Wall clock time and date at job start Fri Apr 10 2020 22:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99953 * 2 1 4 4 C 1.46897 * 111.00285 * 123.95914 * 2 1 3 5 5 C 1.53003 * 109.47037 * 169.99405 * 4 2 1 6 6 N 1.46897 * 109.47037 * 179.97438 * 5 4 2 7 7 C 1.48057 * 110.99851 * 170.00402 * 6 5 4 8 8 C 1.53439 * 86.03954 * 222.72717 * 7 6 5 9 9 C 1.48048 * 111.00078 * 70.55250 * 6 5 4 10 10 C 1.52725 * 113.65543 * 269.04946 * 8 7 6 11 11 C 1.53305 * 108.88761 * 174.76126 * 10 8 7 12 12 C 1.53018 * 109.17997 * 55.40026 * 11 10 8 13 13 N 1.46823 * 109.78255 * 299.01069 * 12 11 10 14 14 C 1.46896 * 111.00042 * 187.59630 * 13 12 11 15 15 C 1.53006 * 109.47501 * 45.83978 * 14 13 12 16 16 C 1.52999 * 109.46997 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46573 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47474 * 90.00322 * 21 19 17 23 23 H 1.48507 * 109.46754 * 210.00056 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99887 * 21 19 17 25 25 C 1.47020 * 111.15609 * 63.52561 * 13 12 11 26 26 H 1.09006 * 109.46497 * 296.03981 * 1 2 3 27 27 H 1.08999 * 109.47339 * 56.03785 * 1 2 3 28 28 H 1.08997 * 109.47254 * 176.04935 * 1 2 3 29 29 H 1.08997 * 109.46592 * 183.96040 * 3 2 1 30 30 H 1.09003 * 109.47146 * 303.95663 * 3 2 1 31 31 H 1.08996 * 109.46844 * 63.96042 * 3 2 1 32 32 H 1.09000 * 109.46801 * 50.00054 * 4 2 1 33 33 H 1.08993 * 109.47039 * 289.99656 * 4 2 1 34 34 H 1.09003 * 109.46730 * 59.99692 * 5 4 2 35 35 H 1.08993 * 109.47411 * 300.00024 * 5 4 2 36 36 H 1.08996 * 113.77809 * 108.44811 * 7 6 5 37 37 H 1.08996 * 113.88153 * 337.02324 * 7 6 5 38 38 H 1.08992 * 113.78240 * 22.98700 * 9 6 5 39 39 H 1.09000 * 113.78428 * 251.54521 * 9 6 5 40 40 H 1.08995 * 109.57018 * 294.58530 * 10 8 7 41 41 H 1.09002 * 109.57058 * 54.93921 * 10 8 7 42 42 H 1.09001 * 109.51784 * 175.31195 * 11 10 8 43 43 H 1.09000 * 109.51831 * 295.43243 * 11 10 8 44 44 H 1.08997 * 109.42412 * 178.91135 * 12 11 10 45 45 H 1.09009 * 109.41975 * 59.10572 * 12 11 10 46 46 H 1.09000 * 109.47017 * 285.84124 * 14 13 12 47 47 H 1.08996 * 109.47227 * 165.84444 * 14 13 12 48 48 H 1.09000 * 109.46866 * 60.00053 * 15 14 13 49 49 H 1.09001 * 109.46611 * 300.00170 * 15 14 13 50 50 H 1.09000 * 109.47486 * 60.00167 * 16 15 14 51 51 H 1.09001 * 109.47362 * 299.99445 * 16 15 14 52 52 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 53 53 H 1.08998 * 109.50126 * 60.64644 * 25 13 12 54 54 H 1.09000 * 109.49887 * 180.76188 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5045 -0.9555 0.9700 6 7 4.0311 -1.7210 2.1078 7 6 5.4339 -2.1298 1.8685 8 6 5.0247 -3.4899 2.4491 9 6 3.5869 -3.1320 2.0491 10 6 5.2303 -3.5987 3.9586 11 6 4.6686 -4.9413 4.4404 12 6 5.3249 -6.0741 3.6484 13 7 5.0204 -5.9232 2.2201 14 6 5.4832 -7.0899 1.4570 15 6 5.0731 -8.3714 2.1855 16 6 5.5557 -9.5865 1.3909 17 6 5.1512 -10.8486 2.1082 18 1 4.6084 -10.7899 3.0400 19 6 5.4785 -12.0783 1.5773 20 7 6.1442 -12.1498 0.4454 21 14 4.9764 -13.6427 2.4661 22 1 3.6362 -14.0727 1.9926 23 1 5.9676 -14.7121 2.1840 24 1 4.9265 -13.3873 3.9281 25 6 5.5949 -4.6808 1.6835 26 1 -0.3632 0.4512 0.9234 27 1 -0.3634 0.5741 -0.8523 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0827 1.3432 -0.0710 30 1 1.5898 1.9164 -0.8524 31 1 1.7045 1.8723 0.9233 32 1 1.5090 -1.7407 1.1754 33 1 1.7977 -0.2249 2.0627 34 1 3.9910 0.0192 0.9320 35 1 3.7024 -1.4966 0.0448 36 1 6.1588 -1.5915 2.4790 37 1 5.7091 -2.1667 0.8145 38 1 3.3133 -3.4654 1.0481 39 1 2.8435 -3.3906 2.8031 40 1 6.2947 -3.5452 4.1869 41 1 4.7066 -2.7835 4.4581 42 1 4.8840 -5.0664 5.5016 43 1 3.5903 -4.9626 4.2827 44 1 4.9426 -7.0319 4.0012 45 1 6.4047 -6.0402 3.7943 46 1 6.5688 -7.0562 1.3644 47 1 5.0334 -7.0765 0.4642 48 1 3.9875 -8.4051 2.2780 49 1 5.5230 -8.3847 3.1782 50 1 6.6413 -9.5526 1.2987 51 1 5.1062 -9.5733 0.3980 52 1 6.3748 -13.0149 0.0722 53 1 6.6787 -4.7020 1.7980 54 1 5.3417 -4.5894 0.6272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277952255.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:22:54 Heat of formation + Delta-G solvation = 31.400173 kcal Electronic energy + Delta-G solvation = -26251.219212 eV Core-core repulsion = 22837.390135 eV Total energy + Delta-G solvation = -3413.829077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.248 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.98291 -38.22565 -37.34180 -34.35654 -32.88650 -31.64179 -30.92708 -28.71813 -27.95893 -26.64815 -26.37015 -25.31345 -24.18889 -22.68239 -22.26323 -21.17944 -20.66576 -19.45193 -18.29962 -16.50997 -16.24002 -16.10472 -15.65952 -15.56004 -15.10461 -14.89639 -14.78156 -14.37635 -14.31966 -14.07897 -13.68343 -13.29976 -13.28126 -12.77141 -12.72168 -12.68859 -12.30541 -12.19527 -12.07472 -12.02479 -11.73299 -11.46652 -11.41222 -11.32322 -11.00838 -10.92066 -10.83492 -10.56666 -10.52260 -10.36516 -10.28616 -10.04268 -9.56779 -9.31005 -9.04935 -8.90962 -8.72970 -8.32456 -7.97050 -5.97863 -3.99878 3.33383 3.39373 3.40405 3.42813 3.93976 4.01898 4.45071 4.49629 4.53949 4.63743 4.78572 4.82757 4.96155 4.99956 5.07097 5.13385 5.18796 5.22606 5.29281 5.30510 5.37891 5.41189 5.43472 5.51041 5.52681 5.53297 5.58869 5.62642 5.68466 5.69411 5.73672 5.80516 5.89155 5.93840 6.00232 6.03405 6.14842 6.20019 6.31553 6.35288 6.40309 6.60248 6.64296 6.73519 6.80719 6.92606 7.12097 7.43541 7.45768 7.70100 7.85225 8.02506 8.45678 9.07279 9.63945 11.13554 Molecular weight = 309.25amu Principal moments of inertia in cm(-1) A = 0.020056 B = 0.002257 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.780426 B =12403.635139 C =13036.236072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.549 5.549 3 C 0.022 3.978 4 C 0.060 3.940 5 C 0.025 3.975 6 N -0.482 5.482 7 C 0.011 3.989 8 C -0.077 4.077 9 C 0.025 3.975 10 C -0.090 4.090 11 C -0.115 4.115 12 C 0.047 3.953 13 N -0.534 5.534 14 C 0.056 3.944 15 C -0.111 4.111 16 C 0.022 3.978 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.069 3.931 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.028 0.972 46 H 0.027 0.973 47 H 0.070 0.930 48 H 0.056 0.944 49 H 0.050 0.950 50 H 0.013 0.987 51 H 0.016 0.984 52 H 0.260 0.740 53 H 0.032 0.968 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 27.162 2.532 27.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.127 4.127 4 C -0.068 4.068 5 C -0.104 4.104 6 N -0.204 5.204 7 C -0.118 4.118 8 C -0.078 4.078 9 C -0.103 4.103 10 C -0.128 4.128 11 C -0.153 4.153 12 C -0.081 4.081 13 N -0.259 5.259 14 C -0.070 4.070 15 C -0.149 4.149 16 C -0.016 4.016 17 C -0.556 4.556 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.060 4.060 26 H 0.044 0.956 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.046 0.954 46 H 0.045 0.955 47 H 0.088 0.912 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.031 0.969 51 H 0.034 0.966 52 H 0.069 0.931 53 H 0.050 0.950 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.014 27.258 2.479 28.024 hybrid contribution 0.564 -0.960 0.283 1.149 sum -5.450 26.298 2.762 26.999 Atomic orbital electron populations 1.22374 0.87002 1.02487 1.00440 1.61925 1.08082 1.13956 1.43371 1.22438 1.01016 0.88797 1.00415 1.22016 0.94979 0.98524 0.91306 1.22589 0.94979 0.99510 0.93322 1.68518 1.03978 1.10764 1.37183 1.23943 0.92315 0.95276 1.00258 1.21954 0.96128 0.93236 0.96516 1.23848 0.97201 0.87826 1.01460 1.21283 1.00721 0.98001 0.92757 1.21606 1.01132 0.93927 0.98607 1.22208 0.97780 0.99700 0.88384 1.62053 1.59236 1.01886 1.02696 1.22276 0.97262 0.89848 0.97662 1.21793 1.00694 0.93514 0.98898 1.19071 0.96253 0.90935 0.95308 1.21246 1.35725 0.91023 1.07615 0.92713 1.25036 0.95260 0.99217 0.95069 1.69966 1.39737 1.24722 1.19143 0.86600 0.78283 0.83089 0.80059 1.20657 1.21282 1.19904 1.22019 0.96327 0.89443 0.98208 0.95643 0.91320 0.91180 0.91187 0.91466 0.95599 0.90627 0.94071 0.90941 0.93296 0.89497 0.91201 0.90974 0.89417 0.92244 0.90994 0.91735 0.91173 0.89353 0.95408 0.95490 0.91190 0.92552 0.93134 0.96859 0.96584 0.93056 0.94973 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.57 60.07 0.57 0.76 16 2 N -0.55 -4.71 5.02 -251.26 -1.26 -5.97 16 3 C 0.02 0.15 9.32 60.07 0.56 0.71 16 4 C 0.06 0.54 5.02 -3.82 -0.02 0.52 16 5 C 0.02 0.23 4.74 -3.82 -0.02 0.21 16 6 N -0.48 -4.73 6.11 -240.35 -1.47 -6.20 16 7 C 0.01 0.11 7.11 -2.96 -0.02 0.09 16 8 C -0.08 -0.82 0.86 -154.43 -0.13 -0.95 16 9 C 0.03 0.26 6.12 -2.95 -0.02 0.25 16 10 C -0.09 -0.94 5.12 -26.71 -0.14 -1.08 16 11 C -0.11 -1.31 6.04 -26.56 -0.16 -1.47 16 12 C 0.05 0.66 4.85 -3.86 -0.02 0.64 16 13 N -0.53 -7.94 4.82 -234.81 -1.13 -9.07 16 14 C 0.06 0.99 5.29 -3.82 -0.02 0.97 16 15 C -0.11 -2.31 4.41 -26.73 -0.12 -2.43 16 16 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 17 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 21 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.07 0.86 4.58 -3.94 -0.02 0.84 16 26 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 28 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.07 0.48 6.47 -51.93 -0.34 0.14 16 30 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.72 7.46 -51.93 -0.39 0.33 16 33 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 34 H 0.07 0.63 6.55 -51.93 -0.34 0.29 16 35 H 0.05 0.48 7.70 -51.93 -0.40 0.08 16 36 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 37 H 0.07 0.63 7.75 -51.93 -0.40 0.22 16 38 H 0.07 0.81 7.69 -51.93 -0.40 0.41 16 39 H 0.09 0.97 7.65 -51.93 -0.40 0.57 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.74 8.01 -51.93 -0.42 0.32 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.83 7.69 -51.93 -0.40 0.44 16 44 H 0.09 1.36 5.69 -51.93 -0.30 1.06 16 45 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 46 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 47 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 49 H 0.05 1.03 6.17 -51.93 -0.32 0.71 16 50 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 53 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 54 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 LS Contribution 405.68 15.07 6.11 6.11 Total: -1.00 -29.94 405.68 -12.93 -42.88 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -10.81 Total: -3.98 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -0.10 Total: -14.14 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -3.12 Total: -47.72 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.94 -12.93 -42.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277952255.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.277 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds