Wall clock time and date at job start Fri Apr 10 2020 22:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35671 * 116.99976 * 2 1 4 4 N 1.32297 * 119.67550 * 359.97438 * 3 2 1 5 5 C 1.32026 * 121.63043 * 179.97438 * 4 3 2 6 6 Cl 1.73597 * 119.59843 * 179.97438 * 5 4 3 7 7 C 1.38264 * 120.80176 * 359.97438 * 5 4 3 8 8 C 1.38728 * 119.27564 * 359.79048 * 7 5 4 9 9 C 1.38463 * 118.49392 * 0.47034 * 8 7 5 10 10 C 1.50699 * 120.42413 * 179.75674 * 9 8 7 11 11 N 1.46907 * 109.47515 * 259.72669 * 10 9 8 12 12 C 1.46851 * 110.99532 * 66.04487 * 11 10 9 13 13 C 1.53043 * 109.51976 * 174.16027 * 12 11 10 14 14 C 1.53120 * 109.27752 * 59.18341 * 13 12 11 15 15 C 1.53119 * 109.15880 * 302.34276 * 14 13 12 16 16 H 1.08997 * 109.50437 * 297.71540 * 15 14 13 17 17 C 1.50703 * 109.50410 * 177.63128 * 15 14 13 18 18 H 1.07997 * 120.00531 * 275.20818 * 17 15 14 19 19 C 1.37879 * 119.99561 * 95.20714 * 17 15 14 20 20 N 1.31513 * 119.99864 * 185.53394 * 19 17 15 21 21 Si 1.86799 * 120.00056 * 5.52554 * 19 17 15 22 22 H 1.48505 * 109.46723 * 84.78590 * 21 19 17 23 23 H 1.48496 * 109.47350 * 204.78196 * 21 19 17 24 24 H 1.48498 * 109.47469 * 324.79044 * 21 19 17 25 25 C 1.46842 * 110.99905 * 301.83945 * 11 10 9 26 26 H 1.09004 * 109.46727 * 299.99539 * 1 2 3 27 27 H 1.08992 * 109.47198 * 59.99298 * 1 2 3 28 28 H 1.08998 * 109.46842 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.36638 * 180.02562 * 7 5 4 30 30 H 1.07995 * 120.75173 * 180.25672 * 8 7 5 31 31 H 1.09000 * 109.47461 * 139.73022 * 10 9 8 32 32 H 1.09003 * 109.47474 * 19.72883 * 10 9 8 33 33 H 1.08995 * 109.46707 * 294.17732 * 12 11 10 34 34 H 1.08999 * 109.46032 * 54.15049 * 12 11 10 35 35 H 1.09003 * 109.49997 * 179.12330 * 13 12 11 36 36 H 1.08999 * 109.50125 * 299.24125 * 13 12 11 37 37 H 1.09001 * 109.52264 * 62.24161 * 14 13 12 38 38 H 1.08997 * 109.52450 * 182.37350 * 14 13 12 39 39 H 0.96998 * 120.00048 * 180.02562 * 20 19 17 40 40 H 1.09004 * 109.46450 * 305.85359 * 25 11 10 41 41 H 1.09000 * 109.46537 * 65.82287 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 7 1.3181 2.3143 -0.0005 5 6 1.8771 3.5104 0.0000 6 17 0.8725 4.9262 -0.0014 7 6 3.2527 3.6491 0.0016 8 6 4.0491 2.5132 0.0071 9 6 3.4319 1.2737 0.0008 10 6 4.2549 0.0113 0.0010 11 7 4.3216 -0.5300 -1.3631 12 6 5.0656 0.3721 -2.2514 13 6 5.2402 -0.2881 -3.6210 14 6 3.8620 -0.5957 -4.2133 15 6 3.0894 -1.4972 -3.2464 16 1 3.6187 -2.4427 -3.1288 17 6 1.7100 -1.7575 -3.7945 18 1 0.9142 -1.0505 -3.6124 19 6 1.4639 -2.8984 -4.5287 20 7 0.2917 -3.0735 -5.0986 21 14 2.7956 -4.1952 -4.7139 22 1 2.7640 -5.1078 -3.5429 23 1 2.5583 -4.9746 -5.9554 24 1 4.1231 -3.5341 -4.7906 25 6 2.9773 -0.8020 -1.8876 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.7024 4.6310 0.0024 30 1 5.1260 2.5938 0.0126 31 1 3.7936 -0.7232 0.6611 32 1 5.2622 0.2343 0.3530 33 1 4.5144 1.3054 -2.3657 34 1 6.0452 0.5794 -1.8207 35 1 5.7789 0.3881 -4.2849 36 1 5.8033 -1.2146 -3.5093 37 1 3.3133 0.3345 -4.3612 38 1 3.9819 -1.1041 -5.1699 39 1 0.1185 -3.8762 -5.6148 40 1 2.4400 -1.4474 -1.1926 41 1 2.4358 0.1368 -2.0036 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237245065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:22:43 Heat of formation + Delta-G solvation = -6.752669 kcal Electronic energy + Delta-G solvation = -24648.051055 eV Core-core repulsion = 21168.058766 eV Total energy + Delta-G solvation = -3479.992290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.119 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02866 -38.30358 -37.95131 -36.62766 -34.40493 -32.61392 -31.88358 -30.39417 -30.16690 -27.24570 -26.21224 -25.00407 -23.26720 -23.11169 -21.53131 -20.93673 -18.80336 -18.38069 -17.39146 -16.85818 -16.16529 -15.82132 -15.40469 -14.82005 -14.54417 -14.13226 -14.00275 -13.89565 -13.54187 -13.43427 -13.08315 -12.75968 -12.47911 -12.18658 -11.94704 -11.83096 -11.68740 -11.36687 -11.27825 -11.13536 -10.93533 -10.78604 -10.60854 -10.18405 -9.89920 -9.87510 -9.76433 -9.49554 -9.25000 -8.90165 -8.49825 -8.37240 -7.81454 -6.03860 -4.02276 0.83894 1.12231 1.64801 3.18630 3.34350 3.41891 3.46361 3.52154 4.32128 4.47304 4.49297 4.70648 4.76481 4.94300 5.19656 5.26793 5.35071 5.47785 5.53755 5.58691 5.61694 5.73861 5.85942 5.91670 5.94560 5.99293 6.08871 6.19844 6.23588 6.40158 6.47858 6.54345 6.81070 6.86781 6.94158 7.21210 7.34120 7.51266 7.59220 7.62961 7.64339 7.90915 8.58018 9.01097 9.60473 11.09436 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.016772 B = 0.004775 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.078995 B = 5862.260505 C = 6547.981635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.284 6.284 3 C 0.360 3.640 4 N -0.536 5.536 5 C 0.213 3.787 6 Cl -0.036 7.036 7 C -0.198 4.198 8 C -0.026 4.026 9 C -0.184 4.184 10 C 0.105 3.895 11 N -0.529 5.529 12 C 0.059 3.941 13 C -0.120 4.120 14 C -0.112 4.112 15 C 0.018 3.982 16 H 0.038 0.962 17 C -0.506 4.506 18 H 0.068 0.932 19 C 0.072 3.928 20 N -0.903 5.903 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.293 1.293 24 H -0.263 1.263 25 C 0.077 3.923 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.262 0.738 40 H 0.079 0.921 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.739 12.098 12.366 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.189 6.189 3 C 0.180 3.820 4 N -0.263 5.263 5 C 0.049 3.951 6 Cl -0.008 7.008 7 C -0.219 4.219 8 C -0.052 4.052 9 C -0.189 4.189 10 C -0.023 4.023 11 N -0.251 5.251 12 C -0.069 4.069 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.001 4.001 16 H 0.056 0.944 17 C -0.545 4.545 18 H 0.086 0.914 19 C -0.129 4.129 20 N -0.541 5.541 21 Si 0.706 3.294 22 H -0.202 1.202 23 H -0.219 1.219 24 H -0.188 1.188 25 C -0.050 4.050 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.162 0.838 30 H 0.166 0.834 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 6.972 11.255 12.251 18.038 hybrid contribution 0.457 0.513 -0.332 0.764 sum 7.430 11.768 11.918 18.323 Atomic orbital electron populations 1.22917 0.76815 1.03768 1.02083 1.86512 1.23242 1.22703 1.86453 1.19410 0.88719 0.83949 0.89912 1.66533 1.41492 0.97802 1.20439 1.21163 0.88538 0.87431 0.97936 1.98400 1.70941 1.35036 1.96413 1.21593 0.91667 1.00754 1.07914 1.21313 1.00500 0.90129 0.93252 1.20953 0.92193 0.98872 1.06921 1.21134 0.97774 0.90420 0.93009 1.62487 1.19236 1.42749 1.00636 1.22029 0.96953 0.93931 0.93968 1.21679 0.99289 1.00070 0.94762 1.21867 0.93369 1.00171 0.99657 1.19205 0.96152 0.94573 0.90183 0.94378 1.20913 0.94199 1.06825 1.32527 0.91354 1.25036 0.95198 0.97963 0.94740 1.69916 1.22559 1.27701 1.33904 0.86844 0.83217 0.81986 0.77401 1.20177 1.21923 1.18815 1.22412 0.85723 0.98783 0.98034 0.92807 0.91811 0.87938 0.83807 0.83428 0.89310 0.90189 0.95552 0.92053 0.93012 0.91940 0.93554 0.93036 0.92778 0.90305 0.95984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.38 101.05 1.05 1.63 16 2 O -0.28 -4.73 6.41 -18.71 -0.12 -4.85 16 3 C 0.36 5.75 6.00 -17.13 -0.10 5.65 16 4 N -0.54 -8.53 9.19 -10.44 -0.10 -8.62 16 5 C 0.21 2.92 7.27 -17.46 -0.13 2.79 16 6 Cl -0.04 -0.44 29.11 -51.86 -1.51 -1.95 16 7 C -0.20 -2.24 9.87 -39.39 -0.39 -2.62 16 8 C -0.03 -0.29 9.09 -39.32 -0.36 -0.65 16 9 C -0.18 -2.55 4.08 -104.32 -0.43 -2.98 16 10 C 0.11 1.44 5.40 -4.97 -0.03 1.41 16 11 N -0.53 -8.98 4.86 -236.10 -1.15 -10.13 16 12 C 0.06 0.92 5.01 -3.83 -0.02 0.90 16 13 C -0.12 -2.07 6.09 -26.65 -0.16 -2.24 16 14 C -0.11 -2.41 5.27 -26.61 -0.14 -2.55 16 15 C 0.02 0.43 1.94 -91.69 -0.18 0.25 16 16 H 0.04 0.93 5.26 -51.93 -0.27 0.66 16 17 C -0.51 -14.08 8.86 -34.44 -0.31 -14.38 16 18 H 0.07 2.08 8.06 -52.49 -0.42 1.66 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 21 Si 0.88 21.75 27.01 -169.99 -4.59 17.16 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.26 -6.29 6.80 56.52 0.38 -5.91 16 25 C 0.08 1.58 3.01 -3.83 -0.01 1.57 16 26 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 28 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.09 1.23 7.87 -51.93 -0.41 0.82 16 32 H 0.08 0.87 7.95 -51.93 -0.41 0.46 16 33 H 0.03 0.43 7.03 -51.93 -0.37 0.06 16 34 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.08 1.68 6.69 -51.93 -0.35 1.34 16 41 H 0.02 0.48 5.80 -51.93 -0.30 0.18 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -31.03 337.34 -8.80 -39.83 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.90 Total: -0.58 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -1.29 Total: -9.25 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.47 Total: -45.44 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.12 Total: -4.85 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.59 Total: 17.16 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.51 Total: -1.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.03 -8.80 -39.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237245065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.081 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds