Wall clock time and date at job start Fri Apr 10 2020 22:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.92096 * 2 1 4 4 C 1.54905 * 111.00713 * 236.09324 * 2 1 3 5 5 N 1.47424 * 104.83626 * 204.92109 * 4 2 1 6 6 C 1.36937 * 125.64648 * 204.09027 * 5 4 2 7 7 H 1.08000 * 120.00374 * 0.02562 * 6 5 4 8 8 C 1.38817 * 120.00043 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99591 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00208 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.46826 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46895 * 120.00247 * 10 8 6 13 13 H 1.48496 * 109.47096 * 240.00068 * 10 8 6 14 14 C 1.47014 * 108.70467 * 24.12471 * 5 4 2 15 15 C 1.54327 * 107.26927 * 358.94389 * 14 5 4 16 16 H 1.09005 * 110.71973 * 96.35058 * 15 14 5 17 17 N 1.46500 * 110.72013 * 219.43892 * 15 14 5 18 18 C 1.34772 * 120.00646 * 273.54759 * 17 15 14 19 19 O 1.21569 * 119.99508 * 0.02562 * 18 17 15 20 20 C 1.47727 * 120.00442 * 179.97438 * 18 17 15 21 21 C 1.39656 * 120.10595 * 359.97438 * 20 18 17 22 22 C 1.37851 * 119.92226 * 180.02562 * 21 20 18 23 23 C 1.38611 * 120.14707 * 0.02592 * 22 21 20 24 24 F 1.35107 * 119.88794 * 179.97438 * 23 22 21 25 25 C 1.38840 * 120.22274 * 359.67242 * 23 22 21 26 26 F 1.35091 * 119.96562 * 180.32256 * 25 23 22 27 27 C 1.38058 * 120.06828 * 0.60782 * 25 23 22 28 28 H 1.09004 * 109.46585 * 296.10542 * 1 2 3 29 29 H 1.08996 * 109.46667 * 56.10029 * 1 2 3 30 30 H 1.08993 * 109.47167 * 176.10381 * 1 2 3 31 31 H 1.08997 * 110.36858 * 86.07730 * 4 2 1 32 32 H 1.09005 * 110.45989 * 323.80549 * 4 2 1 33 33 H 0.97004 * 119.99822 * 179.97438 * 9 8 6 34 34 H 1.08996 * 109.88780 * 239.52973 * 14 5 4 35 35 H 1.09003 * 110.01336 * 118.42736 * 14 5 4 36 36 H 0.97005 * 119.99979 * 93.54597 * 17 15 14 37 37 H 1.07989 * 120.03703 * 359.97438 * 21 20 18 38 38 H 1.08001 * 119.92720 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.07555 * 179.70017 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4271 -1.2432 -0.7732 6 6 4.4640 -1.5669 -1.6070 7 1 4.3333 -1.5120 -2.6777 8 6 5.6831 -1.9658 -1.0762 9 7 5.8421 -2.0332 0.2287 10 14 7.0977 -2.4067 -2.2136 11 1 6.6651 -2.2493 -3.6254 12 1 8.2477 -1.5062 -1.9453 13 1 7.5050 -3.8145 -1.9741 14 6 3.4675 -1.2742 0.6961 15 6 2.0861 -0.8078 1.2023 16 1 1.4478 -1.6632 1.4241 17 7 2.2286 0.0496 2.3815 18 6 2.3021 -0.5002 3.6098 19 8 2.2506 -1.7079 3.7391 20 6 2.4464 0.3644 4.7988 21 6 2.5074 1.7520 4.6527 22 6 2.6426 2.5553 5.7648 23 6 2.7186 1.9888 7.0276 24 9 2.8516 2.7810 8.1140 25 6 2.6523 0.6104 7.1804 26 9 2.7204 0.0643 8.4141 27 6 2.5228 -0.2029 6.0724 28 1 -0.3633 0.4522 0.9229 29 1 -0.3632 0.5732 -0.8530 30 1 -0.3633 -1.0252 -0.0698 31 1 2.1560 -0.1722 -2.0836 32 1 1.4525 -1.6705 -1.4042 33 1 6.6939 -2.3122 0.5996 34 1 4.2425 -0.5998 1.0600 35 1 3.6661 -2.2884 1.0426 36 1 2.2701 1.0133 2.2783 37 1 2.4496 2.1951 3.6696 38 1 2.6893 3.6283 5.6520 39 1 2.4761 -1.2754 6.1908 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079847555.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:26:44 Heat of formation + Delta-G solvation = -71.763867 kcal Electronic energy + Delta-G solvation = -25203.269054 eV Core-core repulsion = 21168.660987 eV Total energy + Delta-G solvation = -4034.608067 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -49.74719 -48.81397 -40.24258 -38.52545 -37.33685 -34.09587 -32.78140 -31.33430 -30.82063 -30.40986 -27.77825 -25.69100 -24.52414 -23.42874 -23.28043 -20.97095 -20.16763 -19.79115 -18.48274 -17.71739 -17.36030 -16.93705 -16.58850 -16.29424 -15.82601 -15.22425 -15.03490 -14.75653 -14.49820 -14.48645 -14.32383 -13.75941 -13.32102 -13.19091 -12.98076 -12.79855 -12.73615 -12.35503 -11.96784 -11.74005 -11.63859 -11.38884 -11.06427 -10.81697 -10.68721 -10.42145 -10.03300 -9.95142 -9.83325 -9.70105 -9.45059 -9.08740 -8.66144 -8.57117 -6.86258 -5.71597 -3.06953 0.26824 0.66815 2.56413 3.16210 3.39343 3.44493 3.46072 3.47521 3.53523 4.02744 4.20850 4.46553 4.53554 4.55686 4.76483 4.99023 5.25044 5.32966 5.37631 5.44758 5.50086 5.52550 5.61050 5.70111 5.80771 5.92062 5.93558 6.08925 6.13442 6.29126 6.34482 6.43075 6.58133 6.65285 6.86732 7.48872 7.55288 7.75214 7.83091 8.22837 8.37731 9.19396 9.80100 10.44367 11.39195 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.003404 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.624347 B = 8223.615415 C = 9123.223162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.231 4.231 7 H 0.080 0.920 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.173 3.827 15 C 0.120 3.880 16 H 0.090 0.910 17 N -0.703 5.703 18 C 0.556 3.444 19 O -0.525 6.525 20 C -0.104 4.104 21 C -0.068 4.068 22 C -0.131 4.131 23 C 0.085 3.915 24 F -0.126 7.126 25 C 0.062 3.938 26 F -0.126 7.126 27 C -0.069 4.069 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.023 0.977 33 H 0.252 0.748 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.395 0.605 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.373 11.026 10.090 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.359 4.359 7 H 0.098 0.902 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.047 3.953 15 C 0.015 3.985 16 H 0.108 0.892 17 N -0.354 5.354 18 C 0.341 3.659 19 O -0.402 6.402 20 C -0.108 4.108 21 C -0.087 4.087 22 C -0.150 4.150 23 C 0.065 3.935 24 F -0.105 7.105 25 C 0.041 3.959 26 F -0.104 7.104 27 C -0.088 4.088 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.230 0.770 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.176 10.068 10.254 17.609 hybrid contribution 1.002 0.314 -0.082 1.053 sum -9.175 10.382 10.173 17.188 Atomic orbital electron populations 1.21709 0.94940 1.01915 1.01028 1.22618 0.94881 0.99507 0.96322 0.90384 1.21590 0.87652 0.95059 0.94282 1.44409 1.07880 1.79233 1.01746 1.19096 0.89274 1.38601 0.88959 0.90241 1.24828 0.97894 1.01631 0.96002 1.69977 1.24167 1.53235 1.09207 0.86052 0.82364 0.77816 0.79567 1.20484 1.21786 1.21708 1.21479 0.89837 1.00563 0.83411 1.22577 1.00589 0.92698 0.82590 0.89238 1.45834 1.73442 1.10258 1.05834 1.17895 0.77445 0.87641 0.82878 1.90823 1.49260 1.14064 1.86043 1.20004 1.03266 0.93662 0.93828 1.21293 0.96052 0.92070 0.99254 1.21009 1.02478 1.01821 0.89679 1.17918 1.04330 0.86769 0.84519 1.91546 1.93065 1.73206 1.52654 1.17500 1.07326 0.89757 0.81274 1.91550 1.93921 1.85772 1.39155 1.21211 0.96293 1.01852 0.89457 0.93078 0.92699 0.92505 0.93924 0.95966 0.93737 0.93115 0.93261 0.76985 0.83657 0.82983 0.82157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.31 37.16 0.35 -1.33 16 2 C -0.11 -1.75 3.25 -88.47 -0.29 -2.04 16 3 H 0.08 1.13 8.00 -51.93 -0.42 0.71 16 4 C 0.14 2.73 6.70 -2.53 -0.02 2.72 16 5 N -0.61 -15.10 3.39 -170.08 -0.58 -15.68 16 6 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 7 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 9 N -0.92 -27.18 10.31 55.49 0.57 -26.61 16 10 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 C 0.17 4.15 5.12 -3.07 -0.02 4.13 16 15 C 0.12 2.15 2.70 -66.09 -0.18 1.97 16 16 H 0.09 1.71 7.60 -51.93 -0.39 1.32 16 17 N -0.70 -10.30 5.08 -53.01 -0.27 -10.57 16 18 C 0.56 8.76 7.77 -12.39 -0.10 8.66 16 19 O -0.53 -10.46 16.07 5.31 0.09 -10.38 16 20 C -0.10 -1.27 5.87 -104.97 -0.62 -1.89 16 21 C -0.07 -0.61 9.53 -39.19 -0.37 -0.98 16 22 C -0.13 -1.08 10.01 -39.59 -0.40 -1.48 16 23 C 0.09 0.89 7.31 -39.22 -0.29 0.60 16 24 F -0.13 -1.39 17.18 2.25 0.04 -1.35 16 25 C 0.06 0.71 7.30 -39.42 -0.29 0.43 16 26 F -0.13 -1.56 17.17 2.25 0.04 -1.52 16 27 C -0.07 -0.83 9.57 -39.13 -0.37 -1.21 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.02 0.44 7.99 -51.93 -0.41 0.02 16 33 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.05 1.34 7.27 -51.93 -0.38 0.96 16 35 H 0.05 1.39 7.50 -51.93 -0.39 1.00 16 36 H 0.40 4.41 6.54 -40.82 -0.27 4.15 16 37 H 0.15 0.93 6.40 -52.49 -0.34 0.59 16 38 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.16 1.99 7.65 -52.49 -0.40 1.59 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -32.81 335.93 -7.56 -40.37 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -4.65 Total: 0.87 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.83 Total: 2.79 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.27 Total: -52.86 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.08 Total: -2.87 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.81 -7.56 -40.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079847555.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.397 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds