Wall clock time and date at job start Fri Apr 10 2020 22:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46994 * 2 1 4 4 H 1.08998 * 109.47179 * 305.59241 * 3 2 1 5 5 C 1.53007 * 109.46754 * 185.59532 * 3 2 1 6 6 C 1.52997 * 109.47234 * 64.99999 * 5 3 2 7 7 C 1.52997 * 109.47288 * 184.99858 * 6 5 3 8 8 C 1.52998 * 109.47615 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46722 * 60.00054 * 8 7 6 10 10 C 1.53001 * 109.47491 * 300.00088 * 9 8 7 11 11 C 1.52997 * 109.47042 * 64.99916 * 6 5 3 12 12 C 1.50701 * 109.47475 * 65.59734 * 3 2 1 13 13 O 1.21287 * 119.99749 * 24.35137 * 12 3 2 14 14 N 1.34775 * 119.99875 * 204.35898 * 12 3 2 15 15 C 1.46507 * 119.99782 * 184.92668 * 14 12 3 16 16 C 1.50694 * 109.46935 * 89.99628 * 15 14 12 17 17 H 1.08006 * 120.00511 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99983 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99839 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00261 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47039 * 60.00274 * 20 18 16 22 22 H 1.48501 * 109.46939 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47076 * 300.00062 * 20 18 16 24 24 C 1.46495 * 120.00332 * 4.92183 * 14 12 3 25 25 C 1.52999 * 109.47101 * 114.38471 * 24 14 12 26 26 C 1.53000 * 109.47684 * 234.38414 * 24 14 12 27 27 H 1.09001 * 109.47367 * 184.91801 * 1 2 3 28 28 H 1.08997 * 109.47476 * 304.92742 * 1 2 3 29 29 H 1.09007 * 109.46765 * 64.92124 * 1 2 3 30 30 H 1.08995 * 109.47227 * 239.99967 * 2 1 3 31 31 H 1.09005 * 109.46824 * 120.00026 * 2 1 3 32 32 H 1.09002 * 109.47076 * 304.99322 * 5 3 2 33 33 H 1.09003 * 109.47048 * 184.99933 * 5 3 2 34 34 H 1.08999 * 109.46772 * 304.99974 * 6 5 3 35 35 H 1.09003 * 109.47038 * 59.99592 * 7 6 5 36 36 H 1.08999 * 109.47081 * 300.00289 * 7 6 5 37 37 H 1.08999 * 109.46765 * 300.00312 * 8 7 6 38 38 H 1.08992 * 109.47281 * 179.97438 * 8 7 6 39 39 H 1.08999 * 109.47724 * 60.00266 * 9 8 7 40 40 H 1.09004 * 109.47160 * 180.02562 * 9 8 7 41 41 H 1.08997 * 109.47821 * 180.02562 * 10 9 8 42 42 H 1.08999 * 109.47255 * 300.00513 * 10 9 8 43 43 H 1.09001 * 109.47275 * 299.99696 * 11 6 5 44 44 H 1.08999 * 109.47290 * 60.00375 * 11 6 5 45 45 H 1.09004 * 109.46937 * 209.99764 * 15 14 12 46 46 H 1.09000 * 109.46999 * 329.99550 * 15 14 12 47 47 H 0.96995 * 120.00230 * 179.97438 * 19 18 16 48 48 H 1.09001 * 109.46991 * 354.38666 * 24 14 12 49 49 H 1.08994 * 109.47447 * 65.07679 * 25 24 14 50 50 H 1.09005 * 109.47395 * 185.08048 * 25 24 14 51 51 H 1.09005 * 109.47051 * 305.07351 * 25 24 14 52 52 H 1.09002 * 109.46516 * 59.99593 * 26 24 14 53 53 H 1.08992 * 109.47372 * 179.97438 * 26 24 14 54 54 H 1.08996 * 109.46682 * 300.00334 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9844 -0.8357 5 6 3.5636 1.4447 -0.1407 6 6 3.9503 0.8787 -1.5084 7 6 5.4732 0.7646 -1.6011 8 6 5.8600 0.1979 -2.9687 9 6 5.3505 1.1303 -4.0696 10 6 3.8275 1.2444 -3.9770 11 6 3.4409 1.8115 -2.6090 12 6 1.6540 2.1118 1.2939 13 8 1.4456 1.4430 2.2840 14 7 1.5403 3.4536 1.3507 15 6 1.2714 4.1123 2.6314 16 6 2.5758 4.4464 3.3080 17 1 3.5116 4.1937 2.8316 18 6 2.5748 5.0755 4.5349 19 7 1.4353 5.3837 5.1148 20 14 4.1917 5.4903 5.3733 21 1 4.9807 6.4000 4.5044 22 1 3.9191 6.1590 6.6709 23 1 4.9605 4.2422 5.6109 24 6 1.6857 4.2533 0.1319 25 6 0.3527 4.9285 -0.1970 26 6 2.7590 5.3221 0.3481 27 1 -0.3634 -1.0239 0.0881 28 1 -0.3634 0.5883 0.8425 29 1 -0.3633 0.4356 -0.9309 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 4.0018 0.8288 0.6447 33 1 3.9352 2.4656 -0.0517 34 1 3.5038 -0.1079 -1.6328 35 1 5.8362 0.1001 -0.8170 36 1 5.9197 1.7511 -1.4767 37 1 5.4135 -0.7887 -3.0926 38 1 6.9449 0.1171 -3.0348 39 1 5.7969 2.1169 -3.9457 40 1 5.6256 0.7264 -5.0439 41 1 3.4645 1.9082 -4.7615 42 1 3.3811 0.2578 -4.1009 43 1 2.3559 1.8927 -2.5430 44 1 3.8874 2.7980 -2.4846 45 1 0.7073 5.0286 2.4572 46 1 0.6920 3.4445 3.2689 47 1 1.4344 5.8260 5.9781 48 1 1.9788 3.6060 -0.6946 49 1 0.1040 5.6432 0.5875 50 1 0.4350 5.4499 -1.1507 51 1 -0.4307 4.1734 -0.2623 52 1 3.7086 4.8410 0.5825 53 1 2.8674 5.9168 -0.5588 54 1 2.4658 5.9693 1.1746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292362649.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:23:35 Heat of formation + Delta-G solvation = -102.767309 kcal Electronic energy + Delta-G solvation = -28280.375810 eV Core-core repulsion = 24828.436043 eV Total energy + Delta-G solvation = -3451.939767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.34283 -39.50879 -37.65954 -36.16950 -34.85955 -32.82858 -32.38249 -31.52732 -30.20948 -28.79645 -27.90145 -25.70879 -24.72371 -23.41623 -23.28881 -22.43985 -21.42918 -20.34601 -19.18789 -18.57614 -18.44288 -16.91877 -16.37398 -16.22446 -15.88826 -15.50938 -15.31709 -14.97942 -14.86643 -14.78574 -14.57918 -14.31368 -14.08696 -13.97601 -13.56104 -13.40059 -13.35622 -13.16169 -12.92985 -12.90076 -12.82065 -12.64868 -12.54623 -12.46010 -12.24985 -12.14165 -12.06480 -11.97462 -11.88367 -11.77636 -11.55819 -11.46866 -11.35701 -11.16386 -10.87343 -10.70274 -10.61124 -10.28350 -9.36439 -8.19051 -6.31274 1.34313 1.38185 1.45126 1.90052 2.33294 2.48121 3.10258 3.58326 3.73736 3.86425 3.94822 3.98742 4.00733 4.16685 4.28252 4.31100 4.36651 4.41120 4.49552 4.54381 4.64916 4.67135 4.70143 4.75438 4.78098 4.83495 4.85741 4.87842 4.88747 4.99633 5.01142 5.04364 5.12672 5.13230 5.16801 5.21254 5.25767 5.28332 5.37616 5.39365 5.39952 5.43708 5.43849 5.45219 5.50662 5.58261 5.59930 5.65504 5.73433 5.93425 6.12517 6.75424 6.90383 7.32914 7.58332 8.88026 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.004343 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.635712 B = 6445.312756 C = 6969.619615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.095 4.095 4 H 0.114 0.886 5 C -0.098 4.098 6 C -0.075 4.075 7 C -0.116 4.116 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.115 4.115 11 C -0.118 4.118 12 C 0.501 3.499 13 O -0.600 6.600 14 N -0.597 5.597 15 C 0.266 3.734 16 C -0.523 4.523 17 H 0.053 0.947 18 C 0.006 3.994 19 N -0.931 5.931 20 Si 0.959 3.041 21 H -0.260 1.260 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.124 3.876 25 C -0.158 4.158 26 C -0.148 4.148 27 H 0.064 0.936 28 H 0.020 0.980 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.020 0.980 46 H -0.012 1.012 47 H 0.265 0.735 48 H 0.113 0.887 49 H 0.038 0.962 50 H 0.099 0.901 51 H 0.053 0.947 52 H 0.043 0.957 53 H 0.089 0.911 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.166 -6.965 -23.321 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.116 4.116 4 H 0.132 0.868 5 C -0.137 4.137 6 C -0.093 4.093 7 C -0.154 4.154 8 C -0.153 4.153 9 C -0.157 4.157 10 C -0.153 4.153 11 C -0.156 4.156 12 C 0.291 3.709 13 O -0.482 6.482 14 N -0.328 5.328 15 C 0.145 3.855 16 C -0.562 4.562 17 H 0.071 0.929 18 C -0.192 4.192 19 N -0.571 5.571 20 Si 0.784 3.216 21 H -0.185 1.185 22 H -0.206 1.206 23 H -0.205 1.205 24 C 0.022 3.978 25 C -0.215 4.215 26 C -0.206 4.206 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.038 0.962 46 H 0.006 0.994 47 H 0.073 0.927 48 H 0.130 0.870 49 H 0.057 0.943 50 H 0.117 0.883 51 H 0.072 0.928 52 H 0.062 0.938 53 H 0.107 0.893 54 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.973 -7.182 -22.653 24.279 hybrid contribution 0.478 0.476 1.735 1.862 sum 5.451 -6.706 -20.918 22.633 Atomic orbital electron populations 1.21763 0.95845 1.01916 1.01173 1.21439 0.96059 0.94025 1.02551 1.21486 0.98228 0.97769 0.94141 0.86794 1.21522 0.92134 1.01432 0.98569 1.21136 0.95868 0.99949 0.92353 1.21579 0.95184 1.00965 0.97673 1.21501 1.00589 0.99196 0.93990 1.21547 0.96047 0.99637 0.98489 1.21516 0.95747 1.01458 0.96543 1.21694 1.01049 0.98678 0.94153 1.21405 0.76244 0.82117 0.91179 1.90606 1.52783 1.64677 1.40099 1.48360 1.68808 1.05972 1.09620 1.18573 0.95335 0.91007 0.80630 1.21605 0.93035 1.37519 1.04015 0.92876 1.25799 0.99823 0.95884 0.97693 1.70055 1.27273 1.42517 1.17281 0.85593 0.79668 0.78325 0.78002 1.18451 1.20564 1.20534 1.21430 0.96449 0.93564 0.86369 1.22154 0.96247 1.00658 1.02489 1.22036 0.97810 0.98625 1.02106 0.91656 0.96062 0.90829 0.88039 0.93714 0.93551 0.92290 0.89996 0.92802 0.92599 0.91669 0.91923 0.92419 0.91394 0.91280 0.91622 0.91168 0.92028 0.96216 0.99373 0.92663 0.86980 0.94321 0.88271 0.92820 0.93828 0.89267 0.93965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.77 71.98 0.70 -3.29 16 2 C -0.10 -2.76 4.97 30.59 0.15 -2.61 16 3 C -0.10 -2.76 1.21 -11.54 -0.01 -2.77 16 4 H 0.11 2.67 4.43 -2.39 -0.01 2.66 16 5 C -0.10 -2.61 3.98 30.60 0.12 -2.49 16 6 C -0.07 -1.38 2.06 -10.80 -0.02 -1.40 16 7 C -0.12 -2.09 5.20 30.59 0.16 -1.93 16 8 C -0.12 -1.63 5.92 30.59 0.18 -1.45 16 9 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 10 C -0.12 -1.43 5.93 30.61 0.18 -1.25 16 11 C -0.12 -1.80 4.97 30.61 0.15 -1.65 16 12 C 0.50 21.42 5.97 87.66 0.52 21.94 16 13 O -0.60 -32.18 14.87 -3.05 -0.05 -32.23 16 14 N -0.60 -25.77 2.38 -802.14 -1.91 -27.68 16 15 C 0.27 14.65 4.48 85.63 0.38 15.04 16 16 C -0.52 -30.26 7.85 25.60 0.20 -30.06 16 17 H 0.05 3.04 7.52 -2.91 -0.02 3.02 16 18 C 0.01 0.37 5.46 84.65 0.46 0.83 16 19 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 20 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 24 C 0.12 3.93 2.99 44.99 0.13 4.06 16 25 C -0.16 -4.41 9.18 71.98 0.66 -3.75 16 26 C -0.15 -4.78 8.34 71.98 0.60 -4.18 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.02 0.72 6.80 -2.39 -0.02 0.70 16 29 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.10 1.97 6.23 -2.39 -0.01 1.95 16 31 H 0.04 1.46 7.66 -2.38 -0.02 1.44 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.68 7.94 -2.39 -0.02 1.66 16 34 H 0.08 1.40 6.24 -2.39 -0.01 1.39 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 1.00 6.46 -2.39 -0.02 0.99 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.02 1.12 6.81 -2.38 -0.02 1.10 16 46 H -0.01 -0.77 7.36 -2.39 -0.02 -0.79 16 47 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 48 H 0.11 2.77 5.13 -2.39 -0.01 2.76 16 49 H 0.04 1.28 7.08 -2.39 -0.02 1.27 16 50 H 0.10 1.96 8.14 -2.38 -0.02 1.95 16 51 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 52 H 0.04 1.49 7.96 -2.39 -0.02 1.47 16 53 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 54 H 0.04 1.67 6.94 -2.39 -0.02 1.66 16 Total: -1.00 -73.86 400.61 5.94 -67.91 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.83 Total: 17.69 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 4.76 Total: -16.28 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -1.63 Total: -84.88 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.05 Total: -32.23 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -73.86 5.94 -67.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292362649.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.856 kcal (2) G-P(sol) polarization free energy of solvation -73.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds