Wall clock time and date at job start Fri Apr 10 2020 22:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46900 * 110.99871 * 2 1 4 4 C 1.46898 * 110.99834 * 123.95350 * 2 1 3 5 5 C 1.52995 * 109.47489 * 169.99799 * 4 2 1 6 6 N 1.46897 * 109.47604 * 179.97438 * 5 4 2 7 7 C 1.46900 * 110.99749 * 180.02562 * 6 5 4 8 8 C 1.53143 * 109.42486 * 205.00248 * 7 6 5 9 9 C 1.53710 * 108.88397 * 185.95972 * 8 7 6 10 10 H 1.09006 * 112.61259 * 188.04309 * 9 8 7 11 11 C 1.54600 * 107.81308 * 312.37762 * 9 8 7 12 12 C 1.54285 * 104.84086 * 88.55976 * 11 9 8 13 13 C 1.54603 * 104.84295 * 0.02562 * 12 11 9 14 14 H 1.08997 * 112.21911 * 146.85781 * 13 12 11 15 15 C 1.53130 * 109.38427 * 84.77010 * 7 6 5 16 16 N 1.48713 * 104.22369 * 25.17751 * 13 12 11 17 17 C 1.46901 * 111.00655 * 77.51288 * 16 13 12 18 18 C 1.52992 * 109.47859 * 170.00178 * 17 16 13 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.47212 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00129 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99861 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99913 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99734 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47432 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46890 * 120.00210 * 24 22 20 27 27 H 1.48501 * 109.47062 * 240.00257 * 24 22 20 28 28 H 1.08995 * 109.47207 * 296.04954 * 1 2 3 29 29 H 1.09003 * 109.46628 * 56.04560 * 1 2 3 30 30 H 1.08993 * 109.47079 * 176.04584 * 1 2 3 31 31 H 1.09001 * 109.46784 * 183.95139 * 3 2 1 32 32 H 1.09002 * 109.46838 * 303.94790 * 3 2 1 33 33 H 1.08996 * 109.47343 * 63.95192 * 3 2 1 34 34 H 1.09006 * 109.47089 * 49.99405 * 4 2 1 35 35 H 1.09008 * 109.46877 * 290.00159 * 4 2 1 36 36 H 1.09004 * 109.46538 * 59.99755 * 5 4 2 37 37 H 1.09003 * 109.47202 * 300.00794 * 5 4 2 38 38 H 1.00897 * 110.99846 * 303.95765 * 6 5 4 39 39 H 1.08996 * 109.43002 * 324.89263 * 7 6 5 40 40 H 1.09001 * 109.56659 * 66.13700 * 8 7 6 41 41 H 1.08999 * 109.57034 * 305.78141 * 8 7 6 42 42 H 1.09006 * 110.36293 * 329.72835 * 11 9 8 43 43 H 1.08995 * 110.45924 * 207.45154 * 11 9 8 44 44 H 1.08996 * 110.36921 * 241.15250 * 12 11 9 45 45 H 1.09005 * 110.45317 * 118.88885 * 12 11 9 46 46 H 1.09001 * 109.57400 * 54.24145 * 15 7 6 47 47 H 1.08999 * 109.57037 * 293.88024 * 15 7 6 48 48 H 1.09002 * 109.46980 * 49.99837 * 17 16 13 49 49 H 1.09001 * 109.46628 * 290.00259 * 17 16 13 50 50 H 1.09002 * 109.47103 * 59.99734 * 18 17 16 51 51 H 1.08998 * 109.46862 * 300.00546 * 18 17 16 52 52 H 1.09002 * 109.47153 * 59.99783 * 19 18 17 53 53 H 1.09001 * 109.46832 * 299.99974 * 19 18 17 54 54 H 0.97002 * 119.99768 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9704 6 7 4.0309 -1.7209 2.1083 7 6 5.4806 -1.9221 1.9817 8 6 5.8912 -3.1736 2.7630 9 6 7.4239 -3.2890 2.7477 10 1 7.7774 -4.2315 3.1659 11 6 7.8993 -3.0808 1.2914 12 6 8.0982 -1.5570 1.1546 13 6 7.7255 -0.9829 2.5409 14 1 8.3170 -0.1035 2.7954 15 6 6.2141 -0.6997 2.5410 16 7 7.9629 -2.1116 3.4796 17 6 9.3965 -2.2741 3.7561 18 6 9.5853 -3.2679 4.9038 19 6 11.0785 -3.4374 5.1912 20 6 11.2644 -4.4159 6.3222 21 1 10.4037 -4.8715 6.7891 22 6 12.5334 -4.7301 6.7603 23 7 13.5815 -4.1756 6.1915 24 14 12.7639 -5.9434 8.1618 25 1 11.4368 -6.4220 8.6255 26 1 13.5687 -7.0986 7.6891 27 1 13.4695 -5.2748 9.2844 28 1 -0.3633 0.4513 0.9232 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0829 1.3432 -0.0708 32 1 1.5899 1.9163 -0.8525 33 1 1.7044 1.8724 0.9232 34 1 1.5089 -1.7406 1.1757 35 1 1.7975 -0.2247 2.0628 36 1 3.9909 0.0193 0.9324 37 1 3.7024 -1.4966 0.0452 38 1 3.8035 -1.2715 2.9826 39 1 5.7385 -2.0502 0.9305 40 1 5.4539 -4.0557 2.2954 41 1 5.5415 -3.0926 3.7922 42 1 7.1398 -3.4285 0.5911 43 1 8.8404 -3.6032 1.1195 44 1 7.4367 -1.1555 0.3870 45 1 9.1370 -1.3283 0.9165 46 1 5.8789 -0.5074 3.5602 47 1 6.0054 0.1687 1.9162 48 1 9.8240 -1.3111 4.0352 49 1 9.8981 -2.6495 2.8641 50 1 9.1577 -4.2309 4.6247 51 1 9.0836 -2.8924 5.7957 52 1 11.5064 -2.4746 5.4702 53 1 11.5797 -3.8131 4.2992 54 1 14.4743 -4.3965 6.4999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277951534.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:22:40 Heat of formation + Delta-G solvation = -20.875581 kcal Electronic energy + Delta-G solvation = -26388.881472 eV Core-core repulsion = 22972.785548 eV Total energy + Delta-G solvation = -3416.095924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.248 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.88692 -38.85116 -37.15597 -35.95759 -34.21032 -32.37777 -32.00028 -31.27389 -29.00236 -28.47743 -27.76323 -25.30502 -24.93507 -24.15810 -22.81038 -22.06879 -21.81802 -20.95865 -19.67171 -18.52518 -17.49932 -17.24412 -16.65876 -16.48661 -16.25197 -15.92735 -15.78864 -15.33722 -14.98012 -14.84956 -14.59700 -14.38081 -14.20287 -13.97051 -13.81108 -13.51679 -13.42306 -13.27101 -13.16634 -12.73378 -12.68127 -12.61826 -12.59376 -12.46624 -12.44877 -12.26188 -12.08469 -11.92389 -11.88351 -11.56120 -11.40640 -11.31707 -11.24931 -11.21156 -10.90726 -10.56028 -9.44046 -9.36656 -9.21888 -8.20792 -6.31652 1.39129 1.39379 1.53248 2.40350 2.78368 2.97326 3.12092 3.45400 3.70914 3.75056 3.94488 4.05411 4.09384 4.15933 4.22961 4.25356 4.29027 4.29903 4.38436 4.44484 4.47017 4.48302 4.58199 4.63153 4.66602 4.69779 4.72009 4.77421 4.85013 4.92472 4.97150 4.99446 5.01987 5.03036 5.04076 5.06087 5.09435 5.15093 5.20020 5.22886 5.31044 5.33116 5.43719 5.52513 5.73980 5.85503 6.02258 6.03612 6.06399 6.15060 6.17481 6.28774 6.49894 6.85069 7.37435 8.91255 Molecular weight = 309.25amu Principal moments of inertia in cm(-1) A = 0.034087 B = 0.002136 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.233577 B =13104.247839 C =13427.504438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.560 5.560 3 C 0.020 3.980 4 C 0.062 3.938 5 C 0.070 3.930 6 N -0.687 5.687 7 C 0.100 3.900 8 C -0.084 4.084 9 C 0.057 3.943 10 H 0.079 0.921 11 C -0.147 4.147 12 C -0.144 4.144 13 C 0.060 3.940 14 H 0.088 0.912 15 C -0.123 4.123 16 N -0.510 5.510 17 C 0.060 3.940 18 C -0.084 4.084 19 C 0.026 3.974 20 C -0.541 4.541 21 H 0.058 0.942 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.966 3.034 25 H -0.263 1.263 26 H -0.277 1.277 27 H -0.277 1.277 28 H 0.026 0.974 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.025 0.975 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.343 0.657 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.087 0.913 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.028 0.972 50 H 0.045 0.955 51 H 0.048 0.952 52 H -0.009 1.009 53 H -0.011 1.011 54 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.071 10.186 -14.681 30.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.285 5.285 3 C -0.128 4.128 4 C -0.067 4.067 5 C -0.059 4.059 6 N -0.318 5.318 7 C -0.010 4.010 8 C -0.122 4.122 9 C -0.052 4.052 10 H 0.097 0.903 11 C -0.186 4.186 12 C -0.183 4.183 13 C -0.049 4.049 14 H 0.106 0.894 15 C -0.163 4.163 16 N -0.232 5.232 17 C -0.068 4.068 18 C -0.122 4.122 19 C -0.011 4.011 20 C -0.579 4.579 21 H 0.076 0.924 22 C -0.199 4.199 23 N -0.573 5.573 24 Si 0.790 3.210 25 H -0.187 1.187 26 H -0.202 1.202 27 H -0.202 1.202 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.161 0.839 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.106 0.894 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.046 0.954 50 H 0.064 0.936 51 H 0.066 0.934 52 H 0.009 0.991 53 H 0.008 0.992 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.196 9.442 -14.850 30.733 hybrid contribution 1.393 0.584 0.985 1.803 sum -23.804 10.026 -13.865 29.315 Atomic orbital electron populations 1.22410 0.86263 1.02752 1.00909 1.61924 1.08875 1.14477 1.43227 1.22478 1.01114 0.88375 1.00840 1.22005 0.95197 0.98421 0.91051 1.21852 0.93845 0.95988 0.94232 1.60475 1.12486 1.53390 1.05402 1.21572 0.85923 0.93698 0.99769 1.21533 0.92066 0.97967 1.00665 1.23119 0.96110 0.94193 0.91796 0.90309 1.22908 1.01408 0.96386 0.97893 1.22911 1.01637 0.95216 0.98522 1.23096 0.97160 0.94519 0.90127 0.89412 1.22324 0.93683 0.98684 1.01589 1.65441 1.14127 1.03957 1.39700 1.22046 0.88688 0.99098 0.96973 1.21311 0.96389 0.97469 0.97062 1.18970 0.92315 0.94960 0.94872 1.21712 0.92530 1.25655 1.18044 0.92422 1.25996 0.95779 0.98394 0.99770 1.70105 0.98650 1.45090 1.43497 0.85388 0.78482 0.78472 0.78646 1.18683 1.20248 1.20248 0.95519 0.90507 0.91034 0.91174 0.90616 0.95613 0.90390 0.94928 0.94867 0.91114 0.83879 0.89927 0.90823 0.92095 0.89405 0.93011 0.89414 0.92493 0.91628 0.90723 0.92019 0.95372 0.93625 0.93355 0.99096 0.99223 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.57 127.69 1.22 1.48 16 2 N -0.56 -7.54 5.02 -948.83 -4.76 -12.30 16 3 C 0.02 0.22 9.32 127.69 1.19 1.41 16 4 C 0.06 0.84 5.22 86.30 0.45 1.29 16 5 C 0.07 1.01 5.41 86.30 0.47 1.47 16 6 N -0.69 -11.04 6.25 -491.11 -3.07 -14.11 16 7 C 0.10 1.80 2.11 45.01 0.09 1.89 16 8 C -0.08 -1.84 5.23 30.88 0.16 -1.68 16 9 C 0.06 1.51 3.54 45.34 0.16 1.67 16 10 H 0.08 2.39 6.79 -2.38 -0.02 2.37 16 11 C -0.15 -3.38 5.25 31.57 0.17 -3.21 16 12 C -0.14 -3.04 5.45 31.58 0.17 -2.87 16 13 C 0.06 1.40 3.68 45.37 0.17 1.57 16 14 H 0.09 2.07 7.98 -2.39 -0.02 2.05 16 15 C -0.12 -2.29 4.87 30.90 0.15 -2.14 16 16 N -0.51 -14.97 4.96 -827.52 -4.11 -19.07 16 17 C 0.06 2.16 4.65 86.30 0.40 2.57 16 18 C -0.08 -3.68 5.28 30.59 0.16 -3.52 16 19 C 0.03 1.45 4.97 29.85 0.15 1.60 16 20 C -0.54 -31.90 9.11 25.60 0.23 -31.67 16 21 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 22 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 23 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 24 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 25 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 28 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 0.67 8.12 -2.39 -0.02 0.65 16 30 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 31 H 0.07 0.78 6.47 -2.39 -0.02 0.77 16 32 H 0.08 0.72 8.12 -2.39 -0.02 0.70 16 33 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.08 1.15 8.06 -2.38 -0.02 1.13 16 35 H 0.03 0.44 8.12 -2.38 -0.02 0.42 16 36 H 0.03 0.46 5.95 -2.38 -0.01 0.44 16 37 H 0.07 1.15 8.06 -2.39 -0.02 1.13 16 38 H 0.34 5.27 8.40 -89.70 -0.75 4.51 16 39 H 0.08 1.47 5.17 -2.39 -0.01 1.46 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 42 H 0.09 1.70 7.03 -2.38 -0.02 1.68 16 43 H 0.05 1.33 7.88 -2.39 -0.02 1.32 16 44 H 0.09 1.49 7.03 -2.39 -0.02 1.48 16 45 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.07 1.34 8.03 -2.39 -0.02 1.32 16 47 H 0.07 1.16 7.60 -2.39 -0.02 1.14 16 48 H 0.06 2.24 7.97 -2.39 -0.02 2.22 16 49 H 0.03 1.03 6.89 -2.39 -0.02 1.01 16 50 H 0.05 1.96 6.86 -2.39 -0.02 1.95 16 51 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 52 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 53 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 54 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -64.78 399.33 -3.73 -68.51 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.08 Total: 17.04 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 5.81 Total: -29.79 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -11.65 Total: -103.07 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -64.78 -3.73 -68.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277951534.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.633 kcal (2) G-P(sol) polarization free energy of solvation -64.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds