Wall clock time and date at job start Fri Apr 10 2020 22:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.29999 * 127.34024 * 2 1 4 4 O 1.20653 * 112.32165 * 179.97438 * 3 2 1 5 5 C 1.33465 * 113.17772 * 0.02562 * 4 3 2 6 6 C 1.50695 * 126.83993 * 179.97438 * 5 4 3 7 7 C 1.37444 * 106.32678 * 359.97438 * 5 4 3 8 8 C 1.47257 * 128.57495 * 179.97438 * 7 5 4 9 9 O 1.21531 * 119.99651 * 89.99210 * 8 7 5 10 10 O 1.34760 * 119.99644 * 269.99853 * 8 7 5 11 11 C 1.45205 * 116.99586 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.47096 * 329.99822 * 11 10 8 13 13 C 1.53000 * 109.46871 * 90.00150 * 11 10 8 14 14 C 1.50699 * 109.46829 * 209.99533 * 11 10 8 15 15 O 1.21279 * 120.00352 * 0.02562 * 14 11 10 16 16 N 1.34783 * 119.99948 * 179.97438 * 14 11 10 17 17 C 1.46497 * 119.99587 * 0.02562 * 16 14 11 18 18 C 1.46490 * 120.00210 * 180.02562 * 16 14 11 19 19 C 1.50699 * 109.47241 * 90.00188 * 18 16 14 20 20 H 1.07999 * 119.99937 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00211 * 180.02562 * 19 18 16 22 22 N 1.31511 * 119.99902 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00022 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46860 * 90.00397 * 23 21 19 25 25 H 1.48493 * 109.47463 * 210.00154 * 23 21 19 26 26 H 1.48505 * 109.47127 * 330.00696 * 23 21 19 27 27 H 1.08995 * 109.46946 * 90.02369 * 1 2 3 28 28 H 1.08998 * 109.47019 * 210.02672 * 1 2 3 29 29 H 1.09003 * 109.46732 * 330.02304 * 1 2 3 30 30 H 1.09006 * 109.47055 * 0.02562 * 6 5 4 31 31 H 1.08996 * 109.47662 * 120.02145 * 6 5 4 32 32 H 1.08998 * 109.47358 * 240.02431 * 6 5 4 33 33 H 1.09003 * 109.46917 * 299.99306 * 13 11 10 34 34 H 1.08993 * 109.47528 * 59.99937 * 13 11 10 35 35 H 1.09006 * 109.47145 * 180.02562 * 13 11 10 36 36 H 1.09001 * 109.47638 * 89.99812 * 17 16 14 37 37 H 1.09003 * 109.47252 * 209.99689 * 17 16 14 38 38 H 1.08998 * 109.47659 * 329.99431 * 17 16 14 39 39 H 1.08998 * 109.47736 * 210.00308 * 18 16 14 40 40 H 1.09001 * 109.47298 * 330.00287 * 18 16 14 41 41 H 0.97005 * 120.00211 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4609 0.7209 0.0005 5 6 3.6503 -0.6002 0.0004 6 6 4.9724 -1.3235 0.0003 7 6 2.3995 -1.1699 0.0003 8 6 2.0411 -2.5982 -0.0004 9 8 1.8935 -3.1880 1.0519 10 8 1.8768 -3.2510 -1.1678 11 6 1.5244 -4.6576 -1.0924 12 1 1.9463 -5.0898 -0.1851 13 6 0.0014 -4.8010 -1.0652 14 6 2.0754 -5.3786 -2.2956 15 8 2.7036 -4.7674 -3.1338 16 7 1.8709 -6.7030 -2.4397 17 6 1.1125 -7.4415 -1.4269 18 6 2.4069 -7.4040 -3.6090 19 6 3.7936 -7.9073 -3.3009 20 1 4.2316 -7.7238 -2.3309 21 6 4.5031 -8.6022 -4.2574 22 7 5.7130 -9.0418 -3.9883 23 14 3.7453 -8.9204 -5.9348 24 1 4.0853 -7.8026 -6.8516 25 1 4.2786 -10.1920 -6.4858 26 1 2.2697 -9.0192 -5.8007 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 5.7844 -0.5962 0.0009 31 1 5.0445 -1.9490 0.8900 32 1 5.0448 -1.9482 -0.8899 33 1 -0.3971 -4.2795 -0.1950 34 1 -0.4205 -4.3689 -1.9725 35 1 -0.2632 -5.8569 -1.0082 36 1 0.0544 -7.4345 -1.6885 37 1 1.4694 -8.4705 -1.3844 38 1 1.2494 -6.9690 -0.4542 39 1 1.7610 -8.2467 -3.8552 40 1 2.4489 -6.7189 -4.4557 41 1 6.2121 -9.5310 -4.6610 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007835980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:23:07 Heat of formation + Delta-G solvation = -47.489634 kcal Electronic energy + Delta-G solvation = -25988.729216 eV Core-core repulsion = 22066.261274 eV Total energy + Delta-G solvation = -3922.467942 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -45.15231 -40.71913 -39.10718 -36.54252 -35.14322 -34.90237 -33.89348 -32.89689 -31.72404 -29.12398 -28.50657 -28.24024 -26.47241 -25.50170 -24.14174 -22.34888 -21.18198 -20.33521 -19.02723 -18.49085 -17.98429 -17.25238 -17.01244 -16.63669 -16.11408 -15.83801 -15.39093 -14.85391 -14.44192 -13.91937 -13.84881 -13.77404 -13.57047 -13.46947 -13.40150 -13.04681 -12.96428 -12.73873 -12.50780 -12.42424 -12.33222 -11.90929 -11.65469 -11.42832 -11.36614 -11.03871 -10.95517 -10.83618 -10.57961 -10.22576 -10.20789 -9.68893 -9.61134 -9.10669 -8.64763 -7.86848 -6.14478 -4.14304 0.97919 1.56894 1.75465 2.22885 2.78485 3.09060 3.25283 3.31108 3.33207 3.63575 3.85367 3.92652 4.34301 4.48769 4.59541 4.66746 4.83348 4.91162 4.95548 5.12276 5.15827 5.16985 5.18641 5.24783 5.36356 5.39761 5.51368 5.52675 5.67519 5.68171 5.70875 5.86762 6.10290 6.16868 6.57744 6.83347 7.15981 7.47587 7.52831 7.92309 8.02686 8.38571 8.73869 8.88424 9.44802 10.98710 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.019528 B = 0.003406 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.486863 B = 8219.422383 C = 8887.478859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.066 3.934 3 N -0.354 5.354 4 O 0.099 5.901 5 C 0.044 3.956 6 C -0.089 4.089 7 C -0.241 4.241 8 C 0.555 3.445 9 O -0.490 6.490 10 O -0.313 6.313 11 C 0.069 3.931 12 H 0.110 0.890 13 C -0.177 4.177 14 C 0.512 3.488 15 O -0.517 6.517 16 N -0.590 5.590 17 C 0.074 3.926 18 C 0.217 3.783 19 C -0.533 4.533 20 H 0.075 0.925 21 C 0.074 3.926 22 N -0.895 5.895 23 Si 0.876 3.124 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.265 1.265 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.034 0.966 40 H 0.039 0.961 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.852 13.497 9.646 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 N -0.062 5.062 4 O 0.039 5.961 5 C -0.019 4.019 6 C -0.146 4.146 7 C -0.246 4.246 8 C 0.396 3.604 9 O -0.377 6.377 10 O -0.228 6.228 11 C 0.011 3.989 12 H 0.128 0.872 13 C -0.234 4.234 14 C 0.296 3.704 15 O -0.392 6.392 16 N -0.323 5.323 17 C -0.069 4.069 18 C 0.097 3.903 19 C -0.572 4.572 20 H 0.093 0.907 21 C -0.129 4.129 22 N -0.533 5.533 23 Si 0.703 3.297 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.190 1.190 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.581 14.806 9.396 20.481 hybrid contribution -0.321 -1.212 -0.707 1.440 sum -10.902 13.594 8.689 19.472 Atomic orbital electron populations 1.20276 0.84882 1.04325 1.04219 1.24685 0.98620 0.85933 1.00410 1.73603 0.89051 1.23062 1.20469 1.84550 1.21475 1.22254 1.67828 1.24703 0.97262 0.83644 0.96283 1.20655 0.88618 0.99731 1.05640 1.20794 0.93561 0.92159 1.18123 1.19583 0.73067 0.85549 0.82213 1.90873 1.46304 1.67852 1.32652 1.86762 1.79156 1.24360 1.32532 1.22682 0.97251 0.78641 1.00325 0.87190 1.22427 0.92281 1.05025 1.03659 1.19731 0.81196 0.82745 0.86738 1.90715 1.39520 1.66036 1.42972 1.47717 1.53446 1.06412 1.24774 1.21931 0.95116 0.98871 0.90999 1.19730 0.95057 0.91829 0.83663 1.21307 0.98431 1.35334 1.02104 0.90699 1.24851 0.94632 0.95026 0.98407 1.69891 1.10925 1.37613 1.34918 0.86849 0.79925 0.78126 0.84780 1.19826 1.20989 1.19020 0.89159 0.89791 0.89617 0.88653 0.88221 0.87532 0.91162 0.90859 0.88633 0.92835 0.89996 0.91918 0.94771 0.94341 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.49 36.01 0.38 -0.31 16 2 C 0.07 0.80 7.59 -79.75 -0.61 0.20 16 3 N -0.35 -4.54 12.01 34.79 0.42 -4.12 16 4 O 0.10 1.19 11.06 18.72 0.21 1.40 16 5 C 0.04 0.52 7.55 -34.60 -0.26 0.26 16 6 C -0.09 -0.79 10.33 36.00 0.37 -0.42 16 7 C -0.24 -3.23 6.37 -102.91 -0.66 -3.89 16 8 C 0.55 8.28 7.75 34.40 0.27 8.54 16 9 O -0.49 -7.82 16.37 -19.29 -0.32 -8.13 16 10 O -0.31 -5.16 9.43 -47.34 -0.45 -5.61 16 11 C 0.07 1.09 2.18 -27.88 -0.06 1.03 16 12 H 0.11 1.65 6.42 -51.93 -0.33 1.32 16 13 C -0.18 -2.06 9.19 37.16 0.34 -1.72 16 14 C 0.51 10.33 7.15 -10.98 -0.08 10.26 16 15 O -0.52 -12.75 16.08 -14.10 -0.23 -12.98 16 16 N -0.59 -11.64 2.86 -182.96 -0.52 -12.16 16 17 C 0.07 1.05 8.80 59.85 0.53 1.58 16 18 C 0.22 5.13 4.23 -5.20 -0.02 5.11 16 19 C -0.53 -14.95 9.94 -34.44 -0.34 -15.30 16 20 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 23 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 0.95 4.53 -51.93 -0.24 0.71 16 36 H 0.05 0.59 6.95 -51.93 -0.36 0.23 16 37 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 38 H 0.06 0.75 6.01 -51.93 -0.31 0.44 16 39 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 40 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -35.80 354.49 -5.04 -40.84 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.36 Total: -1.95 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.24 Total: 7.33 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.67 Total: -42.61 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.78 Total: -25.32 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.80 -5.04 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007835980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.649 kcal (2) G-P(sol) polarization free energy of solvation -35.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds