Wall clock time and date at job start Fri Apr 10 2020 22:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35668 * 117.00477 * 2 1 4 4 C 1.38885 * 119.67835 * 180.02562 * 3 2 1 5 5 C 1.38419 * 119.14176 * 179.70753 * 4 3 2 6 6 C 1.38770 * 118.49996 * 0.51029 * 5 4 3 7 7 C 1.50697 * 120.36081 * 179.78590 * 6 5 4 8 8 N 1.46902 * 109.47604 * 104.72228 * 7 6 5 9 9 C 1.46846 * 110.99617 * 294.20982 * 8 7 6 10 10 C 1.53040 * 109.51964 * 174.15808 * 9 8 7 11 11 C 1.53119 * 109.28089 * 59.17912 * 10 9 8 12 12 C 1.53124 * 109.15841 * 302.34776 * 11 10 9 13 13 H 1.08999 * 109.49853 * 297.70868 * 12 11 10 14 14 C 1.50693 * 109.50241 * 177.59421 * 12 11 10 15 15 H 1.07996 * 120.00476 * 240.19349 * 14 12 11 16 16 C 1.37879 * 119.99955 * 60.19409 * 14 12 11 17 17 N 1.31513 * 120.00126 * 359.97438 * 16 14 12 18 18 Si 1.86809 * 120.00078 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46982 * 89.99935 * 18 16 14 20 20 H 1.48500 * 109.46811 * 210.00128 * 18 16 14 21 21 H 1.48502 * 109.46845 * 329.99882 * 18 16 14 22 22 C 1.46846 * 111.00204 * 169.99877 * 8 7 6 23 23 C 1.38222 * 119.27480 * 359.50633 * 6 5 4 24 24 Cl 1.73603 * 119.59638 * 180.25127 * 23 6 5 25 25 N 1.32050 * 120.80453 * 0.23252 * 23 6 5 26 26 H 1.09007 * 109.46524 * 299.99922 * 1 2 3 27 27 H 1.09001 * 109.47376 * 59.98959 * 1 2 3 28 28 H 1.08999 * 109.47572 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.42889 * 359.97438 * 4 3 2 30 30 H 1.07999 * 120.75100 * 180.29214 * 5 4 3 31 31 H 1.08997 * 109.47156 * 344.71757 * 7 6 5 32 32 H 1.09007 * 109.47324 * 224.72521 * 7 6 5 33 33 H 1.08996 * 109.46231 * 294.17554 * 9 8 7 34 34 H 1.09004 * 109.46418 * 54.14394 * 9 8 7 35 35 H 1.09004 * 109.50602 * 299.23671 * 10 9 8 36 36 H 1.09001 * 109.53370 * 179.14510 * 10 9 8 37 37 H 1.08998 * 109.52394 * 182.44064 * 11 10 9 38 38 H 1.09003 * 109.56984 * 62.28008 * 11 10 9 39 39 H 0.97003 * 119.99788 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.45990 * 305.85570 * 22 8 7 41 41 H 1.08997 * 109.46419 * 65.82250 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4324 1.2735 -0.0005 5 6 4.0493 2.5126 -0.0067 6 6 3.2528 3.6489 -0.0013 7 6 3.8803 5.0190 -0.0028 8 7 3.7575 5.6125 -1.3410 9 6 4.5464 4.8601 -2.3247 10 6 4.2808 5.4154 -3.7258 11 6 4.6633 6.8976 -3.7631 12 6 3.8629 7.6501 -2.6964 13 1 2.7988 7.5763 -2.9205 14 6 4.2764 9.0992 -2.6863 15 1 4.6954 9.5350 -1.7915 16 6 4.1196 9.8687 -3.8196 17 7 3.6097 9.3380 -4.9095 18 14 4.6327 11.6649 -3.8073 19 1 6.0523 11.7770 -4.2287 20 1 3.7753 12.4310 -4.7472 21 1 4.4784 12.2144 -2.4364 22 6 4.1407 7.0300 -1.3252 23 6 1.8775 3.5103 -0.0004 24 17 0.8731 4.9263 -0.0002 25 7 1.3184 2.3140 0.0000 26 1 -0.3632 0.5139 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 4.0222 0.3689 -0.0005 30 1 5.1263 2.5933 -0.0120 31 1 4.9342 4.9363 0.2626 32 1 3.3715 5.6526 0.7238 33 1 5.6065 4.9568 -2.0906 34 1 4.2617 3.8084 -2.2909 35 1 3.2232 5.3064 -3.9661 36 1 4.8778 4.8670 -4.4545 37 1 4.4352 7.3081 -4.7468 38 1 5.7292 7.0048 -3.5618 39 1 3.4998 9.8793 -5.7069 40 1 3.5612 7.5544 -0.5654 41 1 5.2027 7.1166 -1.0958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237797145.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:22:47 Heat of formation + Delta-G solvation = -10.126076 kcal Electronic energy + Delta-G solvation = -23597.878378 eV Core-core repulsion = 20117.739806 eV Total energy + Delta-G solvation = -3480.138572 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85736 -38.68979 -37.71737 -36.34821 -34.22511 -32.68771 -31.94829 -30.50236 -29.71620 -27.65881 -25.68492 -24.93224 -23.63817 -22.68352 -21.69238 -20.91736 -18.69584 -18.53926 -17.46965 -16.44487 -16.22939 -15.50253 -15.19142 -15.05089 -14.69780 -14.48673 -13.95755 -13.74746 -13.62171 -13.41407 -13.08117 -12.53937 -12.27222 -12.14670 -11.94876 -11.92568 -11.63882 -11.36188 -10.98094 -10.93293 -10.83671 -10.65388 -10.64322 -10.12579 -9.91125 -9.88884 -9.80480 -9.44608 -9.05761 -8.68364 -8.44057 -8.28155 -7.66095 -5.95218 -4.01313 0.86812 1.04935 1.91439 2.89584 3.31844 3.38896 3.41563 3.47550 4.30438 4.41350 4.55291 4.68826 4.82173 4.93829 5.07614 5.13344 5.17939 5.34891 5.38534 5.46837 5.62996 5.73018 5.81745 5.85560 6.03163 6.10025 6.13831 6.27362 6.41536 6.52873 6.73161 6.76838 6.95289 6.98516 7.24121 7.40857 7.50984 7.66295 7.76369 7.81348 8.11599 8.20286 8.50275 9.02924 9.62867 11.10680 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.026136 B = 0.003384 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.054964 B = 8271.373538 C = 8559.408958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.307 6.307 3 C 0.331 3.669 4 C -0.190 4.190 5 C -0.028 4.028 6 C -0.140 4.140 7 C 0.098 3.902 8 N -0.528 5.528 9 C 0.064 3.936 10 C -0.116 4.116 11 C -0.110 4.110 12 C 0.056 3.944 13 H 0.035 0.965 14 C -0.514 4.514 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.070 3.930 23 C 0.235 3.765 24 Cl -0.005 7.005 25 N -0.539 5.539 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.023 0.977 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.029 0.971 39 H 0.259 0.741 40 H 0.060 0.940 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.641 -17.121 10.318 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.214 6.214 3 C 0.152 3.848 4 C -0.211 4.211 5 C -0.054 4.054 6 C -0.144 4.144 7 C -0.031 4.031 8 N -0.252 5.252 9 C -0.064 4.064 10 C -0.154 4.154 11 C -0.148 4.148 12 C 0.038 3.962 13 H 0.053 0.947 14 C -0.553 4.553 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.056 4.056 23 C 0.071 3.929 24 Cl 0.023 6.977 25 N -0.265 5.265 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.164 0.836 30 H 0.166 0.834 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -3.089 -17.300 9.992 20.215 hybrid contribution 1.586 1.227 0.123 2.009 sum -1.503 -16.073 10.115 19.050 Atomic orbital electron populations 1.22881 0.77025 1.02912 1.02783 1.86236 1.23104 1.24118 1.87931 1.19552 0.89107 0.83769 0.92404 1.21054 0.91785 0.99601 1.08631 1.21344 1.00603 0.90201 0.93207 1.20449 0.92050 0.97426 1.04515 1.20910 0.98037 0.90531 0.93574 1.62021 1.56187 1.03788 1.03210 1.22036 0.94222 0.96454 0.93722 1.21658 1.01098 0.98980 0.93671 1.21649 0.97909 0.90950 1.04286 1.18646 0.96792 0.92878 0.87922 0.94688 1.21141 1.41599 0.94908 0.97634 0.92867 1.24929 0.95140 0.98092 0.95657 1.69895 1.44847 1.35825 1.02075 0.86648 0.78366 0.85434 0.77838 1.20838 1.21292 1.19976 1.22310 0.96871 0.84740 1.01712 1.21111 0.88609 0.87385 0.95757 1.98445 1.69583 1.33824 1.95808 1.66571 1.41471 0.97875 1.20572 0.92214 0.92048 0.88601 0.83645 0.83421 0.94078 0.89504 0.95866 0.92754 0.92183 0.93681 0.89195 0.95207 0.93097 0.92126 0.96229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.31 -3.54 10.48 -18.71 -0.20 -3.73 16 3 C 0.33 4.22 7.49 -17.12 -0.13 4.10 16 4 C -0.19 -2.05 10.04 -39.28 -0.39 -2.45 16 5 C -0.03 -0.30 9.08 -39.32 -0.36 -0.66 16 6 C -0.14 -1.89 4.44 -104.43 -0.46 -2.35 16 7 C 0.10 1.40 4.44 -4.98 -0.02 1.38 16 8 N -0.53 -9.30 4.55 -236.12 -1.07 -10.37 16 9 C 0.06 1.09 5.30 -3.83 -0.02 1.07 16 10 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 11 C -0.11 -2.57 5.03 -26.61 -0.13 -2.70 16 12 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 13 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 14 C -0.51 -13.91 8.56 -34.44 -0.29 -14.21 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.73 5.31 -17.82 -0.09 1.64 16 17 N -0.89 -25.27 11.36 55.43 0.63 -24.64 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.07 1.44 4.68 -3.84 -0.02 1.42 16 23 C 0.23 3.46 7.27 -17.46 -0.13 3.33 16 24 Cl -0.01 -0.08 27.70 -51.86 -1.44 -1.52 16 25 N -0.54 -7.73 9.19 -10.44 -0.10 -7.83 16 26 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 27 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.15 1.24 8.05 -52.49 -0.42 0.82 16 31 H 0.04 0.53 7.98 -51.93 -0.41 0.12 16 32 H 0.09 1.23 7.43 -51.93 -0.39 0.84 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.85 6.55 -51.93 -0.34 0.51 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 2.37 6.16 -51.93 -0.32 2.05 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.06 1.23 8.02 -51.93 -0.42 0.81 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -29.30 345.99 -9.42 -38.72 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -6.06 Total: -2.71 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -1.37 Total: -9.29 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -0.54 Total: -42.84 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -0.20 Total: -3.73 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.44 Total: -1.52 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.30 -9.42 -38.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237797145.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.590 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds