Wall clock time and date at job start Fri Apr 10 2020 22:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35675 * 117.00021 * 2 1 4 4 C 1.38893 * 119.67596 * 180.02562 * 3 2 1 5 5 C 1.38414 * 119.14222 * 180.02562 * 4 3 2 6 6 C 1.38772 * 118.49946 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.35694 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46971 * 105.60423 * 7 6 5 9 9 C 1.46849 * 110.99662 * 294.20815 * 8 7 6 10 10 C 1.53037 * 109.51282 * 174.15725 * 9 8 7 11 11 C 1.53122 * 109.27751 * 59.18532 * 10 9 8 12 12 C 1.50699 * 109.52180 * 182.37957 * 11 10 9 13 13 H 1.08004 * 120.00474 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00150 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99874 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00144 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47137 * 59.99940 * 16 14 12 18 18 H 1.48498 * 109.47039 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47208 * 299.99690 * 16 14 12 20 20 C 1.53119 * 109.16251 * 302.34463 * 11 10 9 21 21 C 1.46850 * 110.98918 * 170.00683 * 8 7 6 22 22 C 1.38218 * 119.27599 * 0.27924 * 6 5 4 23 23 Cl 1.73603 * 119.59603 * 179.70074 * 22 6 5 24 24 N 1.32058 * 120.80571 * 359.45146 * 22 6 5 25 25 H 1.09005 * 109.47320 * 299.99732 * 1 2 3 26 26 H 1.09000 * 109.47102 * 59.99274 * 1 2 3 27 27 H 1.09000 * 109.47614 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.42482 * 0.02562 * 4 3 2 29 29 H 1.07996 * 120.75182 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47567 * 345.60110 * 7 6 5 31 31 H 1.09005 * 109.46855 * 225.60220 * 7 6 5 32 32 H 1.08995 * 109.46049 * 54.14794 * 9 8 7 33 33 H 1.09004 * 109.46279 * 294.16850 * 9 8 7 34 34 H 1.08995 * 109.50624 * 179.12493 * 10 9 8 35 35 H 1.08998 * 109.50250 * 299.21007 * 10 9 8 36 36 H 1.08998 * 109.52359 * 62.24996 * 11 10 9 37 37 H 0.97000 * 120.00199 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.50471 * 177.59728 * 20 11 10 39 39 H 1.09005 * 109.50664 * 297.67611 * 20 11 10 40 40 H 1.09006 * 109.47304 * 65.83433 * 21 8 7 41 41 H 1.08997 * 109.45792 * 305.84904 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4324 1.2737 -0.0005 5 6 4.0492 2.5128 0.0000 6 6 3.2526 3.6491 0.0005 7 6 3.8801 5.0192 0.0006 8 7 3.7448 5.6197 -1.3332 9 6 4.5245 4.8725 -2.3283 10 6 4.2457 5.4354 -3.7238 11 6 4.6279 6.9178 -3.7567 12 6 4.3011 7.4922 -5.1110 13 1 3.8648 6.8637 -5.8733 14 6 4.5602 8.8199 -5.3775 15 7 5.0920 9.5852 -4.4496 16 14 4.1558 9.5318 -7.0566 17 1 2.7004 9.3910 -7.3164 18 1 4.5268 10.9693 -7.0871 19 1 4.9180 8.8011 -8.1007 20 6 3.8378 7.6646 -2.6785 21 6 4.1284 7.0371 -1.3133 22 6 1.8774 3.5104 0.0064 23 17 0.8729 4.9263 0.0150 24 7 1.3183 2.3141 0.0006 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 4.0222 0.3690 -0.0014 29 1 5.1262 2.5935 -0.0008 30 1 4.9365 4.9350 0.2557 31 1 3.3780 5.6488 0.7352 32 1 4.2400 3.8208 -2.2974 33 1 5.5869 4.9682 -2.1037 34 1 4.8363 4.8909 -4.4606 35 1 3.1860 5.3271 -3.9548 36 1 5.6956 7.0230 -3.5643 37 1 5.2739 10.5194 -4.6369 38 1 4.1369 8.7127 -2.6685 39 1 2.7715 7.5926 -2.8932 40 1 5.1927 7.1225 -1.0936 41 1 3.5561 7.5574 -0.5453 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237804564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:22:52 Heat of formation + Delta-G solvation = -10.126623 kcal Electronic energy + Delta-G solvation = -23555.643149 eV Core-core repulsion = 20075.504553 eV Total energy + Delta-G solvation = -3480.138595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87840 -38.71059 -37.73273 -36.39912 -34.33634 -32.72408 -31.77612 -30.46043 -29.60264 -27.74110 -26.32421 -24.53117 -23.64023 -22.42646 -21.83790 -21.01428 -18.70691 -18.52554 -17.49172 -16.40862 -16.23637 -15.58901 -15.27121 -15.09677 -14.73874 -14.49294 -13.98501 -13.81029 -13.66095 -13.39945 -12.93608 -12.51297 -12.28063 -12.18306 -11.99078 -11.93403 -11.57094 -11.32763 -11.04241 -10.91522 -10.87434 -10.73403 -10.47095 -10.18726 -9.96702 -9.94158 -9.88785 -9.40620 -8.92703 -8.69700 -8.47615 -8.25976 -7.74370 -5.94552 -3.99428 0.84544 1.02907 1.86487 2.88057 3.34901 3.39205 3.42439 3.45090 4.28102 4.44691 4.48289 4.65808 4.79175 4.92147 5.06188 5.11991 5.15626 5.35211 5.36281 5.45063 5.61679 5.73986 5.77439 5.87732 6.03521 6.10310 6.12309 6.23584 6.34151 6.62124 6.65266 6.88799 6.93631 7.10531 7.19040 7.45416 7.48713 7.63442 7.68739 7.85428 8.08680 8.18866 8.51921 9.03901 9.64739 11.11611 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.022300 B = 0.003339 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.320691 B = 8383.121806 C = 8455.789872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.307 6.307 3 C 0.332 3.668 4 C -0.189 4.189 5 C -0.027 4.027 6 C -0.141 4.141 7 C 0.097 3.903 8 N -0.525 5.525 9 C 0.061 3.939 10 C -0.105 4.105 11 C 0.050 3.950 12 C -0.510 4.510 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.893 5.893 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.103 4.103 21 C 0.060 3.940 22 C 0.235 3.765 23 Cl -0.009 7.009 24 N -0.539 5.539 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.024 0.976 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.259 0.741 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.023 0.977 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.455 -15.413 12.995 20.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.213 6.213 3 C 0.152 3.848 4 C -0.210 4.210 5 C -0.053 4.053 6 C -0.145 4.145 7 C -0.031 4.031 8 N -0.250 5.250 9 C -0.067 4.067 10 C -0.143 4.143 11 C 0.031 3.969 12 C -0.548 4.548 13 H 0.071 0.929 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.141 4.141 21 C -0.067 4.067 22 C 0.072 3.928 23 Cl 0.020 6.980 24 N -0.265 5.265 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.114 0.886 28 H 0.164 0.836 29 H 0.167 0.833 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.041 0.959 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.787 -15.449 12.877 20.928 hybrid contribution 1.061 0.698 -0.715 1.457 sum -4.726 -14.751 12.162 19.694 Atomic orbital electron populations 1.22882 0.77020 1.02938 1.02763 1.86241 1.23108 1.24086 1.87903 1.19555 0.89111 0.83752 0.92343 1.21069 0.91784 0.99643 1.08468 1.21353 1.00651 0.90188 0.93081 1.20412 0.92015 0.97376 1.04649 1.20912 0.98065 0.90587 0.93539 1.62028 1.56612 1.03214 1.03115 1.22131 0.94190 0.96432 0.93945 1.21660 1.00817 0.99299 0.92522 1.18663 0.95203 0.88723 0.94309 1.21178 1.40859 0.94899 0.97891 0.92887 1.24953 0.95134 0.97198 0.96668 1.69860 1.43939 1.06499 1.32886 0.86710 0.78838 0.77906 0.84838 1.20322 1.21397 1.20409 1.21654 0.99688 1.01987 0.90805 1.22268 0.97182 0.86385 1.00842 1.21068 0.88503 0.87318 0.95914 1.98432 1.69641 1.34086 1.95857 1.66558 1.41476 0.97871 1.20585 0.92220 0.92051 0.88582 0.83579 0.83347 0.93980 0.89634 0.92778 0.95779 0.93362 0.92582 0.96203 0.93085 0.88953 0.93761 0.95852 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.31 -3.51 10.48 -18.73 -0.20 -3.71 16 3 C 0.33 4.20 7.49 -17.12 -0.13 4.07 16 4 C -0.19 -2.03 10.04 -39.27 -0.39 -2.43 16 5 C -0.03 -0.29 9.14 -39.32 -0.36 -0.65 16 6 C -0.14 -1.84 4.41 -104.43 -0.46 -2.30 16 7 C 0.10 1.33 4.44 -4.98 -0.02 1.31 16 8 N -0.52 -8.93 4.53 -236.11 -1.07 -10.00 16 9 C 0.06 1.07 5.30 -3.83 -0.02 1.05 16 10 C -0.11 -2.22 5.32 -26.65 -0.14 -2.36 16 11 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 12 C -0.51 -14.04 8.56 -34.44 -0.29 -14.34 16 13 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 14 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 15 N -0.89 -25.33 11.37 55.43 0.63 -24.70 16 16 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.10 -2.40 5.12 -26.65 -0.14 -2.53 16 21 C 0.06 1.13 5.46 -3.83 -0.02 1.11 16 22 C 0.24 3.38 7.27 -17.46 -0.13 3.25 16 23 Cl -0.01 -0.13 27.69 -51.86 -1.44 -1.57 16 24 N -0.54 -7.61 9.19 -10.43 -0.10 -7.70 16 25 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 26 H 0.06 0.59 8.10 -51.93 -0.42 0.16 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.15 1.24 8.04 -52.49 -0.42 0.82 16 30 H 0.04 0.52 7.97 -51.93 -0.41 0.11 16 31 H 0.09 1.12 7.45 -51.93 -0.39 0.74 16 32 H 0.05 0.88 6.59 -51.93 -0.34 0.54 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.09 2.39 6.18 -51.93 -0.32 2.07 16 39 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.98 8.01 -51.93 -0.42 0.57 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -29.50 346.07 -9.39 -38.88 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -6.07 Total: -3.02 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -1.35 Total: -9.80 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: -0.53 Total: -42.40 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.20 Total: -3.71 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.44 Total: -1.57 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.50 -9.39 -38.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237804564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.757 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds