Wall clock time and date at job start Fri Apr 10 2020 22:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34804 * 116.99843 * 2 1 4 4 O 1.21552 * 119.99739 * 359.97438 * 3 2 1 5 5 C 1.47113 * 119.99793 * 179.97438 * 3 2 1 6 6 C 1.35288 * 123.15268 * 180.02562 * 5 3 2 7 7 S 1.70947 * 108.81776 * 179.97438 * 6 5 3 8 8 C 1.70758 * 91.13780 * 0.02562 * 7 6 5 9 9 C 1.50701 * 124.70870 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.47468 * 269.97493 * 9 8 7 11 11 C 1.46846 * 110.99664 * 66.04503 * 10 9 8 12 12 C 1.53038 * 109.52206 * 174.16500 * 11 10 9 13 13 C 1.53123 * 109.28060 * 59.17574 * 12 11 10 14 14 C 1.53119 * 109.15817 * 302.34793 * 13 12 11 15 15 H 1.09003 * 109.50720 * 297.67109 * 14 13 12 16 16 C 1.50703 * 109.49971 * 177.59453 * 14 13 12 17 17 H 1.08001 * 119.99766 * 239.99865 * 16 14 13 18 18 C 1.37879 * 120.00005 * 60.00065 * 16 14 13 19 19 N 1.31515 * 119.99782 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99912 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47136 * 90.00030 * 20 18 16 22 22 H 1.48503 * 109.47177 * 209.99977 * 20 18 16 23 23 H 1.48507 * 109.47287 * 330.00052 * 20 18 16 24 24 C 1.46842 * 110.99821 * 301.83422 * 10 9 8 25 25 N 1.28625 * 110.58536 * 359.72443 * 8 7 6 26 26 H 1.09005 * 109.47352 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47465 * 300.00062 * 1 2 3 28 28 H 1.08999 * 109.47008 * 60.00072 * 1 2 3 29 29 H 1.07993 * 125.59454 * 0.03349 * 6 5 3 30 30 H 1.09002 * 109.46970 * 29.97559 * 9 8 7 31 31 H 1.09000 * 109.47265 * 149.97153 * 9 8 7 32 32 H 1.09004 * 109.46357 * 294.17411 * 11 10 9 33 33 H 1.08996 * 109.46377 * 54.15029 * 11 10 9 34 34 H 1.09000 * 109.50740 * 179.11935 * 12 11 10 35 35 H 1.09007 * 109.50313 * 299.23464 * 12 11 10 36 36 H 1.08999 * 109.52185 * 62.25140 * 13 12 11 37 37 H 1.09002 * 109.52208 * 182.37832 * 13 12 11 38 38 H 0.97004 * 119.99468 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.46713 * 305.85318 * 24 10 9 40 40 H 1.09007 * 109.46310 * 65.82124 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2011 0.0000 4 8 1.4018 2.2205 -0.0005 5 6 3.5330 1.2781 0.0006 6 6 4.2126 2.4479 0.0011 7 16 5.8887 2.1119 0.0024 8 6 5.5864 0.4313 0.0014 9 6 6.6538 -0.6326 0.0012 10 7 7.0008 -0.9780 -1.3838 11 6 7.6379 0.1562 -2.0651 12 6 8.1154 -0.2826 -3.4513 13 6 6.9177 -0.7829 -4.2637 14 6 6.2433 -1.9319 -3.5090 15 1 6.9437 -2.7609 -3.4066 16 6 5.0284 -2.3912 -4.2733 17 1 4.0520 -2.3442 -3.8142 18 6 5.1635 -2.8715 -5.5587 19 7 6.3525 -2.9282 -6.1179 20 14 3.6577 -3.4415 -6.5058 21 1 3.0843 -2.2973 -7.2590 22 1 4.0473 -4.5142 -7.4559 23 1 2.6443 -3.9661 -5.5553 24 6 5.8201 -1.4453 -2.1212 25 7 4.3213 0.1994 0.0060 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.7690 3.4326 0.0017 30 1 7.5393 -0.2588 0.5152 31 1 6.2828 -1.5195 0.5149 32 1 6.9182 0.9682 -2.1692 33 1 8.4904 0.4995 -1.4792 34 1 8.5742 0.5634 -3.9629 35 1 8.8456 -1.0853 -3.3474 36 1 6.2053 0.0305 -4.4009 37 1 7.2595 -1.1359 -5.2367 38 1 6.4475 -3.2665 -7.0220 39 1 5.3522 -2.2650 -1.5760 40 1 5.1088 -0.6258 -2.2250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:25:12 Heat of formation + Delta-G solvation = -38.335073 kcal Electronic energy + Delta-G solvation = -23871.077482 eV Core-core repulsion = 20391.759383 eV Total energy + Delta-G solvation = -3479.318099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.114 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.81219 -39.54594 -38.08204 -36.49752 -34.10865 -32.20029 -30.43404 -29.90811 -28.23906 -27.09755 -25.17040 -24.96399 -22.77568 -21.67341 -21.04840 -19.86305 -19.11135 -18.45188 -17.02405 -16.58293 -16.54981 -16.37592 -15.36185 -15.16505 -14.64681 -14.43399 -14.16324 -13.77241 -13.62581 -13.32257 -13.04827 -12.62176 -12.32698 -12.30290 -12.18377 -12.08662 -11.77220 -11.39394 -10.93333 -10.85613 -10.84751 -10.70485 -10.64315 -10.17518 -9.93735 -9.88362 -9.67941 -9.46645 -9.18091 -8.95400 -8.70641 -8.29762 -7.91996 -5.95553 -4.00707 0.31083 1.09000 1.44694 1.67626 2.71009 3.06291 3.32607 3.39216 3.43442 3.91397 4.35020 4.52609 4.74270 4.96719 5.02356 5.04986 5.11150 5.25234 5.34629 5.43250 5.56775 5.63450 5.75664 5.84062 5.97542 6.19128 6.19497 6.43063 6.51046 6.64779 6.72717 6.97157 7.15843 7.29474 7.32699 7.51398 7.67170 7.72468 7.79104 8.08078 8.17731 8.50257 9.03183 9.63443 11.10595 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.005372 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.205052 B = 5210.567857 C = 7091.654568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.331 6.331 3 C 0.550 3.450 4 O -0.507 6.507 5 C 0.024 3.976 6 C -0.228 4.228 7 S 0.220 5.780 8 C 0.007 3.993 9 C 0.126 3.874 10 N -0.516 5.516 11 C 0.050 3.950 12 C -0.116 4.116 13 C -0.112 4.112 14 C 0.055 3.945 15 H 0.035 0.965 16 C -0.511 4.511 17 H 0.054 0.946 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.068 3.932 25 N -0.411 5.411 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.189 0.811 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.026 0.974 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.092 0.908 38 H 0.259 0.741 39 H 0.065 0.935 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.988 9.888 13.962 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.246 6.246 3 C 0.392 3.608 4 O -0.396 6.396 5 C -0.111 4.111 6 C -0.371 4.371 7 S 0.478 5.522 8 C -0.276 4.276 9 C -0.006 4.006 10 N -0.238 5.238 11 C -0.078 4.078 12 C -0.154 4.154 13 C -0.150 4.150 14 C 0.036 3.964 15 H 0.053 0.947 16 C -0.550 4.550 17 H 0.072 0.928 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.716 3.284 21 H -0.209 1.209 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.058 4.058 25 N -0.126 5.126 26 H 0.123 0.877 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.206 0.794 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.078 9.743 13.803 16.895 hybrid contribution -2.787 0.513 -0.717 2.923 sum -2.865 10.256 13.086 16.871 Atomic orbital electron populations 1.23345 0.76000 1.04104 1.02420 1.86731 1.23246 1.31368 1.83274 1.19870 0.86829 0.81802 0.72283 1.90857 1.65839 1.36161 1.46723 1.19286 0.92533 0.88306 1.10928 1.26610 0.99343 1.04021 1.07082 1.82922 1.02008 1.04144 1.63095 1.28707 0.96179 0.98810 1.03881 1.21291 0.91736 0.93771 0.93844 1.62517 1.28748 1.32232 1.00316 1.22259 0.97308 0.91489 0.96717 1.21667 1.00152 0.99904 0.93658 1.21675 0.94165 0.97681 1.01482 1.18686 0.95885 0.93913 0.87939 0.94680 1.21142 0.93460 1.41583 0.98822 0.92822 1.24911 0.95663 0.95640 0.97562 1.69886 1.21675 1.46742 1.14540 0.86653 0.83438 0.78401 0.79871 1.20875 1.21207 1.19897 1.22375 0.88466 0.98249 0.96734 1.67057 1.02413 1.30435 1.12728 0.87673 0.91924 0.91695 0.79367 0.88818 0.87513 0.95566 0.91943 0.93304 0.91800 0.95353 0.88942 0.93107 0.91629 0.95694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.57 101.05 1.07 1.46 16 2 O -0.33 -5.18 10.50 -40.78 -0.43 -5.61 16 3 C 0.55 8.90 7.94 34.33 0.27 9.17 16 4 O -0.51 -8.46 16.50 -19.31 -0.32 -8.78 16 5 C 0.02 0.38 6.71 -84.55 -0.57 -0.19 16 6 C -0.23 -2.92 10.62 29.68 0.32 -2.60 16 7 S 0.22 2.47 21.54 -107.50 -2.32 0.15 16 8 C 0.01 0.10 4.90 -13.62 -0.07 0.03 16 9 C 0.13 1.71 5.95 -4.98 -0.03 1.68 16 10 N -0.52 -8.90 4.86 -236.11 -1.15 -10.05 16 11 C 0.05 0.81 4.96 -3.83 -0.02 0.79 16 12 C -0.12 -2.16 6.09 -26.65 -0.16 -2.32 16 13 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 14 C 0.05 1.36 2.26 -91.69 -0.21 1.15 16 15 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 16 C -0.51 -14.22 8.56 -34.44 -0.29 -14.52 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -25.38 11.35 55.43 0.63 -24.75 16 20 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.07 1.46 4.12 -3.84 -0.02 1.44 16 25 N -0.41 -6.84 9.88 -8.53 -0.08 -6.92 16 26 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.19 2.01 8.03 -52.49 -0.42 1.59 16 30 H 0.09 0.97 8.06 -51.93 -0.42 0.55 16 31 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.03 0.43 6.45 -51.93 -0.34 0.09 16 33 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 2.42 6.15 -51.93 -0.32 2.11 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.07 1.44 8.12 -51.93 -0.42 1.02 16 40 H 0.02 0.56 6.85 -51.93 -0.36 0.21 16 LS Contribution 341.42 15.07 5.15 5.15 Total: -1.00 -31.53 341.42 -9.09 -40.62 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.61 Total: -1.42 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 0.06 Total: -4.98 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: -0.60 Total: -41.72 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.75 Total: -14.39 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.32 Total: 0.15 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.53 -9.09 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.285 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds