628 35 1 3.0798 -0.6612 1.1754 36 1 2.0657 -2.6214 0.0450 37 1 0.5471 -2.3475 0.9322 38 1 1.0012 -4.8009 2.0036 39 1 2.3698 -4.7264 0.8575 40 1 3.5136 -5.9542 2.4134 41 1 3.6280 -4.4301 3.3181 42 1 3.1725 -7.4900 4.8227 43 1 3.9894 -5.9263 5.1168 44 1 3.9660 -7.1056 7.3906 45 1 3.8157 -5.3334 7.4619 46 1 1.8000 -5.5617 8.8878 47 1 1.9503 -7.3338 8.8166 48 1 1.3954 -6.6303 12.3887 49 1 2.0408 -4.2736 6.8242 50 1 0.5467 -5.2467 6.7719 51 1 3.0444 -3.4806 4.4680 52 1 1.7677 -2.6932 5.4138 53 1 1.4511 -1.6207 3.4530 54 1 0.4006 -3.0111 3.1793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277945410.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:22:35 Heat of formation + Delta-G solvation = 13.219614 kcal Electronic energy + Delta-G solvation = -26566.246733 eV Core-core repulsion = 23151.629287 eV Total energy + Delta-G solvation = -3414.617446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.248 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.38247 -38.43771 -37.05602 -34.29633 -32.72489 -32.38067 -30.51352 -28.88933 -28.16663 -27.97893 -26.46750 -24.30069 -23.54125 -23.27687 -21.58716 -21.28457 -20.78538 -19.84126 -18.56289 -16.82687 -16.41249 -16.04889 -15.70738 -15.55803 -15.31575 -14.93452 -14.62266 -14.45952 -14.03936 -13.71435 -13.55911 -13.40006 -13.04508 -12.80262 -12.65910 -12.42834 -12.38838 -12.16183 -12.06379 -11.95260 -11.85628 -11.69187 -11.40563 -11.17592 -11.10137 -10.93717 -10.77456 -10.72977 -10.47573 -10.36242 -10.20870 -10.04651 -9.76569 -9.32555 -9.08764 -8.81425 -8.59002 -8.31206 -7.66782 -5.96763 -3.99136 3.30937 3.33408 3.39530 3.43037 3.95816 4.42350 4.52089 4.57426 4.65527 4.69054 4.75901 4.76463 4.87662 4.97795 5.03200 5.08650 5.11231 5.16923 5.21767 5.25792 5.33794 5.38968 5.47081 5.48616 5.50596 5.52257 5.56902 5.61563 5.67551 5.69744 5.81844 5.91127 5.97931 6.03096 6.06251 6.17938 6.20421 6.25959 6.32901 6.48427 6.53347 6.58301 6.59375 6.63107 6.82006 6.96167 7.02374 7.56397 7.58088 7.81575 7.93813 8.12693 8.47024 9.08435 9.64279 11.14580 Molecular weight = 309.25amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.002321 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.673852 B =12062.325587 C =12655.938153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.548 5.548 3 C 0.026 3.974 4 C 0.057 3.943 5 C 0.056 3.944 6 N -0.522 5.522 7 C 0.048 3.952 8 C -0.112 4.112 9 C -0.091 4.091 10 H 0.070 0.930 11 C 0.046 3.954 12 N -0.525 5.525 13 C 0.059 3.941 14 C 0.030 3.970 15 C -0.521 4.521 16 H 0.053 0.947 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.052 3.948 24 C -0.092 4.092 25 H 0.076 0.924 26 C -0.118 4.118 27 C 0.053 3.947 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.059 0.941 45 H 0.021 0.979 46 H 0.015 0.985 47 H 0.024 0.976 48 H 0.260 0.740 49 H 0.048 0.952 50 H 0.074 0.926 51 H 0.079 0.921 52 H 0.067 0.933 53 H 0.064 0.936 54 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.888 11.485 -25.067 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.071 4.071 5 C -0.073 4.073 6 N -0.246 5.246 7 C -0.079 4.079 8 C -0.150 4.150 9 C -0.111 4.111 10 H 0.088 0.912 11 C -0.082 4.082 12 N -0.249 5.249 13 C -0.068 4.068 14 C -0.008 4.008 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.076 4.076 24 C -0.111 4.111 25 H 0.094 0.906 26 C -0.155 4.155 27 C -0.076 4.076 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.039 0.961 46 H 0.033 0.967 47 H 0.042 0.958 48 H 0.070 0.930 49 H 0.066 0.934 50 H 0.092 0.908 51 H 0.098 0.902 52 H 0.085 0.915 53 H 0.082 0.918 54 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.655 10.949 -25.191 27.517 hybrid contribution -0.093 0.947 1.485 1.764 sum -1.747 11.896 -23.706 26.580 Atomic orbital electron populations 1.22455 0.87516 1.02376 1.00486 1.61907 1.07957 1.13991 1.43394 1.22370 1.00918 0.88508 1.00480 1.22128 1.01018 0.93005 0.90922 1.22112 0.97597 0.93205 0.94351 1.63045 1.54035 1.05118 1.02421 1.23007 0.98858 0.86848 0.99158 1.21645 0.98292 0.99873 0.95214 1.21836 0.97150 0.97029 0.95042 0.91173 1.22745 0.95618 1.00151 0.89655 1.63791 1.23508 1.35278 1.02319 1.22491 0.93861 0.98626 0.91842 1.19046 0.95291 0.97781 0.88672 1.21206 0.93418 1.50202 0.91176 0.92844 1.25002 0.95089 0.95378 0.98915 1.69980 1.12629 1.50311 1.20328 0.86601 0.81344 0.77944 0.82144 1.20736 1.21216 1.19897 1.22711 0.99282 0.91530 0.94052 1.22059 0.99047 0.94355 0.95633 0.90573 1.21274 1.02211 0.96035 0.96013 1.21137 0.95313 1.00253 0.90852 0.95633 0.91395 0.91194 0.91174 0.91344 0.95626 0.94655 0.89818 0.89868 0.94820 0.93606 0.90868 0.91737 0.89858 0.90913 0.94426 0.92268 0.96079 0.96668 0.95801 0.93047 0.93398 0.90789 0.90226 0.91460 0.91776 0.95751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.32 60.06 0.56 0.70 16 2 N -0.55 -4.36 5.02 -251.26 -1.26 -5.62 16 3 C 0.03 0.17 9.57 60.06 0.57 0.74 16 4 C 0.06 0.48 4.95 -3.82 -0.02 0.46 16 5 C 0.06 0.47 4.86 -3.83 -0.02 0.46 16 6 N -0.52 -5.05 4.59 -235.67 -1.08 -6.13 16 7 C 0.05 0.45 5.48 -1.76 -0.01 0.44 16 8 C -0.11 -1.17 4.65 -27.00 -0.13 -1.29 16 9 C -0.09 -1.13 2.61 -89.86 -0.23 -1.36 16 10 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 11 C 0.05 0.70 6.10 -3.12 -0.02 0.68 16 12 N -0.53 -9.83 5.18 -232.84 -1.21 -11.04 16 13 C 0.06 1.28 4.59 -3.83 -0.02 1.26 16 14 C 0.03 0.79 5.03 -27.89 -0.14 0.65 16 15 C -0.52 -15.03 9.11 -34.45 -0.31 -15.34 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.05 0.89 5.45 -3.22 -0.02 0.87 16 24 C -0.09 -1.20 3.12 -89.61 -0.28 -1.48 16 25 H 0.08 0.95 7.71 -51.93 -0.40 0.55 16 26 C -0.12 -1.38 4.51 -28.39 -0.13 -1.51 16 27 C 0.05 0.55 4.56 -6.72 -0.03 0.52 16 28 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.07 0.47 6.47 -51.93 -0.34 0.14 16 31 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 32 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.04 0.32 6.52 -51.93 -0.34 -0.02 16 35 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 36 H 0.08 0.71 7.94 -51.93 -0.41 0.30 16 37 H 0.03 0.29 6.45 -51.93 -0.34 -0.05 16 38 H 0.05 0.44 7.41 -51.93 -0.38 0.06 16 39 H 0.07 0.61 7.93 -51.93 -0.41 0.20 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.97 5.57 -51.93 -0.29 0.68 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.57 7.66 -51.93 -0.40 0.17 16 44 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 45 H 0.02 0.46 7.80 -51.93 -0.41 0.05 16 46 H 0.01 0.42 7.53 -51.93 -0.39 0.03 16 47 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.05 0.86 6.73 -51.93 -0.35 0.51 16 50 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 51 H 0.08 1.01 5.68 -51.93 -0.29 0.72 16 52 H 0.07 0.81 7.67 -51.93 -0.40 0.41 16 53 H 0.06 0.64 6.24 -51.93 -0.32 0.32 16 54 H 0.02 0.26 7.29 -51.93 -0.38 -0.12 16 LS Contribution 394.46 15.07 5.94 5.94 Total: -1.00 -30.37 394.46 -12.66 -43.02 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -10.45 Total: -3.93 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -0.32 Total: -12.63 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -2.81 Total: -49.31 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.37 -12.66 -43.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277945410.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.241 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds