Wall clock time and date at job start Fri Apr 10 2020 22:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47305 * 2 1 4 4 C 1.52999 * 109.46996 * 179.97438 * 3 2 1 5 5 H 1.08993 * 110.01799 * 54.30383 * 4 3 2 6 6 C 1.54264 * 110.07580 * 292.87704 * 4 3 2 7 7 C 1.54886 * 104.19828 * 217.08802 * 6 4 3 8 8 C 1.54886 * 102.74724 * 37.93888 * 7 6 4 9 9 C 1.53879 * 110.02798 * 175.68858 * 4 3 2 10 10 H 1.09004 * 110.03441 * 0.04961 * 9 4 3 11 11 C 1.50702 * 110.03271 * 238.61816 * 9 4 3 12 12 O 1.21287 * 119.99713 * 330.07479 * 11 9 4 13 13 N 1.34772 * 120.00319 * 150.07153 * 11 9 4 14 14 C 1.46502 * 119.99688 * 5.01910 * 13 11 9 15 15 C 1.50702 * 109.47310 * 84.36391 * 14 13 11 16 16 H 1.07999 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00082 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00151 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47074 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47180 * 120.00185 * 19 17 15 22 22 H 1.48493 * 109.47281 * 239.99937 * 19 17 15 23 23 C 1.46495 * 120.00295 * 185.01951 * 13 11 9 24 24 C 1.53000 * 109.47428 * 89.99909 * 23 13 11 25 25 C 1.53001 * 109.46950 * 180.02562 * 24 23 13 26 26 C 1.52996 * 109.47299 * 65.00294 * 25 24 23 27 27 C 1.53006 * 109.46870 * 185.00240 * 25 24 23 28 28 H 1.08998 * 109.47018 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47148 * 300.00361 * 1 2 3 30 30 H 1.08998 * 109.46830 * 60.00137 * 1 2 3 31 31 H 1.08996 * 109.47148 * 239.99639 * 2 1 3 32 32 H 1.09006 * 109.47073 * 119.99634 * 2 1 3 33 33 H 1.08997 * 109.46795 * 59.99827 * 3 2 1 34 34 H 1.09006 * 109.46756 * 299.99828 * 3 2 1 35 35 H 1.09002 * 110.48459 * 335.76975 * 6 4 3 36 36 H 1.08999 * 110.48099 * 98.40401 * 6 4 3 37 37 H 1.09004 * 110.75183 * 279.62677 * 7 6 4 38 38 H 1.08996 * 110.75698 * 156.25843 * 7 6 4 39 39 H 1.09004 * 110.48789 * 203.37879 * 8 7 6 40 40 H 1.09004 * 110.48676 * 80.74098 * 8 7 6 41 41 H 1.08997 * 109.47037 * 204.36444 * 14 13 11 42 42 H 1.09000 * 109.47075 * 324.36308 * 14 13 11 43 43 H 0.96998 * 120.00071 * 179.97438 * 18 17 15 44 44 H 1.09006 * 109.47122 * 210.00570 * 23 13 11 45 45 H 1.09000 * 109.47124 * 329.99855 * 23 13 11 46 46 H 1.08994 * 109.47158 * 300.00224 * 24 23 13 47 47 H 1.09003 * 109.46938 * 60.00408 * 24 23 13 48 48 H 1.08995 * 109.47336 * 304.99711 * 25 24 23 49 49 H 1.08995 * 109.47403 * 59.99457 * 26 25 24 50 50 H 1.08997 * 109.47415 * 180.02562 * 26 25 24 51 51 H 1.08999 * 109.46760 * 299.99846 * 26 25 24 52 52 H 1.08993 * 109.46973 * 60.00026 * 27 25 24 53 53 H 1.08997 * 109.46810 * 180.02562 * 27 25 24 54 54 H 1.09004 * 109.46527 * 299.99957 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9435 0.8448 -0.8308 6 6 4.0990 0.8793 1.3359 7 6 5.3544 1.7347 1.6382 8 6 4.9280 3.1465 1.1649 9 6 4.0972 2.8840 -0.1080 10 1 3.2630 3.5837 -0.1603 11 6 4.9672 3.0248 -1.3305 12 8 5.5972 2.0724 -1.7393 13 7 5.0453 4.2089 -1.9694 14 6 4.3730 5.3863 -1.4144 15 6 5.2617 6.0326 -0.3830 16 1 6.2301 5.6085 -0.1627 17 6 4.8383 7.1654 0.2792 18 7 3.6588 7.6816 0.0112 19 14 5.9401 7.9669 1.5571 20 1 7.2055 7.1982 1.6717 21 1 6.2438 9.3607 1.1446 22 1 5.2472 7.9792 2.8704 23 6 5.8022 4.3186 -3.2188 24 6 4.8769 4.0310 -4.4028 25 6 5.6677 4.1450 -5.7076 26 6 6.7360 3.0507 -5.7538 27 6 4.7177 3.9808 -6.8957 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8901 35 1 3.3551 1.0021 2.1231 36 1 4.3701 -0.1707 1.2263 37 1 6.2115 1.3782 1.0669 38 1 5.5736 1.7350 2.7059 39 1 5.8043 3.7511 0.9307 40 1 4.3180 3.6355 1.9245 41 1 4.1674 6.0979 -2.2141 42 1 3.4357 5.0833 -0.9478 43 1 3.3608 8.4783 0.4774 44 1 6.2076 5.3263 -3.3108 45 1 6.6196 3.5974 -3.2130 46 1 4.4716 3.0234 -4.3108 47 1 4.0596 4.7522 -4.4087 48 1 6.1467 5.1227 -5.7579 49 1 6.2570 2.0729 -5.7034 50 1 7.2997 3.1322 -6.6831 51 1 7.4127 3.1677 -4.9073 52 1 3.9567 4.7604 -6.8628 53 1 5.2812 4.0615 -7.8252 54 1 4.2387 3.0029 -6.8453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293066115.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:23:51 Heat of formation + Delta-G solvation = -103.095626 kcal Electronic energy + Delta-G solvation = -27700.249844 eV Core-core repulsion = 24248.295840 eV Total energy + Delta-G solvation = -3451.954004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.37230 -38.94586 -37.59749 -36.38936 -35.23495 -34.45828 -31.30515 -30.58409 -29.60909 -28.62478 -28.02712 -26.10697 -24.98152 -24.54208 -22.43531 -21.92288 -20.92674 -20.75594 -19.51967 -18.39112 -17.98418 -17.26443 -16.51923 -16.38725 -16.15725 -15.85588 -15.65811 -15.38173 -14.72306 -14.54434 -14.51585 -14.19100 -14.16272 -13.86253 -13.71868 -13.45702 -13.33796 -13.13105 -13.07718 -12.81127 -12.77669 -12.64282 -12.32088 -12.27560 -12.13627 -12.08724 -11.93708 -11.84224 -11.70562 -11.67627 -11.55789 -11.48518 -11.45897 -11.35295 -11.27052 -11.22279 -10.65213 -10.38080 -9.40170 -8.18873 -6.31617 1.38462 1.42377 1.52142 1.81500 2.31330 2.46422 3.11557 3.62932 3.67215 3.77564 3.91694 3.95519 4.05808 4.12026 4.18809 4.24702 4.35670 4.40909 4.53984 4.58622 4.62078 4.66740 4.69653 4.74931 4.75867 4.79681 4.80788 4.83121 4.92203 4.93977 5.00452 5.01003 5.03629 5.07895 5.10013 5.13242 5.14926 5.20345 5.22668 5.27925 5.31130 5.33537 5.43675 5.45373 5.47967 5.48799 5.50944 5.63482 5.68643 5.90296 6.08772 6.59214 6.84776 7.34357 7.45949 8.87179 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.006871 B = 0.006393 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4073.982591 B = 4379.005785 C = 7052.440455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.109 4.109 4 C -0.076 4.076 5 H 0.064 0.936 6 C -0.104 4.104 7 C -0.121 4.121 8 C -0.097 4.097 9 C -0.102 4.102 10 H 0.082 0.918 11 C 0.521 3.479 12 O -0.593 6.593 13 N -0.602 5.602 14 C 0.255 3.745 15 C -0.531 4.531 16 H 0.049 0.951 17 C 0.026 3.974 18 N -0.920 5.920 19 Si 0.949 3.051 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.275 1.275 23 C 0.115 3.885 24 C -0.115 4.115 25 C -0.091 4.091 26 C -0.143 4.143 27 C -0.141 4.141 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.018 0.982 42 H 0.027 0.973 43 H 0.267 0.733 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.047 0.953 47 H 0.055 0.945 48 H 0.074 0.926 49 H 0.047 0.953 50 H 0.071 0.929 51 H 0.045 0.955 52 H 0.054 0.946 53 H 0.070 0.930 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.169 -11.081 -3.140 11.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.146 4.146 4 C -0.095 4.095 5 H 0.083 0.917 6 C -0.141 4.141 7 C -0.158 4.158 8 C -0.135 4.135 9 C -0.123 4.123 10 H 0.100 0.900 11 C 0.310 3.690 12 O -0.476 6.476 13 N -0.332 5.332 14 C 0.134 3.866 15 C -0.570 4.570 16 H 0.067 0.933 17 C -0.174 4.174 18 N -0.559 5.559 19 Si 0.775 3.225 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.201 1.201 23 C -0.008 4.008 24 C -0.153 4.153 25 C -0.110 4.110 26 C -0.201 4.201 27 C -0.198 4.198 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.066 0.934 50 H 0.090 0.910 51 H 0.064 0.936 52 H 0.073 0.927 53 H 0.089 0.911 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.972 -11.387 -3.324 12.026 hybrid contribution 0.521 1.167 0.511 1.376 sum -1.452 -10.220 -2.813 10.699 Atomic orbital electron populations 1.21767 0.95170 1.02073 1.01773 1.21496 0.96282 0.95575 1.02232 1.21703 0.93403 0.97919 1.01584 1.21738 0.95665 0.92804 0.99308 0.91727 1.22359 0.96731 0.99097 0.95900 1.22508 0.98047 0.94159 1.01109 1.22125 0.98880 0.97601 0.94937 1.21922 0.97891 0.99262 0.93187 0.90009 1.20850 0.81809 0.81713 0.84580 1.90522 1.48098 1.39868 1.69092 1.48277 1.51183 1.10139 1.23575 1.19069 0.92380 0.81950 0.93207 1.21570 1.02841 1.10824 1.21737 0.93277 1.25539 0.96166 0.97123 0.98599 1.70011 1.19945 1.22749 1.43242 0.85641 0.79199 0.78339 0.79363 1.19700 1.20561 1.20084 1.21469 0.94655 1.01461 0.83188 1.21875 0.98374 1.00739 0.94344 1.21055 0.96419 0.99867 0.93690 1.21836 0.98307 0.98076 1.01833 1.21786 0.99040 1.01630 0.97330 0.91699 0.92427 0.93335 0.92706 0.90851 0.91393 0.93557 0.89944 0.90695 0.93111 0.89778 0.93481 0.90752 0.96367 0.95543 0.92401 0.91273 0.91336 0.93404 0.92622 0.90754 0.93389 0.91017 0.93635 0.92736 0.91086 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.91 71.98 0.71 -2.12 16 2 C -0.12 -2.57 5.78 30.60 0.18 -2.39 16 3 C -0.11 -2.92 4.34 30.60 0.13 -2.79 16 4 C -0.08 -2.40 2.45 -10.07 -0.02 -2.42 16 5 H 0.06 2.29 6.82 -2.39 -0.02 2.28 16 6 C -0.10 -2.73 5.50 31.67 0.17 -2.56 16 7 C -0.12 -3.65 6.91 31.88 0.22 -3.43 16 8 C -0.10 -3.60 5.97 31.67 0.19 -3.41 16 9 C -0.10 -3.88 2.33 -10.82 -0.03 -3.90 16 10 H 0.08 3.34 5.52 -2.38 -0.01 3.33 16 11 C 0.52 22.60 6.52 87.66 0.57 23.17 16 12 O -0.59 -27.47 15.27 -3.05 -0.05 -27.52 16 13 N -0.60 -26.46 2.47 -826.15 -2.04 -28.50 16 14 C 0.25 12.41 4.97 85.63 0.43 12.83 16 15 C -0.53 -27.62 8.30 25.60 0.21 -27.41 16 16 H 0.05 2.64 7.26 -2.91 -0.02 2.62 16 17 C 0.03 1.36 5.46 84.65 0.46 1.82 16 18 N -0.92 -50.49 13.29 21.45 0.28 -50.21 16 19 Si 0.95 41.88 29.54 68.60 2.03 43.91 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 C 0.12 4.45 5.18 86.38 0.45 4.89 16 24 C -0.11 -3.78 5.01 30.59 0.15 -3.62 16 25 C -0.09 -2.37 2.92 -10.79 -0.03 -2.40 16 26 C -0.14 -3.56 8.95 71.98 0.64 -2.92 16 27 C -0.14 -3.05 9.19 71.98 0.66 -2.39 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.43 7.49 -2.38 -0.02 1.41 16 33 H 0.07 1.76 8.02 -2.39 -0.02 1.74 16 34 H 0.05 1.35 8.14 -2.38 -0.02 1.34 16 35 H 0.08 1.88 7.77 -2.39 -0.02 1.86 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.05 2.01 6.59 -2.39 -0.02 1.99 16 40 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 41 H 0.02 0.94 8.03 -2.39 -0.02 0.92 16 42 H 0.03 1.35 5.95 -2.39 -0.01 1.34 16 43 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.07 2.67 8.07 -2.38 -0.02 2.66 16 45 H 0.07 2.71 5.78 -2.39 -0.01 2.70 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.04 1.24 6.56 -2.39 -0.02 1.22 16 52 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 53 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 54 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -58.93 412.17 6.14 -52.79 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.82 Total: 28.58 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 5.10 Total: -19.05 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -1.76 Total: -78.71 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.05 Total: -27.52 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -58.93 6.14 -52.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293066115.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.308 kcal (2) G-P(sol) polarization free energy of solvation -58.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds