Wall clock time and date at job start Fri Apr 10 2020 22:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 C 1.53003 * 109.47258 * 180.02562 * 3 2 1 5 5 H 1.08994 * 110.05732 * 52.69168 * 4 3 2 6 6 C 1.54266 * 110.02903 * 291.27719 * 4 3 2 7 7 C 1.54890 * 104.19627 * 217.10491 * 6 4 3 8 8 C 1.54892 * 102.74745 * 37.94569 * 7 6 4 9 9 C 1.53877 * 110.03357 * 174.11096 * 4 3 2 10 10 H 1.08994 * 110.07389 * 238.58577 * 9 4 3 11 11 C 1.50704 * 110.02934 * 0.02562 * 9 4 3 12 12 O 1.21276 * 120.00238 * 79.83411 * 11 9 4 13 13 N 1.34771 * 119.99544 * 259.82912 * 11 9 4 14 14 C 1.46502 * 120.00136 * 184.64645 * 13 11 9 15 15 C 1.50704 * 109.47053 * 270.00182 * 14 13 11 16 16 H 1.07997 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99955 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00012 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99855 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47316 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47023 * 120.00835 * 19 17 15 22 22 H 1.48506 * 109.47078 * 240.00234 * 19 17 15 23 23 C 1.46507 * 120.00226 * 4.64761 * 13 11 9 24 24 C 1.52996 * 109.47153 * 92.72308 * 23 13 11 25 25 C 1.53000 * 109.47273 * 175.53285 * 24 23 13 26 26 C 1.52993 * 109.47295 * 64.99623 * 25 24 23 27 27 C 1.53003 * 109.47190 * 185.00292 * 25 24 23 28 28 H 1.09004 * 109.47600 * 300.00531 * 1 2 3 29 29 H 1.09002 * 109.46840 * 60.00545 * 1 2 3 30 30 H 1.09006 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47359 * 239.99512 * 2 1 3 32 32 H 1.09002 * 109.46840 * 119.99455 * 2 1 3 33 33 H 1.08999 * 109.47921 * 59.99376 * 3 2 1 34 34 H 1.09002 * 109.46741 * 299.99516 * 3 2 1 35 35 H 1.09003 * 110.48699 * 98.42542 * 6 4 3 36 36 H 1.09005 * 110.59990 * 335.83622 * 6 4 3 37 37 H 1.08997 * 110.75849 * 279.62912 * 7 6 4 38 38 H 1.09004 * 110.75876 * 156.25412 * 7 6 4 39 39 H 1.09003 * 110.48279 * 203.37796 * 8 7 6 40 40 H 1.08996 * 110.49102 * 80.73438 * 8 7 6 41 41 H 1.09004 * 109.47152 * 29.99833 * 14 13 11 42 42 H 1.08994 * 109.47309 * 149.99980 * 14 13 11 43 43 H 0.97001 * 120.00142 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.46827 * 332.72020 * 23 13 11 45 45 H 1.09000 * 109.47084 * 212.72020 * 23 13 11 46 46 H 1.09006 * 109.47072 * 295.53021 * 24 23 13 47 47 H 1.09002 * 109.46990 * 55.52672 * 24 23 13 48 48 H 1.09000 * 109.46563 * 304.99406 * 25 24 23 49 49 H 1.09008 * 109.47006 * 300.00269 * 26 25 24 50 50 H 1.09001 * 109.46968 * 60.00351 * 26 25 24 51 51 H 1.08991 * 109.47263 * 180.02562 * 26 25 24 52 52 H 1.08997 * 109.47147 * 59.99388 * 27 25 24 53 53 H 1.08997 * 109.46692 * 180.02562 * 27 25 24 54 54 H 1.09000 * 109.46187 * 299.99340 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9435 0.8220 -0.8152 6 6 4.0989 0.9163 1.3496 7 6 5.3543 1.7797 1.6283 8 6 4.9279 3.1780 1.1164 9 6 4.0971 2.8805 -0.1490 10 1 4.7262 2.9588 -1.0356 11 6 2.9436 3.8454 -0.2472 12 8 2.3611 4.1984 0.7562 13 7 2.5596 4.3162 -1.4503 14 6 1.5065 5.3309 -1.5377 15 6 0.1653 4.6539 -1.6559 16 1 0.1035 3.5757 -1.6645 17 6 -0.9830 5.4110 -1.7519 18 7 -0.9078 6.7239 -1.7408 19 14 -2.6454 4.5719 -1.8990 20 1 -2.4590 3.0987 -1.8885 21 1 -3.5039 4.9700 -0.7546 22 1 -3.2951 4.9800 -3.1705 23 6 3.1953 3.8133 -2.6707 24 6 2.3830 2.6402 -3.2226 25 6 2.9826 2.1867 -4.5552 26 6 4.3881 1.6303 -4.3190 27 6 2.0993 1.0980 -5.1678 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8898 32 1 1.8932 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9562 -0.8901 35 1 4.3701 -0.1364 1.2691 36 1 3.3560 1.0589 2.1344 37 1 6.2114 1.4077 1.0670 38 1 5.5735 1.8095 2.6956 39 1 5.8041 3.7759 0.8656 40 1 4.3178 3.6877 1.8622 41 1 1.5232 5.9501 -0.6407 42 1 1.6763 5.9562 -2.4141 43 1 -1.7156 7.2566 -1.8087 44 1 4.2072 3.4789 -2.4419 45 1 3.2351 4.6094 -3.4142 46 1 2.4095 1.8138 -2.5123 47 1 1.3505 2.9538 -3.3767 48 1 3.0377 3.0359 -5.2364 49 1 5.0174 2.4060 -3.8825 50 1 4.3329 0.7812 -3.6378 51 1 4.8154 1.3077 -5.2683 52 1 1.0980 1.4945 -5.3361 53 1 2.5268 0.7747 -6.1169 54 1 2.0442 0.2490 -4.4865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293066113.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:23:38 Heat of formation + Delta-G solvation = -97.806252 kcal Electronic energy + Delta-G solvation = -28875.257695 eV Core-core repulsion = 25423.533056 eV Total energy + Delta-G solvation = -3451.724639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.56890 -38.59432 -37.85236 -35.97724 -35.31316 -34.62468 -31.10817 -30.46901 -29.99183 -28.62868 -27.87710 -26.05936 -24.96911 -24.41067 -22.57720 -21.71910 -21.23641 -20.77149 -19.06133 -18.59953 -18.07380 -17.13180 -16.70935 -16.26655 -15.98072 -15.84962 -15.57034 -15.28759 -14.68229 -14.58032 -14.44955 -14.35082 -14.21737 -13.90934 -13.60070 -13.34568 -13.29798 -13.04362 -12.97764 -12.89893 -12.76643 -12.54246 -12.50300 -12.30443 -12.15539 -12.08625 -11.88211 -11.76830 -11.69335 -11.61928 -11.53601 -11.44585 -11.37295 -11.31011 -11.14685 -11.08570 -10.62992 -10.30283 -9.32831 -8.20767 -6.32075 1.30334 1.32924 1.44024 1.93722 2.31934 2.48101 3.08676 3.53380 3.71065 3.73683 3.92301 4.05570 4.08194 4.15732 4.22240 4.26550 4.35167 4.40781 4.48303 4.53357 4.64396 4.68322 4.71776 4.75721 4.79964 4.84962 4.90112 4.92269 4.95038 5.00011 5.00895 5.02272 5.07599 5.11669 5.14861 5.21611 5.23529 5.25005 5.28178 5.29470 5.34250 5.37524 5.45664 5.49120 5.53513 5.59427 5.60746 5.66747 5.72102 5.92113 6.10471 6.75533 6.89627 7.32754 7.60735 8.86613 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.009882 B = 0.006053 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.796105 B = 4624.702966 C = 5194.646189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.129 4.129 4 C -0.065 4.065 5 H 0.105 0.895 6 C -0.115 4.115 7 C -0.110 4.110 8 C -0.117 4.117 9 C -0.109 4.109 10 H 0.113 0.887 11 C 0.513 3.487 12 O -0.596 6.596 13 N -0.604 5.604 14 C 0.264 3.736 15 C -0.516 4.516 16 H 0.055 0.945 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.954 3.046 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.270 1.270 23 C 0.110 3.890 24 C -0.130 4.130 25 C -0.091 4.091 26 C -0.144 4.144 27 C -0.144 4.144 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.045 0.955 41 H -0.009 1.009 42 H 0.017 0.983 43 H 0.264 0.736 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.041 0.959 48 H 0.065 0.935 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.064 0.936 52 H 0.036 0.964 53 H 0.068 0.932 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.855 -16.598 -3.090 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C -0.166 4.166 4 C -0.084 4.084 5 H 0.123 0.877 6 C -0.152 4.152 7 C -0.148 4.148 8 C -0.155 4.155 9 C -0.130 4.130 10 H 0.131 0.869 11 C 0.303 3.697 12 O -0.478 6.478 13 N -0.334 5.334 14 C 0.142 3.858 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.192 4.192 18 N -0.572 5.572 19 Si 0.779 3.221 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.012 4.012 24 C -0.168 4.168 25 C -0.110 4.110 26 C -0.201 4.201 27 C -0.201 4.201 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.009 0.991 42 H 0.035 0.965 43 H 0.073 0.927 44 H 0.122 0.878 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.060 0.940 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.080 0.920 51 H 0.083 0.917 52 H 0.056 0.944 53 H 0.087 0.913 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.440 -16.233 -2.608 21.882 hybrid contribution -1.892 0.855 0.089 2.078 sum 12.548 -15.378 -2.519 20.008 Atomic orbital electron populations 1.21782 0.97258 1.01718 1.00418 1.21451 0.94749 0.95535 1.02904 1.21978 0.96019 0.97606 1.01032 1.21691 0.93924 0.92813 0.99975 0.87725 1.22446 0.97044 1.00417 0.95315 1.22454 0.97920 0.92888 1.01492 1.22383 0.98527 0.99263 0.95315 1.22246 0.94381 0.94637 1.01779 0.86880 1.21090 0.85207 0.81059 0.82374 1.90610 1.58299 1.61315 1.37541 1.48261 1.37700 1.40827 1.06622 1.18671 0.85623 0.86720 0.94789 1.21655 0.92027 0.93045 1.48778 0.92689 1.25761 1.02805 0.95387 0.95232 1.70055 1.29699 1.05542 1.51925 0.85564 0.79712 0.78958 0.77867 1.19102 1.21065 1.19551 1.21844 0.96918 0.96743 0.85744 1.22121 0.99405 0.97733 0.97576 1.21054 0.96391 0.98363 0.95186 1.21870 0.94689 1.01235 1.02286 1.21802 0.98904 0.98407 1.01016 0.94634 0.94824 0.90744 0.90403 0.90688 0.95123 0.92851 0.88901 0.93561 0.88739 0.90931 0.90145 0.93651 0.99079 0.96547 0.92713 0.87773 0.91493 0.91227 0.94049 0.91661 0.92004 0.91986 0.91681 0.94442 0.91276 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 9.91 71.98 0.71 -3.78 16 2 C -0.11 -2.80 5.80 30.59 0.18 -2.62 16 3 C -0.13 -4.22 3.07 30.59 0.09 -4.13 16 4 C -0.07 -1.62 2.63 -10.07 -0.03 -1.65 16 5 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 6 C -0.11 -2.43 5.57 31.67 0.18 -2.25 16 7 C -0.11 -2.09 6.91 31.89 0.22 -1.87 16 8 C -0.12 -3.10 6.32 31.67 0.20 -2.90 16 9 C -0.11 -3.14 2.83 -10.81 -0.03 -3.17 16 10 H 0.11 2.58 5.61 -2.39 -0.01 2.57 16 11 C 0.51 21.62 4.45 87.66 0.39 22.01 16 12 O -0.60 -31.74 14.42 -3.02 -0.04 -31.78 16 13 N -0.60 -26.03 2.25 -826.14 -1.86 -27.89 16 14 C 0.26 14.56 5.17 85.63 0.44 15.01 16 15 C -0.52 -30.10 8.64 25.60 0.22 -29.88 16 16 H 0.05 3.20 7.24 -2.91 -0.02 3.18 16 17 C 0.01 0.37 5.46 84.65 0.46 0.83 16 18 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 19 Si 0.95 46.51 29.54 68.60 2.03 48.53 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 23 C 0.11 3.48 5.02 86.38 0.43 3.92 16 24 C -0.13 -3.92 4.42 30.59 0.14 -3.79 16 25 C -0.09 -2.03 2.92 -10.79 -0.03 -2.06 16 26 C -0.14 -2.31 8.95 71.98 0.64 -1.67 16 27 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 28 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.66 7.54 -2.39 -0.02 1.64 16 33 H 0.03 1.27 6.86 -2.39 -0.02 1.25 16 34 H 0.05 2.06 4.54 -2.39 -0.01 2.04 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.20 7.75 -2.38 -0.02 1.18 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 40 H 0.04 1.56 7.00 -2.39 -0.02 1.54 16 41 H -0.01 -0.57 7.49 -2.38 -0.02 -0.59 16 42 H 0.02 0.94 7.92 -2.39 -0.02 0.92 16 43 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.10 2.50 4.17 -2.39 -0.01 2.49 16 45 H 0.07 2.15 7.93 -2.39 -0.02 2.13 16 46 H 0.07 2.03 5.65 -2.38 -0.01 2.02 16 47 H 0.04 1.61 6.86 -2.39 -0.02 1.59 16 48 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.06 0.92 6.67 -2.38 -0.02 0.90 16 50 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 54 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -74.90 401.72 6.13 -68.78 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.83 Total: 20.36 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 4.88 Total: -20.42 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -1.57 Total: -85.47 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.04 Total: -31.78 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -74.90 6.13 -68.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293066113.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.030 kcal (2) G-P(sol) polarization free energy of solvation -74.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds