Wall clock time and date at job start Fri Apr 10 2020 22:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35677 * 117.00075 * 2 1 4 4 C 1.38889 * 119.67582 * 179.72348 * 3 2 1 5 5 C 1.38415 * 119.14337 * 180.25603 * 4 3 2 6 6 C 1.38766 * 118.49802 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.36343 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.47407 * 254.45717 * 7 6 5 9 9 C 1.46842 * 111.00395 * 75.75798 * 8 7 6 10 10 C 1.53031 * 109.52368 * 185.83793 * 9 8 7 11 11 C 1.53117 * 109.28293 * 300.82636 * 10 9 8 12 12 C 1.53117 * 109.15971 * 57.65185 * 11 10 9 13 13 H 1.09000 * 109.49972 * 62.33292 * 12 11 10 14 14 C 1.50704 * 109.50245 * 182.40545 * 12 11 10 15 15 H 1.07994 * 120.00041 * 119.99635 * 14 12 11 16 16 C 1.37885 * 119.99967 * 300.00247 * 14 12 11 17 17 N 1.31519 * 119.99875 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99921 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46900 * 89.99995 * 18 16 14 20 20 H 1.48494 * 109.46993 * 209.99648 * 18 16 14 21 21 H 1.48502 * 109.47161 * 330.00160 * 18 16 14 22 22 C 1.46851 * 110.99809 * 199.97624 * 8 7 6 23 23 C 1.38228 * 119.28090 * 0.02562 * 6 5 4 24 24 Cl 1.73589 * 119.60120 * 179.97438 * 23 6 5 25 25 N 1.32052 * 120.79512 * 359.97438 * 23 6 5 26 26 H 1.08998 * 109.47358 * 299.99789 * 1 2 3 27 27 H 1.09003 * 109.47104 * 60.00462 * 1 2 3 28 28 H 1.08999 * 109.47089 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.43062 * 0.27596 * 4 3 2 30 30 H 1.07998 * 120.75391 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46682 * 14.45417 * 7 6 5 32 32 H 1.09000 * 109.47778 * 134.45031 * 7 6 5 33 33 H 1.08999 * 109.46641 * 305.86224 * 9 8 7 34 34 H 1.09012 * 109.45575 * 65.82846 * 9 8 7 35 35 H 1.09003 * 109.49927 * 60.76933 * 10 9 8 36 36 H 1.09005 * 109.50392 * 180.88495 * 10 9 8 37 37 H 1.09006 * 109.52468 * 177.56147 * 11 10 9 38 38 H 1.09004 * 109.52336 * 297.68431 * 11 10 9 39 39 H 0.96994 * 119.99240 * 180.02562 * 17 16 14 40 40 H 1.08995 * 109.45994 * 294.16835 * 22 8 7 41 41 H 1.08998 * 109.46632 * 54.14277 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4323 1.2737 0.0058 5 6 4.0492 2.5128 0.0112 6 6 3.2526 3.6490 0.0110 7 6 3.8800 5.0192 0.0173 8 7 3.7410 5.6153 1.3527 9 6 4.6935 5.0181 2.2974 10 6 4.4234 5.5557 3.7045 11 6 4.5681 7.0800 3.6999 12 6 3.5995 7.6736 2.6732 13 1 2.5748 7.4390 2.9616 14 6 3.7772 9.1692 2.6199 15 1 4.0676 9.6458 1.6954 16 6 3.5692 9.9289 3.7516 17 7 3.2162 9.3483 4.8777 18 14 3.7902 11.7826 3.6857 19 1 2.5005 12.4221 3.3209 20 1 4.2287 12.2764 5.0157 21 1 4.8168 12.1229 2.6681 22 6 3.8935 7.0748 1.2959 23 6 1.8773 3.5104 0.0062 24 17 0.8728 4.9262 0.0066 25 7 1.3184 2.3141 0.0011 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.0222 0.3690 0.0059 30 1 5.1262 2.5935 0.0153 31 1 4.9371 4.9358 -0.2352 32 1 3.3799 5.6512 -0.7166 33 1 4.5773 3.9344 2.2941 34 1 5.7101 5.2752 1.9994 35 1 3.4117 5.2870 4.0086 36 1 5.1406 5.1242 4.4028 37 1 4.3342 7.4712 4.6901 38 1 5.5908 7.3480 3.4346 39 1 3.0695 9.8829 5.6736 40 1 4.9137 7.3221 1.0027 41 1 3.1962 7.4847 0.5653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237797146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:22:50 Heat of formation + Delta-G solvation = -10.314321 kcal Electronic energy + Delta-G solvation = -23590.815120 eV Core-core repulsion = 20110.668385 eV Total energy + Delta-G solvation = -3480.146735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.119 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.82394 -38.65421 -37.72526 -36.32669 -34.20724 -32.69176 -31.94109 -30.47457 -29.74140 -27.64326 -25.66298 -24.93373 -23.61073 -22.66867 -21.66386 -20.96306 -18.67067 -18.54656 -17.45168 -16.43537 -16.21330 -15.48219 -15.17391 -15.02853 -14.68525 -14.47929 -13.96789 -13.77045 -13.58347 -13.40147 -13.06310 -12.54080 -12.25685 -12.15311 -11.93154 -11.92718 -11.63552 -11.33734 -10.96074 -10.93750 -10.81899 -10.66253 -10.62034 -10.12001 -9.89467 -9.88121 -9.81023 -9.44711 -9.05823 -8.68067 -8.41048 -8.28084 -7.66933 -5.95065 -4.01154 0.89142 1.07502 1.93992 2.91437 3.32177 3.38993 3.41457 3.49756 4.32182 4.41896 4.55483 4.71262 4.83949 4.96289 5.09084 5.14886 5.20216 5.35029 5.38323 5.47736 5.63598 5.72260 5.81888 5.86363 6.02606 6.10776 6.15141 6.27982 6.41504 6.52972 6.72947 6.76992 6.97045 6.98861 7.24246 7.41109 7.53361 7.66450 7.76550 7.81570 8.11881 8.20654 8.50473 9.03077 9.62996 11.10779 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.003454 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.901587 B = 8105.758447 C = 8469.437169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.307 6.307 3 C 0.330 3.670 4 C -0.190 4.190 5 C -0.028 4.028 6 C -0.138 4.138 7 C 0.097 3.903 8 N -0.529 5.529 9 C 0.064 3.936 10 C -0.116 4.116 11 C -0.110 4.110 12 C 0.056 3.944 13 H 0.035 0.965 14 C -0.514 4.514 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.071 3.929 23 C 0.235 3.765 24 Cl -0.006 7.006 25 N -0.539 5.539 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.024 0.976 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.029 0.971 39 H 0.259 0.741 40 H 0.019 0.981 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.319 -16.990 -10.225 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.214 6.214 3 C 0.151 3.849 4 C -0.211 4.211 5 C -0.054 4.054 6 C -0.142 4.142 7 C -0.031 4.031 8 N -0.253 5.253 9 C -0.064 4.064 10 C -0.154 4.154 11 C -0.148 4.148 12 C 0.037 3.963 13 H 0.053 0.947 14 C -0.553 4.553 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.056 4.056 23 C 0.072 3.928 24 Cl 0.023 6.977 25 N -0.265 5.265 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.732 -17.247 -9.866 19.945 hybrid contribution 1.367 1.392 -0.202 1.961 sum -0.365 -15.856 -10.068 18.785 Atomic orbital electron populations 1.22876 0.77049 1.02890 1.02781 1.86235 1.23087 1.24135 1.87965 1.19547 0.89106 0.83764 0.92484 1.21049 0.91782 0.99591 1.08666 1.21326 1.00553 0.90203 0.93330 1.20466 0.92022 0.97443 1.04288 1.20899 0.98086 0.90721 0.93444 1.61953 1.51692 1.06453 1.05187 1.22044 0.92719 0.97484 0.94123 1.21660 1.00740 0.99274 0.93745 1.21650 0.98328 0.90499 1.04333 1.18647 0.96054 0.93438 0.88115 0.94710 1.21146 1.46538 0.91706 0.95890 0.92874 1.24930 0.95144 0.98198 0.95553 1.69895 1.47281 1.35016 1.00457 0.86646 0.78345 0.86064 0.77217 1.20743 1.21330 1.20040 1.22319 0.98051 0.83564 1.01634 1.21112 0.88632 0.87367 0.95728 1.98446 1.69599 1.33835 1.95804 1.66562 1.41493 0.97889 1.20552 0.92053 0.92223 0.88623 0.83689 0.83461 0.93843 0.89609 0.92749 0.95805 0.92193 0.93654 0.89160 0.95203 0.93102 0.96250 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.41 16 2 O -0.31 -3.58 10.48 -18.73 -0.20 -3.78 16 3 C 0.33 4.26 7.49 -17.13 -0.13 4.14 16 4 C -0.19 -2.07 10.04 -39.28 -0.39 -2.47 16 5 C -0.03 -0.31 9.29 -39.32 -0.37 -0.67 16 6 C -0.14 -1.87 4.82 -104.43 -0.50 -2.37 16 7 C 0.10 1.38 4.48 -4.98 -0.02 1.36 16 8 N -0.53 -9.29 4.43 -236.12 -1.05 -10.34 16 9 C 0.06 1.09 5.29 -3.84 -0.02 1.07 16 10 C -0.12 -2.26 6.09 -26.65 -0.16 -2.42 16 11 C -0.11 -2.57 5.02 -26.61 -0.13 -2.70 16 12 C 0.06 1.38 2.26 -91.69 -0.21 1.18 16 13 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.51 -13.93 8.56 -34.44 -0.29 -14.22 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.73 5.30 -17.81 -0.09 1.64 16 17 N -0.89 -25.28 11.35 55.43 0.63 -24.65 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.07 1.45 4.65 -3.83 -0.02 1.43 16 23 C 0.23 3.51 7.27 -17.46 -0.13 3.38 16 24 Cl -0.01 -0.09 27.68 -51.86 -1.44 -1.52 16 25 N -0.54 -7.84 9.19 -10.44 -0.10 -7.94 16 26 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.15 1.22 8.04 -52.49 -0.42 0.80 16 31 H 0.04 0.55 7.85 -51.93 -0.41 0.15 16 32 H 0.09 1.22 7.26 -51.93 -0.38 0.84 16 33 H 0.05 0.83 7.08 -51.93 -0.37 0.47 16 34 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 LS Contribution 346.56 15.07 5.22 5.22 Total: -1.00 -29.38 346.56 -9.44 -38.81 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -6.07 Total: -2.72 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -1.42 Total: -9.26 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -0.51 Total: -42.93 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -0.20 Total: -3.78 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.44 Total: -1.52 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.38 -9.44 -38.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237797146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.499 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds