Wall clock time and date at job start Fri Apr 10 2020 22:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35684 * 117.00073 * 2 1 4 4 N 1.32302 * 119.67333 * 359.72722 * 3 2 1 5 5 C 1.32025 * 121.62668 * 179.71216 * 4 3 2 6 6 Cl 1.73602 * 119.59532 * 180.26958 * 5 4 3 7 7 C 1.38259 * 120.80086 * 0.56453 * 5 4 3 8 8 C 1.38721 * 119.27596 * 359.72689 * 7 5 4 9 9 C 1.38463 * 118.50127 * 359.97438 * 8 7 5 10 10 C 1.50694 * 120.42738 * 180.02562 * 9 8 7 11 11 N 1.46900 * 109.47763 * 259.98045 * 10 9 8 12 12 C 1.46851 * 110.99404 * 45.79398 * 11 10 9 13 13 C 1.53042 * 109.52451 * 185.84305 * 12 11 10 14 14 C 1.53121 * 109.27535 * 300.81908 * 13 12 11 15 15 C 1.50700 * 109.57657 * 177.58800 * 14 13 12 16 16 H 1.07998 * 120.00003 * 245.71490 * 15 14 13 17 17 C 1.37873 * 119.99544 * 65.71496 * 15 14 13 18 18 N 1.31514 * 120.00299 * 9.55217 * 17 15 14 19 19 Si 1.86807 * 119.99917 * 189.55640 * 17 15 14 20 20 H 1.48496 * 109.47282 * 94.98853 * 19 17 15 21 21 H 1.48500 * 109.47273 * 214.99425 * 19 17 15 22 22 H 1.48508 * 109.46843 * 334.99147 * 19 17 15 23 23 C 1.53124 * 109.15962 * 57.65114 * 14 13 12 24 24 C 1.46844 * 111.00453 * 169.99809 * 11 10 9 25 25 H 1.08997 * 109.47026 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47245 * 300.00003 * 1 2 3 27 27 H 1.09005 * 109.47088 * 59.99907 * 1 2 3 28 28 H 1.07999 * 120.36180 * 179.75056 * 7 5 4 29 29 H 1.08001 * 120.74966 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.47424 * 19.98392 * 10 9 8 31 31 H 1.09001 * 109.46910 * 139.98528 * 10 9 8 32 32 H 1.09004 * 109.46397 * 305.85090 * 12 11 10 33 33 H 1.08999 * 109.46694 * 65.82496 * 12 11 10 34 34 H 1.08992 * 109.50883 * 180.87668 * 13 12 11 35 35 H 1.08997 * 109.53547 * 60.77285 * 13 12 11 36 36 H 1.09003 * 109.52359 * 297.74826 * 14 13 12 37 37 H 0.97003 * 119.99850 * 179.97438 * 18 17 15 38 38 H 1.09002 * 109.50368 * 182.40459 * 23 14 13 39 39 H 1.09001 * 109.53487 * 62.31165 * 23 14 13 40 40 H 1.08998 * 109.46332 * 294.18170 * 24 11 10 41 41 H 1.09005 * 109.45625 * 54.16226 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3182 2.3144 -0.0055 5 6 1.8771 3.5105 0.0000 6 17 0.8725 4.9263 -0.0006 7 6 3.2527 3.6491 0.0000 8 6 4.0490 2.5132 -0.0001 9 6 3.4319 1.2737 0.0004 10 6 4.2549 0.0114 0.0010 11 7 4.3206 -0.5311 -1.3626 12 6 4.6162 0.5277 -2.3364 13 6 4.5333 -0.0435 -3.7538 14 6 5.5389 -1.1893 -3.8967 15 6 5.4216 -1.7956 -5.2713 16 1 5.0746 -2.8119 -5.3855 17 6 5.7573 -1.0527 -6.3832 18 7 6.3542 0.1105 -6.2413 19 14 5.3641 -1.6984 -8.0915 20 1 4.0665 -1.1375 -8.5462 21 1 6.4370 -1.2908 -9.0339 22 1 5.2763 -3.1803 -8.0524 23 6 5.2389 -2.2559 -2.8397 24 6 5.3013 -1.6206 -1.4489 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.7024 4.6311 0.0004 29 1 5.1260 2.5939 0.0003 30 1 5.2624 0.2347 0.3521 31 1 3.7940 -0.7225 0.6621 32 1 3.8914 1.3344 -2.2270 33 1 5.6196 0.9146 -2.1589 34 1 4.7680 0.7387 -4.4757 35 1 3.5264 -0.4180 -3.9375 36 1 6.5495 -0.8073 -3.7520 37 1 6.5907 0.6330 -7.0236 38 1 5.9777 -3.0544 -2.9086 39 1 4.2432 -2.6661 -3.0082 40 1 6.3015 -1.2236 -1.2755 41 1 5.0740 -2.3743 -0.6950 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237244377.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:22:40 Heat of formation + Delta-G solvation = -29.122012 kcal Electronic energy + Delta-G solvation = -23841.682127 eV Core-core repulsion = 20360.719830 eV Total energy + Delta-G solvation = -3480.962297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.94368 -39.72771 -38.98700 -37.61708 -36.05870 -34.22969 -32.90536 -31.67793 -31.40495 -28.45656 -28.05735 -26.23358 -24.25798 -23.94975 -23.57671 -22.29014 -20.33734 -19.47578 -18.46636 -18.40301 -17.30673 -16.82599 -16.73095 -16.33917 -16.09291 -15.39883 -15.22385 -14.97049 -14.92230 -14.74892 -14.38455 -14.22856 -14.04454 -13.36876 -13.16056 -12.99185 -12.92864 -12.79026 -12.68432 -12.43866 -12.34476 -12.23303 -12.05399 -11.88842 -11.87070 -11.33257 -10.95131 -10.89710 -10.67811 -10.63240 -10.39865 -9.46668 -9.05851 -8.11658 -6.18802 -0.18274 0.14588 0.66832 1.39336 1.41579 1.50921 2.12175 2.44027 2.46558 3.17728 3.19452 3.34115 3.68864 3.78313 4.00293 4.17209 4.23721 4.34993 4.37983 4.42098 4.43530 4.53654 4.58946 4.75308 4.76170 4.81658 4.86220 4.88098 5.01509 5.05427 5.12579 5.24448 5.27168 5.33983 5.52275 5.64225 5.97005 6.01284 6.12826 6.28576 6.34128 6.42343 6.53412 6.93154 7.47471 8.96742 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.003697 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.298963 B = 7571.574972 C = 8135.521144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.300 6.300 3 C 0.343 3.657 4 N -0.556 5.556 5 C 0.196 3.804 6 Cl -0.026 7.026 7 C -0.184 4.184 8 C -0.023 4.023 9 C -0.154 4.154 10 C 0.111 3.889 11 N -0.535 5.535 12 C 0.076 3.924 13 C -0.089 4.089 14 C 0.045 3.955 15 C -0.534 4.534 16 H 0.049 0.951 17 C 0.016 3.984 18 N -0.918 5.918 19 Si 0.945 3.055 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.268 1.268 23 C -0.099 4.099 24 C 0.068 3.932 25 H 0.120 0.880 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.175 0.825 29 H 0.175 0.825 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.024 0.976 34 H 0.039 0.961 35 H 0.027 0.973 36 H -0.003 1.003 37 H 0.260 0.740 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.029 0.971 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.406 6.269 17.556 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.206 6.206 3 C 0.163 3.837 4 N -0.283 5.283 5 C 0.033 3.967 6 Cl 0.002 6.998 7 C -0.205 4.205 8 C -0.049 4.049 9 C -0.157 4.157 10 C -0.017 4.017 11 N -0.260 5.260 12 C -0.052 4.052 13 C -0.127 4.127 14 C 0.026 3.974 15 C -0.572 4.572 16 H 0.068 0.932 17 C -0.182 4.182 18 N -0.557 5.557 19 Si 0.771 3.229 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.137 4.137 24 C -0.059 4.059 25 H 0.138 0.862 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.192 0.808 29 H 0.192 0.808 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.015 0.985 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.696 5.962 17.338 20.292 hybrid contribution 0.916 0.545 -1.233 1.630 sum -7.780 6.507 16.105 19.033 Atomic orbital electron populations 1.23029 0.76203 1.04551 1.01923 1.86360 1.23858 1.23390 1.86991 1.19537 0.89061 0.83775 0.91307 1.66484 1.42091 0.98339 1.21412 1.21492 0.89564 0.87294 0.98354 1.98402 1.70764 1.34215 1.96373 1.21944 0.90891 1.02115 1.05551 1.21741 1.02140 0.89478 0.91536 1.20045 0.91121 0.97497 1.07021 1.20876 0.97714 0.92545 0.90534 1.62027 1.49801 1.10267 1.03954 1.21938 0.97612 0.93116 0.92490 1.21348 0.98281 0.99081 0.94008 1.18647 0.93353 0.92455 0.92902 1.21582 1.43674 0.99132 0.92783 0.93247 1.25677 0.94552 0.95499 1.02500 1.70075 1.40838 1.14274 1.30533 0.85741 0.77830 0.78927 0.80385 1.20487 1.20875 1.19191 1.21531 1.00206 0.97959 0.93997 1.22053 0.92531 0.93573 0.97764 0.86192 0.91970 0.93348 0.80772 0.80791 0.92058 0.88778 0.92361 0.95806 0.94223 0.95409 0.98461 0.93135 0.92720 0.93367 0.95238 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.38 113.37 1.18 1.99 16 2 O -0.30 -8.39 9.73 -90.02 -0.88 -9.27 16 3 C 0.34 9.67 7.47 84.77 0.63 10.30 16 4 N -0.56 -15.50 9.20 -299.76 -2.76 -18.26 16 5 C 0.20 4.75 7.27 84.67 0.62 5.37 16 6 Cl -0.03 -0.55 29.11 -2.72 -0.08 -0.63 16 7 C -0.18 -3.68 9.87 22.39 0.22 -3.46 16 8 C -0.02 -0.48 8.81 22.44 0.20 -0.29 16 9 C -0.15 -3.90 3.70 -19.67 -0.07 -3.97 16 10 C 0.11 2.80 5.09 85.56 0.44 3.24 16 11 N -0.54 -17.70 4.80 -900.92 -4.32 -22.03 16 12 C 0.08 2.89 4.82 86.33 0.42 3.30 16 13 C -0.09 -4.26 5.19 30.65 0.16 -4.10 16 14 C 0.05 2.27 2.03 -11.46 -0.02 2.25 16 15 C -0.53 -30.01 8.48 25.60 0.22 -29.79 16 16 H 0.05 2.75 7.77 -2.91 -0.02 2.73 16 17 C 0.02 0.93 5.23 84.65 0.44 1.37 16 18 N -0.92 -53.92 12.20 21.45 0.26 -53.66 16 19 Si 0.95 44.41 29.55 68.60 2.03 46.44 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 C -0.10 -4.08 5.32 30.65 0.16 -3.92 16 24 C 0.07 2.24 5.42 86.32 0.47 2.71 16 25 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 1.23 8.11 -2.39 -0.02 1.21 16 27 H 0.05 1.13 8.10 -2.38 -0.02 1.11 16 28 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.06 1.32 7.97 -2.38 -0.02 1.30 16 31 H 0.09 2.24 7.87 -2.39 -0.02 2.23 16 32 H 0.06 2.14 6.03 -2.39 -0.01 2.12 16 33 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.04 2.13 7.00 -2.39 -0.02 2.12 16 35 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.00 -0.16 8.09 -2.39 -0.02 -0.18 16 37 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.09 2.46 8.12 -2.38 -0.02 2.44 16 Total: -1.00 -65.52 347.30 0.32 -65.20 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.02 Total: 7.22 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 5.05 Total: -15.01 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -6.82 Total: -93.94 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.88 Total: -9.27 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -65.52 0.32 -65.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237244377.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.076 kcal (2) G-P(sol) polarization free energy of solvation -65.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds