Wall clock time and date at job start Fri Apr 10 2020 22:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 N 1.29999 * 127.34024 * 2 1 4 4 O 1.20653 * 112.32165 * 179.97438 * 3 2 1 5 5 C 1.33465 * 113.17772 * 0.02562 * 4 3 2 6 6 C 1.50695 * 126.83993 * 179.97438 * 5 4 3 7 7 C 1.37444 * 106.32678 * 359.97438 * 5 4 3 8 8 C 1.47257 * 128.57495 * 179.97438 * 7 5 4 9 9 O 1.21531 * 119.99651 * 89.99210 * 8 7 5 10 10 O 1.34760 * 119.99644 * 269.99853 * 8 7 5 11 11 C 1.45205 * 116.99586 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.47096 * 329.99822 * 11 10 8 13 13 C 1.53000 * 109.46871 * 90.00150 * 11 10 8 14 14 C 1.50699 * 109.46829 * 209.99533 * 11 10 8 15 15 O 1.21279 * 120.00352 * 0.02562 * 14 11 10 16 16 N 1.34783 * 119.99948 * 179.97438 * 14 11 10 17 17 C 1.46497 * 119.99587 * 0.02562 * 16 14 11 18 18 C 1.46490 * 120.00210 * 180.02562 * 16 14 11 19 19 C 1.50699 * 109.47241 * 90.00188 * 18 16 14 20 20 H 1.07999 * 119.99937 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00211 * 180.02562 * 19 18 16 22 22 N 1.31511 * 119.99902 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00022 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46860 * 90.00397 * 23 21 19 25 25 H 1.48493 * 109.47463 * 210.00154 * 23 21 19 26 26 H 1.48505 * 109.47127 * 330.00696 * 23 21 19 27 27 H 1.08995 * 109.46946 * 90.02369 * 1 2 3 28 28 H 1.08998 * 109.47019 * 210.02672 * 1 2 3 29 29 H 1.09003 * 109.46732 * 330.02304 * 1 2 3 30 30 H 1.09006 * 109.47055 * 0.02562 * 6 5 4 31 31 H 1.08996 * 109.47662 * 120.02145 * 6 5 4 32 32 H 1.08998 * 109.47358 * 240.02431 * 6 5 4 33 33 H 1.09003 * 109.46917 * 299.99306 * 13 11 10 34 34 H 1.08993 * 109.47528 * 59.99937 * 13 11 10 35 35 H 1.09006 * 109.47145 * 180.02562 * 13 11 10 36 36 H 1.09001 * 109.47638 * 89.99812 * 17 16 14 37 37 H 1.09003 * 109.47252 * 209.99689 * 17 16 14 38 38 H 1.08998 * 109.47659 * 329.99431 * 17 16 14 39 39 H 1.08998 * 109.47736 * 210.00308 * 18 16 14 40 40 H 1.09001 * 109.47298 * 330.00287 * 18 16 14 41 41 H 0.97005 * 120.00211 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0336 0.0000 4 8 3.4609 0.7209 0.0005 5 6 3.6503 -0.6002 0.0004 6 6 4.9724 -1.3235 0.0003 7 6 2.3995 -1.1699 0.0003 8 6 2.0411 -2.5982 -0.0004 9 8 1.8935 -3.1880 1.0519 10 8 1.8768 -3.2510 -1.1678 11 6 1.5244 -4.6576 -1.0924 12 1 1.9463 -5.0898 -0.1851 13 6 0.0014 -4.8010 -1.0652 14 6 2.0754 -5.3786 -2.2956 15 8 2.7036 -4.7674 -3.1338 16 7 1.8709 -6.7030 -2.4397 17 6 1.1125 -7.4415 -1.4269 18 6 2.4069 -7.4040 -3.6090 19 6 3.7936 -7.9073 -3.3009 20 1 4.2316 -7.7238 -2.3309 21 6 4.5031 -8.6022 -4.2574 22 7 5.7130 -9.0418 -3.9883 23 14 3.7453 -8.9204 -5.9348 24 1 4.0853 -7.8026 -6.8516 25 1 4.2786 -10.1920 -6.4858 26 1 2.2697 -9.0192 -5.8007 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 5.7844 -0.5962 0.0009 31 1 5.0445 -1.9490 0.8900 32 1 5.0448 -1.9482 -0.8899 33 1 -0.3971 -4.2795 -0.1950 34 1 -0.4205 -4.3689 -1.9725 35 1 -0.2632 -5.8569 -1.0082 36 1 0.0544 -7.4345 -1.6885 37 1 1.4694 -8.4705 -1.3844 38 1 1.2494 -6.9690 -0.4542 39 1 1.7610 -8.2467 -3.8552 40 1 2.4489 -6.7189 -4.4557 41 1 6.2121 -9.5310 -4.6610 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007835980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:23:05 Heat of formation + Delta-G solvation = -70.885303 kcal Electronic energy + Delta-G solvation = -25989.743729 eV Core-core repulsion = 22066.261274 eV Total energy + Delta-G solvation = -3923.482454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.08653 -41.97828 -40.59890 -37.79747 -36.78903 -35.81388 -34.90508 -34.74422 -33.14265 -30.18597 -29.86203 -29.24005 -27.79879 -26.55777 -25.58089 -23.93017 -22.34340 -21.28409 -20.51304 -19.60250 -19.14575 -18.95927 -18.44273 -17.88363 -17.44721 -17.10294 -16.78635 -16.52026 -15.74873 -15.25664 -15.04645 -14.77248 -14.56178 -14.47485 -14.41227 -14.19488 -14.10859 -13.75652 -13.69199 -13.62571 -13.54790 -13.47716 -13.06859 -12.83621 -12.59136 -12.38239 -12.33219 -12.10472 -12.03523 -11.98852 -11.74703 -11.12820 -10.83298 -10.73474 -10.60757 -9.50868 -8.34037 -6.40056 0.01800 0.60626 0.62234 1.13221 1.34805 1.38879 1.46869 1.54583 1.80294 2.29248 2.31728 2.95059 3.00514 3.04350 3.31934 3.45699 3.67019 3.73764 3.81187 4.06565 4.29861 4.34478 4.43575 4.51454 4.53392 4.54786 4.61106 4.63138 4.68457 4.78465 4.85165 4.91554 4.95786 5.00942 5.06135 5.11348 5.43426 5.50988 6.19786 6.29700 6.51529 6.61640 6.99552 7.13215 7.27369 8.82764 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.019528 B = 0.003406 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.486863 B = 8219.422383 C = 8887.478859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.068 3.932 3 N -0.371 5.371 4 O 0.096 5.904 5 C 0.054 3.946 6 C -0.091 4.091 7 C -0.275 4.275 8 C 0.564 3.436 9 O -0.502 6.502 10 O -0.331 6.331 11 C 0.076 3.924 12 H 0.117 0.883 13 C -0.169 4.169 14 C 0.502 3.498 15 O -0.575 6.575 16 N -0.595 5.595 17 C 0.064 3.936 18 C 0.224 3.776 19 C -0.541 4.541 20 H 0.029 0.971 21 C 0.012 3.988 22 N -0.945 5.945 23 Si 0.947 3.053 24 H -0.277 1.277 25 H -0.276 1.276 26 H -0.233 1.233 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.022 0.978 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.463 13.522 9.786 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 N -0.081 5.081 4 O 0.039 5.961 5 C -0.010 4.010 6 C -0.147 4.147 7 C -0.280 4.280 8 C 0.406 3.594 9 O -0.390 6.390 10 O -0.246 6.246 11 C 0.018 3.982 12 H 0.134 0.866 13 C -0.225 4.225 14 C 0.289 3.711 15 O -0.455 6.455 16 N -0.327 5.327 17 C -0.077 4.077 18 C 0.102 3.898 19 C -0.579 4.579 20 H 0.047 0.953 21 C -0.186 4.186 22 N -0.584 5.584 23 Si 0.770 3.230 24 H -0.203 1.203 25 H -0.201 1.201 26 H -0.156 1.156 27 H 0.120 0.880 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.142 0.858 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.136 0.864 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.229 14.816 9.588 22.056 hybrid contribution 0.574 -1.200 -0.656 1.483 sum -12.655 13.617 8.932 20.624 Atomic orbital electron populations 1.20466 0.82583 1.05506 1.05298 1.25230 1.00066 0.85101 0.99045 1.73589 0.89324 1.23506 1.21639 1.84536 1.21421 1.22275 1.67901 1.25158 0.97829 0.83545 0.94433 1.20804 0.88335 1.00233 1.05372 1.20926 0.94811 0.91805 1.20453 1.19670 0.72356 0.85856 0.81517 1.90852 1.47037 1.68310 1.32832 1.86758 1.79516 1.24752 1.33605 1.22686 0.99786 0.78105 0.97646 0.86551 1.22460 0.88645 1.06802 1.04628 1.20571 0.80222 0.82870 0.87424 1.90675 1.42095 1.67344 1.45358 1.47786 1.53329 1.06681 1.24860 1.22324 0.96649 0.98022 0.90737 1.19437 0.93181 0.92277 0.84893 1.21555 1.00742 1.35297 1.00327 0.95288 1.25853 0.95016 0.94697 1.03063 1.70047 1.12799 1.38919 1.36677 0.85722 0.80863 0.77832 0.78587 1.20316 1.20132 1.15586 0.87996 0.89054 0.87965 0.85770 0.87382 0.88628 0.89238 0.90768 0.86442 0.88553 0.90635 0.89585 0.92113 0.96031 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.49 71.24 0.75 -0.51 16 2 C 0.07 1.59 7.59 45.17 0.34 1.94 16 3 N -0.37 -9.25 12.01 -44.74 -0.54 -9.79 16 4 O 0.10 2.27 11.06 77.24 0.85 3.12 16 5 C 0.05 1.25 7.55 25.50 0.19 1.44 16 6 C -0.09 -1.57 10.33 71.23 0.74 -0.83 16 7 C -0.27 -7.25 6.37 -18.75 -0.12 -7.37 16 8 C 0.56 16.49 7.75 70.19 0.54 17.03 16 9 O -0.50 -15.52 16.37 19.74 0.32 -15.20 16 10 O -0.33 -10.79 9.43 -50.31 -0.47 -11.27 16 11 C 0.08 2.28 2.18 29.85 0.07 2.34 16 12 H 0.12 3.34 6.42 -2.39 -0.02 3.32 16 13 C -0.17 -3.40 9.19 71.98 0.66 -2.74 16 14 C 0.50 20.25 7.15 87.66 0.63 20.88 16 15 O -0.58 -29.21 16.08 15.77 0.25 -28.95 16 16 N -0.59 -22.87 2.86 -851.16 -2.43 -25.30 16 17 C 0.06 1.63 8.80 127.77 1.12 2.75 16 18 C 0.22 10.43 4.23 85.63 0.36 10.80 16 19 C -0.54 -31.05 9.94 25.60 0.25 -30.80 16 20 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 21 C 0.01 0.69 5.47 84.66 0.46 1.15 16 22 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 23 Si 0.95 43.14 27.47 68.60 1.88 45.03 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.23 -9.31 6.54 99.48 0.65 -8.66 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.12 1.81 4.53 -2.38 -0.01 1.80 16 36 H 0.10 1.68 6.95 -2.39 -0.02 1.66 16 37 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 38 H 0.09 1.79 6.01 -2.39 -0.01 1.77 16 39 H 0.06 2.52 7.13 -2.39 -0.02 2.50 16 40 H 0.02 1.08 6.85 -2.39 -0.02 1.07 16 41 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -81.61 354.49 7.18 -74.43 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.01 Total: 10.36 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 6.00 Total: 16.09 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -2.67 Total: -93.61 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: 0.96 Total: -52.29 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.03 kcal Total: -81.61 7.18 -74.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007835980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.544 kcal (2) G-P(sol) polarization free energy of solvation -81.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds