Wall clock time and date at job start Fri Apr 10 2020 22:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46906 * 110.99726 * 2 1 4 4 C 1.46902 * 110.99514 * 123.94737 * 2 1 3 5 5 C 1.53006 * 109.46626 * 170.00288 * 4 2 1 6 6 N 1.46902 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.47589 * 110.99926 * 73.88840 * 6 5 4 8 8 C 1.52894 * 87.78715 * 138.25313 * 7 6 5 9 9 C 1.47590 * 110.99588 * 170.00019 * 6 5 4 10 10 C 1.52603 * 114.18772 * 88.23455 * 8 7 6 11 11 C 1.53248 * 109.01675 * 186.24187 * 10 8 7 12 12 N 1.46832 * 109.42070 * 303.36723 * 11 10 8 13 13 C 1.46899 * 111.00035 * 187.89197 * 12 11 10 14 14 C 1.53002 * 109.46774 * 45.43254 * 13 12 11 15 15 C 1.52999 * 109.47061 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47239 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00102 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00156 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00525 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00299 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47111 * 59.99542 * 20 18 16 22 22 H 1.48499 * 109.47502 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47060 * 299.99978 * 20 18 16 24 24 C 1.46841 * 111.47585 * 63.59732 * 12 11 10 25 25 C 1.52606 * 114.18819 * 220.47420 * 8 7 6 26 26 H 1.08991 * 109.47389 * 296.04884 * 1 2 3 27 27 H 1.09000 * 109.46884 * 56.05217 * 1 2 3 28 28 H 1.09000 * 109.46605 * 176.04621 * 1 2 3 29 29 H 1.08997 * 109.46955 * 183.94997 * 3 2 1 30 30 H 1.09001 * 109.46689 * 303.94799 * 3 2 1 31 31 H 1.08992 * 109.47393 * 63.94993 * 3 2 1 32 32 H 1.09000 * 109.47263 * 50.00594 * 4 2 1 33 33 H 1.09001 * 109.47582 * 289.99874 * 4 2 1 34 34 H 1.08993 * 109.46955 * 300.00347 * 5 4 2 35 35 H 1.09000 * 109.47050 * 60.00176 * 5 4 2 36 36 H 1.09007 * 113.49748 * 252.98379 * 7 6 5 37 37 H 1.08999 * 113.50187 * 23.51804 * 7 6 5 38 38 H 1.08995 * 113.50159 * 336.47871 * 9 6 5 39 39 H 1.09004 * 113.49916 * 106.95670 * 9 6 5 40 40 H 1.09002 * 109.54498 * 306.10420 * 10 8 7 41 41 H 1.08999 * 109.54804 * 66.37515 * 10 8 7 42 42 H 1.08997 * 109.47970 * 183.38157 * 11 10 8 43 43 H 1.09001 * 109.47902 * 63.35208 * 11 10 8 44 44 H 1.08992 * 109.47240 * 165.43258 * 13 12 11 45 45 H 1.08999 * 109.47090 * 285.43388 * 13 12 11 46 46 H 1.09001 * 109.47381 * 299.99810 * 14 13 12 47 47 H 1.08999 * 109.47202 * 60.00203 * 14 13 12 48 48 H 1.09003 * 109.46875 * 299.99510 * 15 14 13 49 49 H 1.08993 * 109.47455 * 60.00153 * 15 14 13 50 50 H 0.96994 * 120.00548 * 180.02562 * 19 18 16 51 51 H 1.08999 * 109.48144 * 176.41080 * 24 12 11 52 52 H 1.08999 * 109.48151 * 56.37924 * 24 12 11 53 53 H 1.09002 * 109.55126 * 293.62126 * 25 8 7 54 54 H 1.09003 * 109.54304 * 53.79876 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.5045 -0.9552 0.9705 6 7 4.0309 -1.7206 2.1085 7 6 3.6543 -3.1441 2.0081 8 6 5.0714 -3.4900 2.4663 9 6 5.4292 -2.1281 1.8702 10 6 5.2364 -3.5711 3.9812 11 6 6.7198 -3.7672 4.3122 12 7 7.2180 -4.9674 3.6286 13 6 8.5812 -5.2952 4.0669 14 6 8.6643 -5.1964 5.5914 15 6 10.0843 -5.5372 6.0479 16 6 10.1660 -5.4405 7.5496 17 1 9.2926 -5.1633 8.1213 18 6 11.3557 -5.7060 8.1937 19 7 12.4192 -6.0441 7.4979 20 14 11.4573 -5.5854 10.0551 21 1 10.4977 -6.5400 10.6661 22 1 12.8351 -5.9175 10.4983 23 1 11.1194 -4.2034 10.4808 24 6 7.1558 -4.8196 2.1690 25 6 5.6938 -4.6750 1.7333 26 1 -0.3634 0.4512 0.9232 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3632 -1.0253 -0.0709 29 1 3.0828 1.3433 -0.0708 30 1 1.5898 1.9163 -0.8525 31 1 1.7044 1.8724 0.9232 32 1 1.5089 -1.7406 1.1758 33 1 1.7975 -0.2246 2.0629 34 1 3.7024 -1.4964 0.0454 35 1 3.9909 0.0195 0.9324 36 1 2.8830 -3.4408 2.7189 37 1 3.4363 -3.4652 0.9896 38 1 5.6952 -2.1722 0.8141 39 1 6.1522 -1.5690 2.4642 40 1 4.8801 -2.6472 4.4368 41 1 4.6622 -4.4140 4.3660 42 1 6.8393 -3.8863 5.3890 43 1 7.2849 -2.8974 3.9776 44 1 8.8293 -6.3095 3.7545 45 1 9.2854 -4.5945 3.6184 46 1 8.4163 -4.1821 5.9039 47 1 7.9601 -5.8972 6.0399 48 1 10.3327 -6.5515 5.7355 49 1 10.7882 -4.8362 5.5996 50 1 13.2561 -6.2312 7.9511 51 1 7.5909 -5.6998 1.6956 52 1 7.7137 -3.9324 1.8694 53 1 5.1475 -5.5851 1.9813 54 1 5.6474 -4.5037 0.6578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277951680.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:22:48 Heat of formation + Delta-G solvation = 34.014647 kcal Electronic energy + Delta-G solvation = -26034.378657 eV Core-core repulsion = 22620.662952 eV Total energy + Delta-G solvation = -3413.715705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.248 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.20071 -38.29634 -37.47553 -34.29420 -32.87307 -31.38708 -30.74244 -29.53490 -28.03050 -26.94631 -26.03065 -25.32426 -23.46666 -23.36091 -22.21390 -21.29904 -20.60890 -19.63276 -18.21166 -16.63338 -16.28335 -16.16550 -15.66353 -15.53548 -15.19826 -14.91713 -14.51064 -14.50430 -14.41957 -14.31634 -13.76351 -13.51752 -13.03433 -12.81664 -12.78242 -12.51168 -12.29260 -12.16255 -12.15266 -12.07764 -11.94402 -11.51003 -11.36352 -11.34037 -11.10064 -10.99826 -10.79686 -10.73258 -10.52724 -10.28914 -10.19428 -10.06398 -9.55914 -9.29089 -9.08474 -9.01098 -8.81634 -8.30917 -7.94005 -5.96458 -3.98555 3.34745 3.35809 3.39855 3.42623 3.96147 4.09621 4.29339 4.46136 4.49609 4.53414 4.71651 4.75887 4.92894 4.94219 5.00323 5.05084 5.14729 5.18168 5.21967 5.29321 5.31894 5.39077 5.39747 5.42701 5.47340 5.50023 5.54813 5.58715 5.61496 5.64621 5.65984 5.84466 5.88072 5.94390 6.00901 6.05576 6.11351 6.22526 6.27890 6.35123 6.36073 6.52594 6.56114 6.75499 6.82879 6.86908 7.14061 7.48170 7.48400 7.71258 7.86757 8.03812 8.47065 9.08358 9.65202 11.14888 Molecular weight = 309.25amu Principal moments of inertia in cm(-1) A = 0.028657 B = 0.002026 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.842680 B =13813.630703 C =14289.852639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.550 5.550 3 C 0.021 3.979 4 C 0.060 3.940 5 C 0.023 3.977 6 N -0.470 5.470 7 C 0.005 3.995 8 C -0.079 4.079 9 C 0.007 3.993 10 C -0.084 4.084 11 C 0.050 3.950 12 N -0.539 5.539 13 C 0.057 3.943 14 C -0.112 4.112 15 C 0.022 3.978 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.058 3.942 25 C -0.099 4.099 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.028 0.972 44 H 0.070 0.930 45 H 0.027 0.973 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.016 0.984 49 H 0.013 0.987 50 H 0.260 0.740 51 H 0.071 0.929 52 H 0.029 0.971 53 H 0.074 0.926 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.007 10.584 -17.533 30.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.274 5.274 3 C -0.128 4.128 4 C -0.068 4.068 5 C -0.106 4.106 6 N -0.192 5.192 7 C -0.124 4.124 8 C -0.080 4.080 9 C -0.122 4.122 10 C -0.121 4.121 11 C -0.078 4.078 12 N -0.264 5.264 13 C -0.070 4.070 14 C -0.150 4.150 15 C -0.016 4.016 16 C -0.557 4.557 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.070 4.070 25 C -0.137 4.137 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.047 0.953 44 H 0.088 0.912 45 H 0.045 0.955 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.034 0.966 49 H 0.032 0.968 50 H 0.070 0.930 51 H 0.090 0.910 52 H 0.047 0.953 53 H 0.093 0.907 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.168 10.362 -17.254 29.942 hybrid contribution 0.612 0.812 0.620 1.192 sum -21.556 11.174 -16.633 29.431 Atomic orbital electron populations 1.22371 0.87047 1.02339 1.00553 1.61950 1.08051 1.14104 1.43290 1.22448 1.01081 0.88692 1.00538 1.22003 0.94871 0.98419 0.91480 1.22629 0.95075 0.99768 0.93078 1.68907 1.04863 1.08886 1.36566 1.23871 0.98103 0.89585 1.00841 1.21620 0.95092 0.94161 0.97132 1.23858 0.92223 0.96049 1.00042 1.21257 0.96610 1.02174 0.92088 1.22232 0.94329 0.90701 1.00507 1.61916 1.24076 1.35759 1.04667 1.22261 0.86589 1.00206 0.97952 1.21800 1.01077 1.00552 0.91552 1.19068 0.89877 0.96791 0.95828 1.21214 0.95898 1.46310 0.92273 0.92760 1.25025 0.95871 0.95384 0.98225 1.69954 1.00966 1.47240 1.35425 0.86664 0.76969 0.78525 0.85869 1.20237 1.21335 1.20287 1.22022 0.95808 1.00090 0.89091 1.21482 0.96060 0.97989 0.98150 0.95558 0.91297 0.91318 0.91125 0.91414 0.95452 0.90814 0.93900 0.93322 0.90724 0.89793 0.91360 0.91486 0.89749 0.90772 0.90967 0.89184 0.95336 0.91170 0.95514 0.93130 0.92549 0.96569 0.96848 0.93014 0.91015 0.95327 0.90718 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.57 60.07 0.57 0.73 16 2 N -0.55 -4.28 5.02 -251.25 -1.26 -5.54 16 3 C 0.02 0.14 9.32 60.07 0.56 0.70 16 4 C 0.06 0.49 5.06 -3.82 -0.02 0.47 16 5 C 0.02 0.20 4.74 -3.82 -0.02 0.18 16 6 N -0.47 -4.57 6.20 -244.57 -1.52 -6.09 16 7 C 0.00 0.04 6.17 -7.26 -0.04 0.00 16 8 C -0.08 -0.81 0.85 -155.02 -0.13 -0.94 16 9 C 0.01 0.07 6.76 -7.25 -0.05 0.02 16 10 C -0.08 -0.98 5.29 -26.81 -0.14 -1.12 16 11 C 0.05 0.71 4.89 -3.73 -0.02 0.69 16 12 N -0.54 -8.12 4.76 -234.42 -1.12 -9.24 16 13 C 0.06 1.01 5.27 -3.82 -0.02 0.99 16 14 C -0.11 -2.34 4.39 -26.73 -0.12 -2.46 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 17 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.06 0.73 5.41 -3.73 -0.02 0.71 16 25 C -0.10 -1.01 5.34 -26.81 -0.14 -1.15 16 26 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 28 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 29 H 0.07 0.47 6.47 -51.93 -0.34 0.13 16 30 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 31 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.60 7.58 -51.93 -0.39 0.21 16 33 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 34 H 0.05 0.43 7.57 -51.93 -0.39 0.04 16 35 H 0.07 0.65 6.55 -51.93 -0.34 0.31 16 36 H 0.08 0.76 8.11 -51.92 -0.42 0.34 16 37 H 0.07 0.57 7.66 -51.93 -0.40 0.17 16 38 H 0.07 0.62 7.64 -51.93 -0.40 0.22 16 39 H 0.08 0.92 7.77 -51.93 -0.40 0.52 16 40 H 0.07 0.87 7.95 -51.93 -0.41 0.46 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.41 5.68 -51.93 -0.30 1.11 16 43 H 0.03 0.41 7.80 -51.93 -0.41 0.01 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 46 H 0.05 1.04 6.17 -51.93 -0.32 0.71 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 51 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 52 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 53 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 54 H 0.06 0.55 8.02 -51.93 -0.42 0.13 16 LS Contribution 405.70 15.07 6.11 6.11 Total: -1.00 -30.13 405.70 -13.01 -43.14 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -10.81 Total: -4.36 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -0.14 Total: -14.42 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -3.16 Total: -47.37 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.13 -13.01 -43.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277951680.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.155 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds