Wall clock time and date at job start Fri Apr 10 2020 22:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00195 * 2 1 4 4 C 1.52998 * 109.47319 * 264.92711 * 3 2 1 5 5 H 1.08998 * 112.96389 * 294.11298 * 4 3 2 6 6 C 1.53944 * 113.76954 * 65.78526 * 4 3 2 7 7 C 1.53942 * 86.28930 * 137.91150 * 6 4 3 8 8 N 1.47574 * 113.76848 * 162.42838 * 4 3 2 9 9 C 1.36936 * 134.49461 * 41.07198 * 8 4 3 10 10 H 1.07999 * 119.99893 * 4.67669 * 9 8 4 11 11 C 1.38811 * 120.00267 * 184.67016 * 9 8 4 12 12 N 1.31621 * 119.99888 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00178 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46808 * 60.00838 * 13 11 9 15 15 H 1.48497 * 109.47355 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47481 * 300.01183 * 13 11 9 17 17 C 1.34771 * 119.99760 * 180.02562 * 2 1 3 18 18 O 1.21566 * 120.00509 * 183.69768 * 17 2 1 19 19 C 1.47731 * 120.00297 * 3.69358 * 17 2 1 20 20 C 1.39649 * 120.10993 * 149.22214 * 19 17 2 21 21 C 1.37855 * 119.92643 * 179.72964 * 20 19 17 22 22 C 1.38603 * 120.14604 * 0.02562 * 21 20 19 23 23 F 1.35102 * 119.89154 * 180.02562 * 22 21 20 24 24 C 1.38837 * 120.22185 * 359.97438 * 22 21 20 25 25 F 1.35104 * 119.96737 * 180.02562 * 24 22 21 26 26 C 1.38060 * 120.07117 * 359.97438 * 24 22 21 27 27 H 1.08994 * 109.47316 * 273.94145 * 1 2 3 28 28 H 1.09006 * 109.47028 * 33.93688 * 1 2 3 29 29 H 1.08997 * 109.47412 * 153.93283 * 1 2 3 30 30 H 1.09000 * 109.46637 * 24.92644 * 3 2 1 31 31 H 1.08994 * 109.46796 * 144.92578 * 3 2 1 32 32 H 1.09002 * 113.74423 * 252.25616 * 6 4 3 33 33 H 1.09001 * 113.74261 * 23.45831 * 6 4 3 34 34 H 1.08991 * 113.77362 * 90.69505 * 7 6 4 35 35 H 1.09005 * 113.76917 * 221.98304 * 7 6 4 36 36 H 0.97006 * 119.99932 * 179.97438 * 12 11 9 37 37 H 1.07997 * 120.03767 * 359.70629 * 20 19 17 38 38 H 1.08003 * 119.92808 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.06841 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5631 1.6466 -1.4368 5 1 3.2720 0.9546 -1.8913 6 6 1.3452 1.9595 -2.3250 7 6 2.1732 3.1359 -2.8732 8 7 2.9275 3.0668 -1.6039 9 6 3.6666 3.9601 -0.8752 10 1 4.1922 3.6315 0.0092 11 6 3.7403 5.2879 -1.2732 12 7 3.0994 5.6884 -2.3508 13 14 4.7479 6.5065 -0.2788 14 1 6.1650 6.0638 -0.2424 15 1 4.6643 7.8486 -0.9088 16 1 4.2154 6.5760 1.1057 17 6 2.1388 -1.1672 -0.0005 18 8 3.3526 -1.1685 0.0674 19 6 1.4025 -2.4452 -0.0835 20 6 1.9857 -3.5506 -0.7065 21 6 1.2974 -4.7429 -0.7769 22 6 0.0276 -4.8469 -0.2312 23 9 -0.6421 -6.0181 -0.3026 24 6 -0.5580 -3.7519 0.3897 25 9 -1.7958 -3.8591 0.9204 26 6 0.1235 -2.5537 0.4662 27 1 -0.3633 0.0706 1.0252 28 1 -0.3633 0.8527 -0.5738 29 1 -0.3634 -0.9231 -0.4516 30 1 1.5721 2.0493 0.4331 31 1 3.1075 1.1627 0.5905 32 1 1.1331 1.1891 -3.0663 33 1 0.4612 2.2659 -1.7657 34 1 2.7687 2.8829 -3.7503 35 1 1.6012 4.0553 -2.9982 36 1 3.1507 6.6164 -2.6288 37 1 2.9747 -3.4713 -1.1331 38 1 1.7486 -5.5980 -1.2584 39 1 -0.3319 -1.7020 0.9495 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085641481.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:15 Heat of formation + Delta-G solvation = -15.352005 kcal Electronic energy + Delta-G solvation = -25283.230923 eV Core-core repulsion = 21251.069058 eV Total energy + Delta-G solvation = -4032.161865 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -49.84826 -48.91909 -40.63245 -38.57168 -37.63340 -35.50706 -32.27223 -31.71809 -30.91022 -28.50913 -27.86416 -26.80909 -24.07164 -23.65306 -23.30121 -22.20550 -20.04296 -19.09517 -18.17578 -17.99783 -17.46882 -16.82817 -16.67484 -16.28797 -15.82293 -15.58905 -15.31486 -15.03113 -14.71371 -14.53215 -14.38066 -13.85822 -13.68344 -13.45896 -13.01857 -12.81694 -12.63519 -12.36719 -12.27925 -12.14354 -11.54737 -11.40433 -11.03486 -10.87817 -10.71080 -10.49838 -10.01857 -9.82680 -9.75097 -9.61354 -9.45058 -9.15040 -8.77310 -8.46563 -6.86880 -5.74945 -3.08639 0.20283 0.54639 2.43966 2.88519 3.20280 3.35892 3.40362 3.44943 3.45776 3.88077 4.04436 4.23661 4.46745 4.53255 4.59789 4.95337 5.12701 5.18630 5.24033 5.28835 5.37658 5.42202 5.52941 5.57556 5.61567 5.68945 5.82335 5.91916 6.14888 6.22420 6.24199 6.38163 6.52713 6.68470 6.77110 7.24640 7.37021 7.45468 7.59699 8.00034 8.11481 9.05636 9.72337 10.61464 11.41115 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.030965 B = 0.002880 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.041577 B = 9721.557320 C = 9845.132324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.596 5.596 3 C 0.117 3.883 4 C 0.130 3.870 5 H 0.047 0.953 6 C -0.159 4.159 7 C 0.156 3.844 8 N -0.601 5.601 9 C -0.223 4.223 10 H 0.078 0.922 11 C -0.006 4.006 12 N -0.921 5.921 13 Si 0.911 3.089 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.554 3.446 18 O -0.525 6.525 19 C -0.105 4.105 20 C -0.043 4.043 21 C -0.132 4.132 22 C 0.085 3.915 23 F -0.126 7.126 24 C 0.059 3.941 25 F -0.126 7.126 26 C -0.111 4.111 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.023 0.977 35 H 0.078 0.922 36 H 0.253 0.747 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.714 -19.736 3.501 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.328 5.328 3 C -0.005 4.005 4 C 0.022 3.978 5 H 0.065 0.935 6 C -0.197 4.197 7 C 0.031 3.969 8 N -0.328 5.328 9 C -0.351 4.351 10 H 0.096 0.904 11 C -0.203 4.203 12 N -0.568 5.568 13 Si 0.741 3.259 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.341 3.659 18 O -0.402 6.402 19 C -0.109 4.109 20 C -0.062 4.062 21 C -0.151 4.151 22 C 0.065 3.935 23 F -0.104 7.104 24 C 0.039 3.961 25 F -0.104 7.104 26 C -0.130 4.130 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.041 0.959 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.006 -19.399 3.627 21.693 hybrid contribution 0.207 0.435 0.492 0.688 sum -8.799 -18.964 4.119 21.307 Atomic orbital electron populations 1.22542 0.80092 1.04357 1.01764 1.47731 1.06879 1.06313 1.71832 1.21885 0.97021 0.82232 0.99402 1.22519 0.93851 0.88698 0.92708 0.93512 1.23769 0.97416 0.99445 0.99049 1.22301 0.90715 0.95664 0.88256 1.46041 1.60368 1.04216 1.22136 1.18977 1.22681 0.88073 1.05376 0.90425 1.24766 1.00695 0.96833 0.97994 1.69811 1.45983 1.15955 1.25028 0.86226 0.79921 0.80514 0.79254 1.21194 1.21602 1.21068 1.18043 0.87112 0.83154 0.77623 1.90834 1.13067 1.86903 1.49389 1.19952 0.94039 0.95579 1.01301 1.21213 1.00129 0.89895 0.95004 1.21076 0.92520 0.99957 1.01521 1.17949 0.92360 0.81410 1.01788 1.91549 1.79832 1.44730 1.94331 1.17502 0.82750 0.94230 1.01603 1.91557 1.38253 1.96533 1.84080 1.21973 0.94161 0.96902 0.99939 0.91984 0.89948 0.89887 0.89438 0.90287 0.93388 0.90913 0.95922 0.90404 0.93659 0.82974 0.82915 0.81448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 8.58 59.85 0.51 1.04 16 2 N -0.60 -8.11 2.78 -182.74 -0.51 -8.62 16 3 C 0.12 2.04 5.31 -4.04 -0.02 2.01 16 4 C 0.13 2.63 4.54 -66.87 -0.30 2.33 16 5 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 6 C -0.16 -2.88 7.18 -25.80 -0.19 -3.06 16 7 C 0.16 3.63 7.64 -2.85 -0.02 3.61 16 8 N -0.60 -15.14 3.58 -169.75 -0.61 -15.75 16 9 C -0.22 -6.19 10.51 -15.06 -0.16 -6.35 16 10 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 11 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 12 N -0.92 -27.07 11.32 55.49 0.63 -26.44 16 13 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 C 0.55 7.91 7.41 -12.38 -0.09 7.81 16 18 O -0.52 -9.53 16.37 5.31 0.09 -9.44 16 19 C -0.11 -1.13 5.48 -104.97 -0.58 -1.71 16 20 C -0.04 -0.40 9.59 -39.20 -0.38 -0.78 16 21 C -0.13 -1.03 10.01 -39.59 -0.40 -1.43 16 22 C 0.09 0.78 7.31 -39.23 -0.29 0.50 16 23 F -0.13 -1.25 17.17 2.25 0.04 -1.21 16 24 C 0.06 0.56 7.30 -39.43 -0.29 0.27 16 25 F -0.13 -1.28 17.18 2.25 0.04 -1.24 16 26 C -0.11 -1.00 7.43 -39.13 -0.29 -1.29 16 27 H 0.06 0.47 7.39 -51.93 -0.38 0.09 16 28 H 0.08 0.80 6.43 -51.93 -0.33 0.47 16 29 H 0.08 0.66 4.77 -51.93 -0.25 0.41 16 30 H 0.09 1.51 8.03 -51.93 -0.42 1.10 16 31 H 0.08 1.52 7.53 -51.93 -0.39 1.12 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.23 6.88 -51.93 -0.36 0.87 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 1.99 6.98 -51.93 -0.36 1.63 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.15 1.35 7.94 -52.49 -0.42 0.93 16 38 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.17 1.25 4.70 -52.49 -0.25 1.00 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -32.49 332.34 -7.31 -39.80 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -4.39 Total: -1.85 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.58 Total: 2.68 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.49 Total: -50.81 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.08 Total: -2.45 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.49 -7.31 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641481.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.449 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds