Wall clock time and date at job start Fri Apr 10 2020 22:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 110.64107 * 2 1 4 4 C 1.34779 * 119.99485 * 56.86058 * 3 2 1 5 5 O 1.21571 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.47729 * 119.99795 * 180.02562 * 4 3 2 7 7 C 1.39647 * 120.10898 * 180.02562 * 6 4 3 8 8 C 1.37849 * 119.92485 * 179.97438 * 7 6 4 9 9 C 1.38604 * 120.15025 * 0.02562 * 8 7 6 10 10 F 1.35098 * 119.89288 * 179.97438 * 9 8 7 11 11 C 1.38835 * 120.22081 * 359.97438 * 9 8 7 12 12 F 1.35096 * 119.96848 * 179.72020 * 11 9 8 13 13 C 1.38067 * 120.06754 * 0.02562 * 11 9 8 14 14 C 1.55161 * 110.71634 * 236.86329 * 2 1 3 15 15 C 1.54911 * 101.57737 * 205.95199 * 14 2 1 16 16 N 1.47422 * 104.83124 * 37.01050 * 15 14 2 17 17 C 1.36940 * 125.64514 * 155.90304 * 16 15 14 18 18 H 1.08008 * 119.99669 * 179.97438 * 17 16 15 19 19 C 1.38809 * 120.00378 * 359.97438 * 17 16 15 20 20 N 1.31628 * 119.99726 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00183 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47148 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.46928 * 119.99948 * 21 19 17 24 24 H 1.48503 * 109.47007 * 239.99887 * 21 19 17 25 25 C 1.47018 * 108.70687 * 335.86831 * 16 15 14 26 26 H 1.08998 * 109.47443 * 60.69717 * 1 2 3 27 27 H 1.08997 * 109.47389 * 180.70079 * 1 2 3 28 28 H 1.09006 * 109.47418 * 300.69386 * 1 2 3 29 29 H 0.96991 * 120.00214 * 236.86439 * 3 2 1 30 30 H 1.08000 * 120.04163 * 359.95421 * 7 6 4 31 31 H 1.08005 * 119.92643 * 180.02562 * 8 7 6 32 32 H 1.08001 * 120.06782 * 179.97438 * 13 11 9 33 33 H 1.08992 * 111.00511 * 324.02719 * 14 2 1 34 34 H 1.09004 * 111.00245 * 87.84586 * 14 2 1 35 35 H 1.09002 * 110.36130 * 155.85072 * 15 14 2 36 36 H 1.09004 * 110.36871 * 278.17267 * 15 14 2 37 37 H 0.97003 * 119.99467 * 180.02562 * 20 19 17 38 38 H 1.09000 * 109.88745 * 241.64308 * 25 16 15 39 39 H 1.08999 * 109.88452 * 120.47501 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.6868 2.2265 0.9774 5 8 0.9335 1.8607 1.8587 6 6 2.2070 3.6091 0.9772 7 6 1.8363 4.4973 1.9890 8 6 2.3245 5.7864 1.9854 9 6 3.1820 6.2033 0.9794 10 9 3.6569 7.4680 0.9806 11 6 3.5546 5.3254 -0.0296 12 9 4.3862 5.7388 -1.0107 13 6 3.0710 4.0322 -0.0348 14 6 2.0788 -0.7933 -1.2153 15 6 3.4651 -1.2445 -0.6915 16 7 3.2494 -1.5469 0.7351 17 6 4.0125 -2.3918 1.4961 18 1 3.7714 -2.5469 2.5374 19 6 5.0959 -3.0490 0.9292 20 7 5.3893 -2.8603 -0.3400 21 14 6.1372 -4.2009 1.9674 22 1 5.6025 -4.2389 3.3522 23 1 6.0977 -5.5656 1.3834 24 1 7.5398 -3.7135 1.9921 25 6 2.0799 -0.7906 1.2058 26 1 -0.3634 0.5029 -0.8961 27 1 -0.3634 -1.0275 0.0126 28 1 -0.3634 0.5246 0.8837 29 1 2.6470 1.6630 -0.7034 30 1 1.1677 4.1747 2.7734 31 1 2.0381 6.4732 2.7682 32 1 3.3605 3.3494 -0.8199 33 1 1.4468 -1.6528 -1.4385 34 1 2.1813 -0.1490 -2.0885 35 1 3.7992 -2.1362 -1.2221 36 1 4.1929 -0.4407 -0.8031 37 1 6.1462 -3.3198 -0.7362 38 1 2.3775 -0.1016 1.9963 39 1 1.3191 -1.4773 1.5769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046374607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:18 Heat of formation + Delta-G solvation = -65.804607 kcal Electronic energy + Delta-G solvation = -25593.510122 eV Core-core repulsion = 21559.160467 eV Total energy + Delta-G solvation = -4034.349654 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.77043 -48.83807 -40.46109 -38.71954 -37.15728 -34.16987 -32.46846 -31.12423 -30.79394 -29.72273 -28.70922 -25.73560 -24.55443 -23.72157 -23.26640 -21.10148 -20.37782 -19.19621 -18.67031 -17.71070 -17.34025 -16.88407 -16.61442 -16.45555 -15.56796 -15.24678 -14.81948 -14.79601 -14.71033 -14.61967 -14.18848 -13.75305 -13.53844 -13.06173 -12.87017 -12.70453 -12.48291 -12.25139 -11.97006 -11.80169 -11.72029 -11.59176 -10.96724 -10.89350 -10.50592 -10.39298 -10.08831 -10.06527 -9.71516 -9.50995 -9.43937 -9.08346 -8.76225 -8.66577 -6.84605 -5.67909 -3.08510 0.24135 0.63802 2.52206 3.16220 3.38857 3.39237 3.45092 3.47357 3.47635 3.96690 4.15525 4.40144 4.48329 4.62886 4.78600 5.07084 5.28995 5.33470 5.35252 5.44252 5.45225 5.52232 5.65764 5.68902 5.83167 5.97901 6.11932 6.17115 6.28332 6.32508 6.40183 6.45792 6.63740 6.76057 7.03343 7.40122 7.60111 7.66284 7.80354 8.28596 8.33712 9.20469 9.81142 10.45263 11.36520 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.015875 B = 0.003652 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.392208 B = 7665.626560 C = 8305.304173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.158 3.842 3 N -0.699 5.699 4 C 0.560 3.440 5 O -0.527 6.527 6 C -0.107 4.107 7 C -0.042 4.042 8 C -0.133 4.133 9 C 0.086 3.914 10 F -0.126 7.126 11 C 0.063 3.937 12 F -0.125 7.125 13 C -0.093 4.093 14 C -0.147 4.147 15 C 0.151 3.849 16 N -0.604 5.604 17 C -0.218 4.218 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.924 5.924 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.137 3.863 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.397 0.603 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.010 0.990 37 H 0.251 0.749 38 H 0.031 0.969 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.002 16.383 -1.321 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.073 3.927 3 N -0.350 5.350 4 C 0.346 3.654 5 O -0.404 6.404 6 C -0.111 4.111 7 C -0.061 4.061 8 C -0.152 4.152 9 C 0.066 3.934 10 F -0.104 7.104 11 C 0.043 3.957 12 F -0.103 7.103 13 C -0.113 4.113 14 C -0.186 4.186 15 C 0.027 3.973 16 N -0.330 5.330 17 C -0.347 4.347 18 H 0.096 0.904 19 C -0.207 4.207 20 N -0.573 5.573 21 Si 0.745 3.255 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.011 3.989 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.233 0.767 30 H 0.173 0.827 31 H 0.171 0.829 32 H 0.169 0.831 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.028 0.972 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.306 16.005 -0.744 18.048 hybrid contribution 1.337 -0.001 -0.076 1.340 sum -6.969 16.005 -0.821 17.475 Atomic orbital electron populations 1.22069 0.93877 1.02496 1.02585 1.21429 0.93263 0.79807 0.98231 1.45950 1.49081 1.12264 1.27669 1.17881 0.81201 0.84169 0.82176 1.90754 1.35855 1.77625 1.36207 1.20044 0.99360 0.95425 0.96229 1.21241 0.96822 0.90918 0.97117 1.21081 0.97954 0.97632 0.98504 1.17931 0.98726 0.79959 0.96817 1.91546 1.86586 1.36093 1.96198 1.17468 0.96067 0.93533 0.88636 1.91560 1.68926 1.90464 1.59400 1.21305 0.96455 0.93918 0.99623 1.23378 1.01317 0.98917 0.94982 1.21955 0.89311 1.00713 0.85368 1.44508 1.30598 1.50514 1.07395 1.19144 1.05949 1.16592 0.92997 0.90449 1.24759 0.98757 1.00726 0.96452 1.69783 1.30134 1.46554 1.10859 0.85999 0.80035 0.80354 0.79156 1.20518 1.21725 1.21805 1.21597 0.90371 0.93192 0.93751 0.93100 0.91627 0.90455 0.76733 0.82683 0.82935 0.83115 0.90318 0.91844 0.87336 0.97186 0.93828 0.95120 0.94975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.38 37.16 0.31 -1.95 16 2 C 0.16 2.69 0.81 -129.98 -0.10 2.58 16 3 N -0.70 -10.36 5.09 -46.87 -0.24 -10.60 16 4 C 0.56 8.31 6.98 -12.38 -0.09 8.22 16 5 O -0.53 -9.17 13.34 5.30 0.07 -9.10 16 6 C -0.11 -1.27 5.87 -104.98 -0.62 -1.89 16 7 C -0.04 -0.42 9.59 -39.20 -0.38 -0.80 16 8 C -0.13 -1.16 10.01 -39.59 -0.40 -1.55 16 9 C 0.09 0.90 7.31 -39.23 -0.29 0.61 16 10 F -0.13 -1.38 17.17 2.25 0.04 -1.34 16 11 C 0.06 0.70 7.30 -39.42 -0.29 0.41 16 12 F -0.13 -1.50 17.17 2.25 0.04 -1.47 16 13 C -0.09 -1.00 9.51 -39.13 -0.37 -1.38 16 14 C -0.15 -2.54 6.07 -24.58 -0.15 -2.69 16 15 C 0.15 3.48 5.87 -2.53 -0.01 3.46 16 16 N -0.60 -15.27 3.39 -170.07 -0.58 -15.85 16 17 C -0.22 -6.09 10.27 -15.06 -0.15 -6.25 16 18 H 0.08 2.13 7.83 -52.48 -0.41 1.71 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -26.42 10.09 55.49 0.56 -25.86 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.14 2.96 6.20 -3.07 -0.02 2.94 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 28 H 0.08 1.23 6.03 -51.93 -0.31 0.92 16 29 H 0.40 5.05 6.52 -40.82 -0.27 4.78 16 30 H 0.16 1.46 7.65 -52.49 -0.40 1.06 16 31 H 0.15 0.91 8.06 -52.48 -0.42 0.48 16 32 H 0.15 1.40 6.40 -52.49 -0.34 1.06 16 33 H 0.08 1.34 8.05 -51.93 -0.42 0.93 16 34 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 35 H 0.11 2.84 5.87 -51.93 -0.31 2.53 16 36 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.03 0.71 6.90 -51.93 -0.36 0.36 16 39 H 0.03 0.70 7.81 -51.93 -0.41 0.30 16 LS Contribution 328.69 15.07 4.95 4.95 Total: -1.00 -31.30 328.69 -7.28 -38.58 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.46 Total: 2.34 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.65 Total: 1.30 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.26 Total: -52.30 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.07 Total: -9.10 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.81 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.30 -7.28 -38.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046374607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.220 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds