Wall clock time and date at job start Fri Apr 10 2020 22:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99953 * 2 1 4 4 C 1.46897 * 111.00285 * 123.95914 * 2 1 3 5 5 C 1.53003 * 109.47037 * 169.99405 * 4 2 1 6 6 N 1.46897 * 109.47037 * 179.97438 * 5 4 2 7 7 C 1.48057 * 110.99851 * 170.00402 * 6 5 4 8 8 C 1.53439 * 86.03954 * 222.72717 * 7 6 5 9 9 C 1.48048 * 111.00078 * 70.55250 * 6 5 4 10 10 C 1.52725 * 113.65543 * 269.04946 * 8 7 6 11 11 C 1.53305 * 108.88761 * 174.76126 * 10 8 7 12 12 C 1.53018 * 109.17997 * 55.40026 * 11 10 8 13 13 N 1.46823 * 109.78255 * 299.01069 * 12 11 10 14 14 C 1.46896 * 111.00042 * 187.59630 * 13 12 11 15 15 C 1.53006 * 109.47501 * 45.83978 * 14 13 12 16 16 C 1.52999 * 109.46997 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46573 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47474 * 90.00322 * 21 19 17 23 23 H 1.48507 * 109.46754 * 210.00056 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99887 * 21 19 17 25 25 C 1.47020 * 111.15609 * 63.52561 * 13 12 11 26 26 H 1.09006 * 109.46497 * 296.03981 * 1 2 3 27 27 H 1.08999 * 109.47339 * 56.03785 * 1 2 3 28 28 H 1.08997 * 109.47254 * 176.04935 * 1 2 3 29 29 H 1.08997 * 109.46592 * 183.96040 * 3 2 1 30 30 H 1.09003 * 109.47146 * 303.95663 * 3 2 1 31 31 H 1.08996 * 109.46844 * 63.96042 * 3 2 1 32 32 H 1.09000 * 109.46801 * 50.00054 * 4 2 1 33 33 H 1.08993 * 109.47039 * 289.99656 * 4 2 1 34 34 H 1.09003 * 109.46730 * 59.99692 * 5 4 2 35 35 H 1.08993 * 109.47411 * 300.00024 * 5 4 2 36 36 H 1.08996 * 113.77809 * 108.44811 * 7 6 5 37 37 H 1.08996 * 113.88153 * 337.02324 * 7 6 5 38 38 H 1.08992 * 113.78240 * 22.98700 * 9 6 5 39 39 H 1.09000 * 113.78428 * 251.54521 * 9 6 5 40 40 H 1.08995 * 109.57018 * 294.58530 * 10 8 7 41 41 H 1.09002 * 109.57058 * 54.93921 * 10 8 7 42 42 H 1.09001 * 109.51784 * 175.31195 * 11 10 8 43 43 H 1.09000 * 109.51831 * 295.43243 * 11 10 8 44 44 H 1.08997 * 109.42412 * 178.91135 * 12 11 10 45 45 H 1.09009 * 109.41975 * 59.10572 * 12 11 10 46 46 H 1.09000 * 109.47017 * 285.84124 * 14 13 12 47 47 H 1.08996 * 109.47227 * 165.84444 * 14 13 12 48 48 H 1.09000 * 109.46866 * 60.00053 * 15 14 13 49 49 H 1.09001 * 109.46611 * 300.00170 * 15 14 13 50 50 H 1.09000 * 109.47486 * 60.00167 * 16 15 14 51 51 H 1.09001 * 109.47362 * 299.99445 * 16 15 14 52 52 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 53 53 H 1.08998 * 109.50126 * 60.64644 * 25 13 12 54 54 H 1.09000 * 109.49887 * 180.76188 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5045 -0.9555 0.9700 6 7 4.0311 -1.7210 2.1078 7 6 5.4339 -2.1298 1.8685 8 6 5.0247 -3.4899 2.4491 9 6 3.5869 -3.1320 2.0491 10 6 5.2303 -3.5987 3.9586 11 6 4.6686 -4.9413 4.4404 12 6 5.3249 -6.0741 3.6484 13 7 5.0204 -5.9232 2.2201 14 6 5.4832 -7.0899 1.4570 15 6 5.0731 -8.3714 2.1855 16 6 5.5557 -9.5865 1.3909 17 6 5.1512 -10.8486 2.1082 18 1 4.6084 -10.7899 3.0400 19 6 5.4785 -12.0783 1.5773 20 7 6.1442 -12.1498 0.4454 21 14 4.9764 -13.6427 2.4661 22 1 3.6362 -14.0727 1.9926 23 1 5.9676 -14.7121 2.1840 24 1 4.9265 -13.3873 3.9281 25 6 5.5949 -4.6808 1.6835 26 1 -0.3632 0.4512 0.9234 27 1 -0.3634 0.5741 -0.8523 28 1 -0.3633 -1.0252 -0.0708 29 1 3.0827 1.3432 -0.0710 30 1 1.5898 1.9164 -0.8524 31 1 1.7045 1.8723 0.9233 32 1 1.5090 -1.7407 1.1754 33 1 1.7977 -0.2249 2.0627 34 1 3.9910 0.0192 0.9320 35 1 3.7024 -1.4966 0.0448 36 1 6.1588 -1.5915 2.4790 37 1 5.7091 -2.1667 0.8145 38 1 3.3133 -3.4654 1.0481 39 1 2.8435 -3.3906 2.8031 40 1 6.2947 -3.5452 4.1869 41 1 4.7066 -2.7835 4.4581 42 1 4.8840 -5.0664 5.5016 43 1 3.5903 -4.9626 4.2827 44 1 4.9426 -7.0319 4.0012 45 1 6.4047 -6.0402 3.7943 46 1 6.5688 -7.0562 1.3644 47 1 5.0334 -7.0765 0.4642 48 1 3.9875 -8.4051 2.2780 49 1 5.5230 -8.3847 3.1782 50 1 6.6413 -9.5526 1.2987 51 1 5.1062 -9.5733 0.3980 52 1 6.3748 -13.0149 0.0722 53 1 6.6787 -4.7020 1.7980 54 1 5.3417 -4.5894 0.6272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277952255.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:22:52 Heat of formation + Delta-G solvation = 10.819913 kcal Electronic energy + Delta-G solvation = -26252.111639 eV Core-core repulsion = 22837.390135 eV Total energy + Delta-G solvation = -3414.721504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.248 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.85070 -39.19440 -38.18579 -35.99005 -34.51055 -32.59920 -32.50432 -29.69816 -28.52315 -28.31850 -27.17082 -26.18966 -25.64576 -23.66855 -23.56093 -22.35904 -21.51999 -20.91204 -19.19162 -18.48366 -17.19322 -16.95015 -16.73921 -16.40196 -16.36089 -16.15303 -15.89666 -15.69634 -15.17594 -15.07004 -14.78633 -14.51598 -14.14969 -14.08241 -13.85201 -13.67065 -13.43117 -13.28396 -13.12710 -13.03573 -12.77171 -12.66469 -12.62042 -12.52485 -12.35500 -12.29831 -12.08490 -11.89956 -11.68522 -11.56090 -11.36679 -11.31437 -11.17446 -11.11346 -10.84382 -10.54668 -9.74081 -9.35903 -9.19552 -8.20239 -6.31253 1.39738 1.41352 1.52386 2.40643 2.71676 2.89543 3.12726 3.24998 3.56442 3.70026 3.85535 3.99856 4.11789 4.15127 4.17582 4.22156 4.28750 4.31780 4.42244 4.47876 4.50081 4.57267 4.60179 4.61327 4.64643 4.67294 4.69485 4.71704 4.79916 4.81311 4.86820 4.91496 4.93877 4.97540 4.99134 5.03041 5.05087 5.09295 5.14784 5.24206 5.25633 5.38401 5.44802 5.48204 5.51431 5.73759 5.84915 5.95076 6.04222 6.12831 6.17584 6.24206 6.28396 6.85498 7.37822 8.91666 Molecular weight = 309.25amu Principal moments of inertia in cm(-1) A = 0.020056 B = 0.002257 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.780426 B =12403.635139 C =13036.236072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.563 5.563 3 C 0.022 3.978 4 C 0.066 3.934 5 C 0.031 3.969 6 N -0.483 5.483 7 C 0.018 3.982 8 C -0.076 4.076 9 C 0.028 3.972 10 C -0.084 4.084 11 C -0.108 4.108 12 C 0.046 3.954 13 N -0.537 5.537 14 C 0.068 3.932 15 C -0.094 4.094 16 C 0.026 3.974 17 C -0.541 4.541 18 H 0.060 0.940 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.966 3.034 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.263 1.263 25 C 0.070 3.930 26 H 0.028 0.972 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.025 0.975 46 H 0.021 0.979 47 H 0.065 0.935 48 H 0.053 0.947 49 H 0.055 0.945 50 H -0.011 1.011 51 H -0.009 1.009 52 H 0.263 0.737 53 H 0.032 0.968 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.002 28.345 3.704 29.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.288 5.288 3 C -0.126 4.126 4 C -0.062 4.062 5 C -0.098 4.098 6 N -0.205 5.205 7 C -0.111 4.111 8 C -0.077 4.077 9 C -0.101 4.101 10 C -0.122 4.122 11 C -0.146 4.146 12 C -0.082 4.082 13 N -0.261 5.261 14 C -0.060 4.060 15 C -0.132 4.132 16 C -0.012 4.012 17 C -0.579 4.579 18 H 0.078 0.922 19 C -0.201 4.201 20 N -0.574 5.574 21 Si 0.790 3.210 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.187 1.187 25 C -0.059 4.059 26 H 0.046 0.954 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.043 0.957 46 H 0.040 0.960 47 H 0.084 0.916 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.007 0.993 51 H 0.009 0.991 52 H 0.072 0.928 53 H 0.050 0.950 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.464 28.467 3.659 29.420 hybrid contribution 0.708 -1.294 -0.123 1.480 sum -5.757 27.173 3.536 28.000 Atomic orbital electron populations 1.22403 0.86319 1.02570 1.01041 1.61947 1.08887 1.14832 1.43115 1.22467 1.01140 0.88078 1.00922 1.21909 0.94814 0.98116 0.91344 1.22536 0.95117 0.99527 0.92617 1.68521 1.04250 1.10227 1.37538 1.23947 0.92283 0.94179 1.00693 1.21945 0.96156 0.92947 0.96623 1.23757 0.97011 0.88453 1.00836 1.21247 1.01103 0.97453 0.92372 1.21561 1.00583 0.93398 0.99039 1.22238 0.97822 1.00149 0.88013 1.62044 1.59358 1.01653 1.03034 1.22006 0.96801 0.89767 0.97403 1.21532 1.00180 0.92923 0.98532 1.18972 0.94500 0.92980 0.94727 1.21678 1.35914 0.92264 1.08040 0.92222 1.26012 0.95074 1.03113 0.95862 1.70100 1.40744 1.25831 1.20718 0.85434 0.78106 0.78278 0.79153 1.19744 1.20720 1.18697 1.22075 0.96313 0.88948 0.98529 0.95376 0.90283 0.91478 0.91021 0.90504 0.95451 0.91533 0.94542 0.90222 0.94083 0.88352 0.90727 0.91823 0.89870 0.91651 0.90214 0.90195 0.91593 0.91006 0.95656 0.96027 0.91633 0.92864 0.92631 0.99271 0.99088 0.92788 0.95001 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.57 127.69 1.22 1.55 16 2 N -0.56 -9.04 5.02 -948.85 -4.76 -13.80 16 3 C 0.02 0.28 9.32 127.69 1.19 1.47 16 4 C 0.07 1.13 5.02 86.30 0.43 1.56 16 5 C 0.03 0.52 4.74 86.30 0.41 0.93 16 6 N -0.48 -8.67 6.11 -914.34 -5.58 -14.25 16 7 C 0.02 0.30 7.11 86.22 0.61 0.91 16 8 C -0.08 -1.48 0.86 -52.06 -0.04 -1.53 16 9 C 0.03 0.56 6.12 86.24 0.53 1.09 16 10 C -0.08 -1.57 5.12 30.61 0.16 -1.42 16 11 C -0.11 -2.29 6.04 30.70 0.19 -2.10 16 12 C 0.05 1.24 4.85 86.32 0.42 1.66 16 13 N -0.54 -15.73 4.82 -896.81 -4.32 -20.04 16 14 C 0.07 2.42 5.29 86.31 0.46 2.87 16 15 C -0.09 -3.97 4.41 30.60 0.13 -3.84 16 16 C 0.03 1.39 4.97 29.85 0.15 1.54 16 17 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 18 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 19 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 20 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 21 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 C 0.07 1.68 4.58 86.16 0.39 2.07 16 26 H 0.03 0.35 8.14 -2.38 -0.02 0.33 16 27 H 0.08 0.87 8.12 -2.39 -0.02 0.85 16 28 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 29 H 0.07 0.86 6.47 -2.39 -0.02 0.85 16 30 H 0.08 0.81 8.12 -2.39 -0.02 0.79 16 31 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.07 1.23 7.46 -2.39 -0.02 1.22 16 33 H 0.04 0.65 8.12 -2.39 -0.02 0.63 16 34 H 0.08 1.24 6.55 -2.39 -0.02 1.22 16 35 H 0.04 0.77 7.70 -2.39 -0.02 0.75 16 36 H 0.10 1.46 8.09 -2.39 -0.02 1.44 16 37 H 0.07 1.19 7.75 -2.39 -0.02 1.17 16 38 H 0.06 1.39 7.69 -2.39 -0.02 1.37 16 39 H 0.08 1.75 7.65 -2.39 -0.02 1.73 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.42 8.01 -2.39 -0.02 1.40 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.47 7.69 -2.39 -0.02 1.45 16 44 H 0.07 2.19 5.69 -2.39 -0.01 2.17 16 45 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16 47 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.06 2.28 6.17 -2.39 -0.01 2.27 16 50 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 51 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 52 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 53 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 54 H 0.07 1.71 8.07 -2.39 -0.02 1.69 16 Total: -1.00 -64.08 405.68 -4.60 -68.68 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.81 Total: 14.04 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 6.94 Total: -24.09 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -14.38 Total: -105.48 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.08 -4.60 -68.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277952255.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.498 kcal (2) G-P(sol) polarization free energy of solvation -64.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds