Wall clock time and date at job start Fri Apr 10 2020 22:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34771 * 119.99593 * 2 1 4 4 O 1.21566 * 120.00239 * 184.30079 * 3 2 1 5 5 C 1.47729 * 120.00358 * 4.29428 * 3 2 1 6 6 C 1.39653 * 120.11065 * 148.51662 * 5 3 2 7 7 C 1.37846 * 119.92932 * 180.02562 * 6 5 3 8 8 C 1.38610 * 120.14631 * 0.02562 * 7 6 5 9 9 F 1.35102 * 119.89374 * 179.97438 * 8 7 6 10 10 C 1.38832 * 120.22005 * 0.02562 * 8 7 6 11 11 F 1.35100 * 119.96866 * 179.97438 * 10 8 7 12 12 C 1.38060 * 120.07222 * 359.67558 * 10 8 7 13 13 C 1.46495 * 120.00223 * 179.97438 * 2 1 3 14 14 H 1.08997 * 110.63905 * 181.68978 * 13 2 1 15 15 C 1.55159 * 110.72307 * 305.02581 * 13 2 1 16 16 C 1.54904 * 101.58392 * 153.86264 * 15 13 2 17 17 N 1.47429 * 104.83450 * 322.99327 * 16 15 13 18 18 C 1.36931 * 125.65046 * 204.08808 * 17 16 15 19 19 H 1.08005 * 119.99772 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99993 * 0.04308 * 18 17 16 21 21 N 1.31615 * 120.00255 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00035 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47022 * 60.00422 * 22 20 18 24 24 H 1.48502 * 109.47109 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47542 * 300.00522 * 22 20 18 26 26 C 1.47031 * 108.69947 * 24.12760 * 17 16 15 27 27 H 1.09005 * 109.47326 * 94.18061 * 1 2 3 28 28 H 1.09005 * 109.47266 * 214.18043 * 1 2 3 29 29 H 1.08996 * 109.47884 * 334.17978 * 1 2 3 30 30 H 1.08007 * 120.03520 * 359.97438 * 6 5 3 31 31 H 1.07999 * 119.92823 * 179.97438 * 7 6 5 32 32 H 1.08000 * 120.08011 * 180.32737 * 12 10 8 33 33 H 1.08994 * 111.00614 * 271.94560 * 15 13 2 34 34 H 1.08998 * 111.00037 * 35.79237 * 15 13 2 35 35 H 1.08996 * 110.37194 * 204.15399 * 16 15 13 36 36 H 1.09004 * 110.45759 * 81.87374 * 16 15 13 37 37 H 0.96998 * 120.00359 * 179.97438 * 21 20 18 38 38 H 1.09004 * 109.87928 * 239.52293 * 26 17 16 39 39 H 1.08996 * 109.87999 * 118.36305 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3519 1.1688 -0.0789 5 6 1.4032 2.4448 0.0958 6 6 1.9863 3.5429 0.7318 7 6 1.2964 4.7330 0.8195 8 6 0.0250 4.8422 0.2783 9 9 -0.6468 6.0109 0.3677 10 6 -0.5609 3.7541 -0.3544 11 9 -1.8006 3.8660 -0.8796 12 6 0.1243 2.5596 -0.4528 13 6 2.1975 -1.2687 0.0006 14 1 3.2726 -1.0915 0.0306 15 6 1.7508 -2.1601 1.1893 16 6 2.0639 -3.5780 0.6498 17 7 1.7325 -3.5173 -0.7855 18 6 1.4006 -4.5866 -1.5738 19 1 1.1740 -4.4371 -2.6192 20 6 1.3550 -5.8627 -1.0294 21 7 1.6313 -6.0449 0.2445 22 14 0.9016 -7.3213 -2.1046 23 1 1.8797 -7.4401 -3.2158 24 1 0.9252 -8.5629 -1.2902 25 1 -0.4597 -7.1206 -2.6629 26 6 1.8184 -2.1186 -1.2304 27 1 -0.3634 -0.0749 -1.0250 28 1 -0.3634 -0.8502 0.5774 29 1 -0.3635 0.9250 0.4476 30 1 2.9764 3.4595 1.1552 31 1 1.7471 5.5821 1.3117 32 1 -0.3292 1.7147 -0.9496 33 1 2.3372 -1.9434 2.0822 34 1 0.6850 -2.0435 1.3861 35 1 1.4432 -4.3204 1.1513 36 1 3.1196 -3.8128 0.7857 37 1 1.5991 -6.9365 0.6251 38 1 0.8542 -1.7943 -1.6220 39 1 2.5849 -2.0205 -1.9991 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033144939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:24:04 Heat of formation + Delta-G solvation = -40.557555 kcal Electronic energy + Delta-G solvation = -25359.674317 eV Core-core repulsion = 21326.419457 eV Total energy + Delta-G solvation = -4033.254860 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.84670 -48.91527 -40.69882 -38.59017 -37.29005 -35.11590 -32.53775 -31.34906 -30.86116 -29.22550 -27.70942 -26.95399 -24.82916 -23.87245 -23.45329 -20.97056 -20.28576 -19.29084 -18.19024 -18.08144 -17.45617 -17.01152 -16.75715 -16.50677 -15.96437 -15.33687 -15.21556 -14.95421 -14.75209 -14.51135 -14.22434 -14.15876 -13.62118 -13.21974 -13.07680 -12.82528 -12.56167 -12.46524 -12.15564 -11.90727 -11.65236 -11.43300 -11.10149 -10.92179 -10.82906 -10.50709 -10.18548 -9.93377 -9.88099 -9.61654 -9.46600 -9.16391 -8.70617 -8.50682 -6.90472 -5.70485 -3.13021 0.18553 0.53849 2.40240 2.87082 3.15838 3.34355 3.37888 3.42452 3.43551 3.88089 4.03602 4.22655 4.45525 4.51574 4.59528 4.98213 5.14326 5.25424 5.28429 5.35377 5.37163 5.45032 5.48723 5.54607 5.61567 5.64447 5.73982 5.83577 6.11555 6.22565 6.29435 6.45651 6.49233 6.62011 6.85807 7.36947 7.44983 7.56518 7.78279 8.05901 8.29428 9.16040 9.76578 10.40205 11.33289 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.028549 B = 0.002941 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.540923 B = 9519.343124 C =10087.484124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.589 5.589 3 C 0.556 3.444 4 O -0.532 6.532 5 C -0.106 4.106 6 C -0.044 4.044 7 C -0.133 4.133 8 C 0.086 3.914 9 F -0.126 7.126 10 C 0.060 3.940 11 F -0.125 7.125 12 C -0.109 4.109 13 C 0.125 3.875 14 H 0.106 0.894 15 C -0.153 4.153 16 C 0.153 3.847 17 N -0.602 5.602 18 C -0.224 4.224 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.916 3.084 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.130 3.870 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.169 0.831 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.016 0.984 37 H 0.253 0.747 38 H 0.028 0.972 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.820 20.609 3.119 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.320 5.320 3 C 0.344 3.656 4 O -0.409 6.409 5 C -0.110 4.110 6 C -0.063 4.063 7 C -0.151 4.151 8 C 0.066 3.934 9 F -0.104 7.104 10 C 0.040 3.960 11 F -0.103 7.103 12 C -0.128 4.128 13 C 0.023 3.977 14 H 0.124 0.876 15 C -0.192 4.192 16 C 0.028 3.972 17 N -0.329 5.329 18 C -0.353 4.353 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.571 5.571 22 Si 0.746 3.254 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.211 1.211 26 C 0.003 3.997 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.170 0.830 31 H 0.171 0.829 32 H 0.186 0.814 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.034 0.966 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.282 20.385 3.069 20.874 hybrid contribution -0.683 -0.473 -0.708 1.091 sum -3.965 19.912 2.361 20.439 Atomic orbital electron populations 1.22486 0.79986 1.04054 1.02374 1.47759 1.07043 1.05905 1.71298 1.18039 0.87062 0.83153 0.77348 1.90805 1.13195 1.86931 1.50012 1.19915 0.94092 0.95525 1.01437 1.21183 1.00057 0.89943 0.95120 1.21061 0.92512 0.99910 1.01666 1.17951 0.92292 0.81526 1.01668 1.91551 1.79736 1.44896 1.94225 1.17503 0.82695 0.94294 1.01486 1.91563 1.38016 1.96453 1.84282 1.21985 0.94074 0.96943 0.99757 1.22349 0.97130 0.80843 0.97413 0.87569 1.23413 1.00760 0.98727 0.96327 1.21948 0.99022 0.91709 0.84525 1.44424 1.81080 1.00687 1.06662 1.19020 1.39149 0.84964 0.92126 0.90491 1.24787 1.01872 0.97409 0.96426 1.69759 1.55292 1.21017 1.11007 0.86135 0.78283 0.81824 0.79134 1.21172 1.21531 1.21127 1.21509 0.98047 0.86298 0.93862 0.91608 0.89717 0.89937 0.83026 0.82919 0.81379 0.91886 0.91511 0.87210 0.96617 0.93578 0.95455 0.95567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 7.79 59.85 0.47 1.06 16 2 N -0.59 -8.45 2.88 -173.00 -0.50 -8.95 16 3 C 0.56 7.94 7.44 -12.38 -0.09 7.85 16 4 O -0.53 -9.32 16.12 5.31 0.09 -9.24 16 5 C -0.11 -1.15 5.48 -104.97 -0.57 -1.73 16 6 C -0.04 -0.40 9.59 -39.20 -0.38 -0.77 16 7 C -0.13 -1.01 10.01 -39.59 -0.40 -1.41 16 8 C 0.09 0.80 7.31 -39.22 -0.29 0.51 16 9 F -0.13 -1.26 17.17 2.25 0.04 -1.22 16 10 C 0.06 0.59 7.30 -39.43 -0.29 0.31 16 11 F -0.12 -1.34 17.18 2.25 0.04 -1.30 16 12 C -0.11 -1.04 7.41 -39.13 -0.29 -1.33 16 13 C 0.13 2.21 3.36 -66.10 -0.22 1.99 16 14 H 0.11 2.02 7.00 -51.93 -0.36 1.65 16 15 C -0.15 -2.77 6.62 -24.58 -0.16 -2.93 16 16 C 0.15 3.59 5.89 -2.53 -0.01 3.58 16 17 N -0.60 -15.00 3.39 -170.07 -0.58 -15.58 16 18 C -0.22 -6.12 10.27 -15.06 -0.15 -6.27 16 19 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -26.24 10.09 55.49 0.56 -25.68 16 22 Si 0.92 21.66 29.55 -169.99 -5.02 16.63 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.13 2.67 6.88 -3.06 -0.02 2.64 16 27 H 0.07 0.68 7.00 -51.93 -0.36 0.32 16 28 H 0.08 1.02 6.07 -51.93 -0.32 0.70 16 29 H 0.08 0.74 4.73 -51.93 -0.25 0.49 16 30 H 0.15 1.24 7.94 -52.48 -0.42 0.83 16 31 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.17 1.44 4.77 -52.49 -0.25 1.19 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.14 6.07 -51.93 -0.32 0.82 16 35 H 0.11 2.88 5.87 -51.93 -0.31 2.58 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.03 0.54 6.84 -51.93 -0.35 0.18 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -30.99 323.47 -7.18 -38.17 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.17 Total: -0.86 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -2.51 Total: 3.14 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.52 Total: -50.21 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.08 Total: -2.52 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.99 -7.18 -38.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033144939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.387 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds