Wall clock time and date at job start Fri Apr 10 2020 22:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47658 * 2 1 4 4 C 1.52997 * 109.47652 * 172.18130 * 3 2 1 5 5 C 1.53000 * 109.47741 * 185.00052 * 4 3 2 6 6 C 1.53005 * 109.47349 * 292.18525 * 3 2 1 7 7 N 1.46501 * 109.46436 * 294.00429 * 6 3 2 8 8 C 1.46498 * 120.00157 * 275.42460 * 7 6 3 9 9 C 1.50701 * 109.47236 * 264.30305 * 8 7 6 10 10 H 1.08006 * 119.99777 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00320 * 180.02562 * 9 8 7 12 12 N 1.31512 * 119.99930 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00398 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47206 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47335 * 119.99612 * 13 11 9 16 16 H 1.48503 * 109.47489 * 240.00161 * 13 11 9 17 17 C 1.34782 * 119.99669 * 95.43391 * 7 6 3 18 18 O 1.21287 * 119.99629 * 185.60031 * 17 7 6 19 19 C 1.50701 * 119.99887 * 5.59358 * 17 7 6 20 20 H 1.08992 * 115.56268 * 24.96696 * 19 17 7 21 21 C 1.53071 * 117.49246 * 239.24741 * 19 17 7 22 22 C 1.53001 * 59.98604 * 252.51965 * 21 19 17 23 23 H 1.08996 * 117.50040 * 107.50269 * 22 21 19 24 24 C 1.53005 * 117.50038 * 252.50240 * 22 21 19 25 25 C 1.53003 * 109.46858 * 243.74566 * 24 22 21 26 26 C 1.52999 * 109.46913 * 174.99491 * 25 24 22 27 27 C 1.52996 * 109.47212 * 294.99563 * 25 24 22 28 28 H 1.08995 * 109.47274 * 182.65600 * 1 2 3 29 29 H 1.08994 * 109.46970 * 302.66205 * 1 2 3 30 30 H 1.09006 * 109.46614 * 62.65731 * 1 2 3 31 31 H 1.09003 * 109.47190 * 239.99991 * 2 1 3 32 32 H 1.08997 * 109.47123 * 120.00545 * 2 1 3 33 33 H 1.09003 * 109.46795 * 52.18007 * 3 2 1 34 34 H 1.09003 * 109.47025 * 305.00154 * 4 3 2 35 35 H 1.09005 * 109.46994 * 65.00097 * 4 3 2 36 36 H 1.08991 * 109.47175 * 179.97438 * 5 4 3 37 37 H 1.08994 * 109.46786 * 300.00324 * 5 4 3 38 38 H 1.09005 * 109.46840 * 59.99951 * 5 4 3 39 39 H 1.09003 * 109.47079 * 174.00800 * 6 3 2 40 40 H 1.08998 * 109.46913 * 54.00376 * 6 3 2 41 41 H 1.08991 * 109.46935 * 24.30379 * 8 7 6 42 42 H 1.09003 * 109.47188 * 144.30792 * 8 7 6 43 43 H 0.96998 * 120.00333 * 180.02562 * 12 11 9 44 44 H 1.08999 * 117.50950 * 145.04217 * 21 19 17 45 45 H 1.09003 * 117.49526 * 0.02562 * 21 19 17 46 46 H 1.08992 * 109.47073 * 123.74210 * 24 22 21 47 47 H 1.08999 * 109.46627 * 3.74239 * 24 22 21 48 48 H 1.09004 * 109.47120 * 54.99997 * 25 24 22 49 49 H 1.09004 * 109.46815 * 60.00319 * 26 25 24 50 50 H 1.08999 * 109.47118 * 179.97438 * 26 25 24 51 51 H 1.08999 * 109.47592 * 300.00405 * 26 25 24 52 52 H 1.08998 * 109.46799 * 180.02562 * 27 25 24 53 53 H 1.08996 * 109.47099 * 300.00273 * 27 25 24 54 54 H 1.09004 * 109.46971 * 60.00541 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5574 1.4468 0.1962 5 6 4.0514 2.8895 0.3210 6 6 1.6966 2.1049 -1.3357 7 7 2.4453 1.4508 -2.4118 8 6 3.8180 1.8682 -2.7078 9 6 3.8067 2.8705 -3.8332 10 1 2.8705 3.1666 -4.2832 11 6 4.9913 3.4087 -4.2890 12 7 6.1313 3.0471 -3.7420 13 14 4.9773 4.6516 -5.6834 14 1 3.5783 4.8873 -6.1223 15 1 5.5711 5.9291 -5.2138 16 1 5.7712 4.1261 -6.8231 17 6 1.8710 0.4651 -3.1296 18 8 2.5220 -0.1452 -3.9511 19 6 0.4200 0.1213 -2.9114 20 1 -0.1987 0.9245 -2.5115 21 6 0.0904 -1.3088 -2.4764 22 6 -0.2324 -0.8481 -3.8992 23 1 0.3876 -1.2367 -4.7070 24 6 -1.7035 -0.6156 -4.2498 25 6 -2.1316 -1.6055 -5.3351 26 6 -3.6318 -1.4577 -5.5971 27 6 -1.3581 -1.3163 -6.6230 28 1 -0.3633 -1.0265 0.0476 29 1 -0.3633 0.5546 0.8651 30 1 -0.3633 0.4721 -0.9129 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5671 1.9950 0.8118 34 1 3.8080 0.8972 1.1036 35 1 4.0359 0.9718 -0.6603 36 1 5.1323 2.8926 0.4613 37 1 3.8008 3.4391 -0.5862 38 1 3.5729 3.3646 1.1775 39 1 1.9640 3.1609 -1.2969 40 1 0.6277 2.0074 -1.5254 41 1 4.2587 2.3229 -1.8207 42 1 4.4067 0.9991 -3.0014 43 1 6.9648 3.4259 -4.0624 44 1 -0.7452 -1.4464 -1.7901 45 1 0.9232 -2.0003 -2.3477 46 1 -1.8333 0.4029 -4.6153 47 1 -2.3166 -0.7635 -3.3608 48 1 -1.9191 -2.6221 -5.0040 49 1 -3.8443 -0.4411 -5.9282 50 1 -3.9367 -2.1626 -6.3705 51 1 -4.1829 -1.6636 -4.6795 52 1 -1.6634 -2.0213 -7.3962 53 1 -1.5706 -0.2998 -6.9541 54 1 -0.2893 -1.4217 -6.4363 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464926373.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:21:20 Heat of formation + Delta-G solvation = -52.110283 kcal Electronic energy + Delta-G solvation = -28049.306905 eV Core-core repulsion = 24599.563792 eV Total energy + Delta-G solvation = -3449.743114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.47145 -38.93681 -38.14818 -36.15544 -35.30637 -34.27208 -33.01536 -30.08782 -28.75017 -27.99802 -27.79353 -26.19369 -25.86123 -23.49879 -22.79570 -22.07132 -21.12955 -20.67195 -19.33395 -18.78348 -17.96297 -17.12403 -16.73441 -16.33422 -16.05939 -15.64015 -15.43662 -15.27426 -14.91356 -14.63814 -14.55101 -14.15855 -13.87508 -13.81406 -13.64939 -13.42387 -13.27627 -13.04779 -12.97568 -12.94295 -12.75089 -12.61333 -12.42005 -12.36966 -12.25716 -12.16157 -11.92548 -11.77857 -11.66341 -11.57226 -11.46967 -11.35613 -11.29006 -11.13422 -10.94496 -10.70693 -10.58843 -10.42482 -9.29968 -8.20276 -6.33798 1.32293 1.34973 1.46214 1.75439 2.32285 2.47905 3.01697 3.08353 3.60617 3.79236 3.87439 3.93543 4.01967 4.04747 4.12683 4.18737 4.24501 4.32590 4.48418 4.52213 4.61498 4.63007 4.70844 4.74197 4.78760 4.83593 4.84741 4.87391 4.93319 4.97605 4.99195 5.03849 5.09990 5.15134 5.17377 5.19090 5.19818 5.26472 5.28576 5.31451 5.39142 5.40851 5.46023 5.53834 5.55219 5.57159 5.58605 5.61529 5.70666 5.95544 6.14441 6.73771 6.90402 7.31102 7.58890 8.85778 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.010596 B = 0.005026 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.860068 B = 5570.004730 C = 7647.535545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.094 4.094 4 C -0.124 4.124 5 C -0.148 4.148 6 C 0.106 3.894 7 N -0.589 5.589 8 C 0.251 3.749 9 C -0.540 4.540 10 H 0.045 0.955 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.960 3.040 14 H -0.270 1.270 15 H -0.267 1.267 16 H -0.283 1.283 17 C 0.525 3.475 18 O -0.609 6.609 19 C -0.189 4.189 20 H 0.146 0.854 21 C -0.121 4.121 22 C -0.129 4.129 23 H 0.082 0.918 24 C -0.075 4.075 25 C -0.091 4.091 26 C -0.142 4.142 27 C -0.153 4.153 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.033 0.967 36 H 0.037 0.963 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.064 0.936 42 H -0.022 1.022 43 H 0.265 0.735 44 H 0.143 0.857 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.091 0.909 48 H 0.072 0.928 49 H 0.053 0.947 50 H 0.057 0.943 51 H 0.067 0.933 52 H 0.060 0.940 53 H 0.049 0.951 54 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.115 -5.947 8.313 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.113 4.113 4 C -0.161 4.161 5 C -0.205 4.205 6 C -0.017 4.017 7 N -0.318 5.318 8 C 0.130 3.870 9 C -0.579 4.579 10 H 0.063 0.937 11 C -0.188 4.188 12 N -0.566 5.566 13 Si 0.785 3.215 14 H -0.195 1.195 15 H -0.192 1.192 16 H -0.210 1.210 17 C 0.315 3.685 18 O -0.492 6.492 19 C -0.209 4.209 20 H 0.163 0.837 21 C -0.158 4.158 22 C -0.148 4.148 23 H 0.100 0.900 24 C -0.113 4.113 25 C -0.110 4.110 26 C -0.199 4.199 27 C -0.210 4.210 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.082 0.918 42 H -0.004 1.004 43 H 0.074 0.926 44 H 0.161 0.839 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.110 0.890 48 H 0.091 0.909 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.086 0.914 52 H 0.079 0.921 53 H 0.068 0.932 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -19.572 -6.190 7.907 21.997 hybrid contribution 1.449 0.679 -1.235 2.021 sum -18.123 -5.511 6.672 20.083 Atomic orbital electron populations 1.22177 0.93812 1.02580 1.02738 1.21553 0.97739 0.95433 1.00912 1.21618 0.95077 0.97488 0.97125 1.21660 0.96523 0.97142 1.00782 1.21809 1.00257 0.96834 1.01641 1.21896 0.96780 0.96825 0.86177 1.48013 1.15447 1.34996 1.33340 1.19119 0.78671 0.92646 0.96569 1.21791 0.92739 1.24406 1.18951 0.93692 1.25752 0.94927 0.98890 0.99272 1.70050 0.98183 1.44863 1.43477 0.85482 0.78158 0.78927 0.78939 1.19455 1.19191 1.20951 1.20373 0.89210 0.79196 0.79753 1.90608 1.66471 1.54070 1.38035 1.22491 0.92208 0.96890 1.09329 0.83718 1.23326 1.03317 0.91973 0.97231 1.22585 0.97647 1.00981 0.93586 0.89975 1.21260 0.90979 0.99386 0.99626 1.21053 0.95949 0.99494 0.94477 1.21802 0.94103 1.01868 1.02171 1.21923 0.99564 1.01459 0.98070 0.91470 0.91567 0.91607 0.94604 0.91780 0.87597 0.91260 0.94811 0.94353 0.93775 0.90462 0.91358 0.88194 0.91812 1.00424 0.92581 0.83892 0.90574 0.91936 0.89018 0.90943 0.92806 0.92366 0.91401 0.92053 0.93168 0.94559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 7.42 71.98 0.53 -2.01 16 2 C -0.12 -2.81 4.81 30.59 0.15 -2.66 16 3 C -0.09 -2.45 2.19 -10.80 -0.02 -2.47 16 4 C -0.12 -3.95 4.85 30.59 0.15 -3.81 16 5 C -0.15 -4.81 8.66 71.98 0.62 -4.19 16 6 C 0.11 3.33 4.86 86.38 0.42 3.75 16 7 N -0.59 -25.56 2.00 -826.14 -1.65 -27.21 16 8 C 0.25 13.76 3.61 85.63 0.31 14.07 16 9 C -0.54 -32.17 9.34 25.60 0.24 -31.94 16 10 H 0.04 2.70 7.81 -2.91 -0.02 2.67 16 11 C 0.01 0.61 5.46 84.65 0.46 1.08 16 12 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 13 Si 0.96 46.40 29.54 68.60 2.03 48.43 16 14 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 16 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 17 C 0.52 23.00 5.98 87.66 0.52 23.52 16 18 O -0.61 -33.76 15.94 -3.05 -0.05 -33.80 16 19 C -0.19 -5.56 3.11 -11.51 -0.04 -5.60 16 20 H 0.15 3.45 4.92 -2.39 -0.01 3.43 16 21 C -0.12 -2.83 6.82 30.62 0.21 -2.63 16 22 C -0.13 -3.48 5.03 -10.79 -0.05 -3.53 16 23 H 0.08 2.84 5.94 -2.39 -0.01 2.82 16 24 C -0.08 -1.45 4.96 30.60 0.15 -1.30 16 25 C -0.09 -1.66 2.92 -10.79 -0.03 -1.70 16 26 C -0.14 -1.98 9.19 71.98 0.66 -1.32 16 27 C -0.15 -3.41 9.01 71.98 0.65 -2.76 16 28 H 0.07 0.92 6.95 -2.39 -0.02 0.90 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.08 3.40 -2.38 -0.01 1.07 16 31 H 0.04 1.09 4.89 -2.39 -0.01 1.08 16 32 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 33 H 0.11 2.11 8.13 -2.39 -0.02 2.09 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.03 1.39 5.41 -2.38 -0.01 1.38 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.04 1.68 5.25 -2.39 -0.01 1.67 16 38 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.07 2.28 6.84 -2.39 -0.02 2.26 16 40 H 0.10 2.51 4.51 -2.39 -0.01 2.50 16 41 H 0.06 3.39 3.51 -2.39 -0.01 3.39 16 42 H -0.02 -1.46 7.53 -2.39 -0.02 -1.48 16 43 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.14 2.17 6.23 -2.39 -0.01 2.15 16 45 H 0.08 2.12 8.04 -2.39 -0.02 2.10 16 46 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 47 H 0.09 1.27 7.88 -2.39 -0.02 1.25 16 48 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 49 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 50 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 54 H 0.04 0.99 6.41 -2.39 -0.02 0.97 16 Total: -1.00 -76.43 389.93 6.41 -70.02 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.87 Total: 22.83 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 4.93 Total: -23.49 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -1.36 Total: -83.98 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.05 Total: -33.80 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -76.43 6.41 -70.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464926373.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.911 kcal (2) G-P(sol) polarization free energy of solvation -76.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds