Wall clock time and date at job start Fri Apr 10 2020 22:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00195 * 2 1 4 4 C 1.52998 * 109.47319 * 264.92711 * 3 2 1 5 5 H 1.08998 * 112.96389 * 294.11298 * 4 3 2 6 6 C 1.53944 * 113.76954 * 65.78526 * 4 3 2 7 7 C 1.53942 * 86.28930 * 137.91150 * 6 4 3 8 8 N 1.47574 * 113.76848 * 162.42838 * 4 3 2 9 9 C 1.36936 * 134.49461 * 41.07198 * 8 4 3 10 10 H 1.07999 * 119.99893 * 4.67669 * 9 8 4 11 11 C 1.38811 * 120.00267 * 184.67016 * 9 8 4 12 12 N 1.31621 * 119.99888 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00178 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46808 * 60.00838 * 13 11 9 15 15 H 1.48497 * 109.47355 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47481 * 300.01183 * 13 11 9 17 17 C 1.34771 * 119.99760 * 180.02562 * 2 1 3 18 18 O 1.21566 * 120.00509 * 183.69768 * 17 2 1 19 19 C 1.47731 * 120.00297 * 3.69358 * 17 2 1 20 20 C 1.39649 * 120.10993 * 149.22214 * 19 17 2 21 21 C 1.37855 * 119.92643 * 179.72964 * 20 19 17 22 22 C 1.38603 * 120.14604 * 0.02562 * 21 20 19 23 23 F 1.35102 * 119.89154 * 180.02562 * 22 21 20 24 24 C 1.38837 * 120.22185 * 359.97438 * 22 21 20 25 25 F 1.35104 * 119.96737 * 180.02562 * 24 22 21 26 26 C 1.38060 * 120.07117 * 359.97438 * 24 22 21 27 27 H 1.08994 * 109.47316 * 273.94145 * 1 2 3 28 28 H 1.09006 * 109.47028 * 33.93688 * 1 2 3 29 29 H 1.08997 * 109.47412 * 153.93283 * 1 2 3 30 30 H 1.09000 * 109.46637 * 24.92644 * 3 2 1 31 31 H 1.08994 * 109.46796 * 144.92578 * 3 2 1 32 32 H 1.09002 * 113.74423 * 252.25616 * 6 4 3 33 33 H 1.09001 * 113.74261 * 23.45831 * 6 4 3 34 34 H 1.08991 * 113.77362 * 90.69505 * 7 6 4 35 35 H 1.09005 * 113.76917 * 221.98304 * 7 6 4 36 36 H 0.97006 * 119.99932 * 179.97438 * 12 11 9 37 37 H 1.07997 * 120.03767 * 359.70629 * 20 19 17 38 38 H 1.08003 * 119.92808 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.06841 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.5631 1.6466 -1.4368 5 1 3.2720 0.9546 -1.8913 6 6 1.3452 1.9595 -2.3250 7 6 2.1732 3.1359 -2.8732 8 7 2.9275 3.0668 -1.6039 9 6 3.6666 3.9601 -0.8752 10 1 4.1922 3.6315 0.0092 11 6 3.7403 5.2879 -1.2732 12 7 3.0994 5.6884 -2.3508 13 14 4.7479 6.5065 -0.2788 14 1 6.1650 6.0638 -0.2424 15 1 4.6643 7.8486 -0.9088 16 1 4.2154 6.5760 1.1057 17 6 2.1388 -1.1672 -0.0005 18 8 3.3526 -1.1685 0.0674 19 6 1.4025 -2.4452 -0.0835 20 6 1.9857 -3.5506 -0.7065 21 6 1.2974 -4.7429 -0.7769 22 6 0.0276 -4.8469 -0.2312 23 9 -0.6421 -6.0181 -0.3026 24 6 -0.5580 -3.7519 0.3897 25 9 -1.7958 -3.8591 0.9204 26 6 0.1235 -2.5537 0.4662 27 1 -0.3633 0.0706 1.0252 28 1 -0.3633 0.8527 -0.5738 29 1 -0.3634 -0.9231 -0.4516 30 1 1.5721 2.0493 0.4331 31 1 3.1075 1.1627 0.5905 32 1 1.1331 1.1891 -3.0663 33 1 0.4612 2.2659 -1.7657 34 1 2.7687 2.8829 -3.7503 35 1 1.6012 4.0553 -2.9982 36 1 3.1507 6.6164 -2.6288 37 1 2.9747 -3.4713 -1.1331 38 1 1.7486 -5.5980 -1.2584 39 1 -0.3319 -1.7020 0.9495 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085641481.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:12 Heat of formation + Delta-G solvation = -34.610305 kcal Electronic energy + Delta-G solvation = -25284.066026 eV Core-core repulsion = 21251.069058 eV Total energy + Delta-G solvation = -4032.996968 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.123 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -50.58508 -49.65956 -41.65166 -39.84603 -38.93415 -36.68809 -34.24727 -32.66265 -31.68287 -29.84683 -29.71022 -27.80815 -25.35521 -25.12004 -24.34436 -23.47831 -21.20487 -20.71721 -19.05430 -18.88487 -18.54424 -18.28625 -17.47552 -17.20942 -17.13852 -16.91914 -16.39804 -16.06915 -15.93873 -15.72276 -15.40338 -15.24650 -15.00994 -14.42311 -14.14455 -13.87341 -13.84738 -13.64508 -13.42010 -13.26247 -13.05865 -12.86798 -12.55818 -12.47138 -12.29678 -12.13555 -11.78941 -11.56864 -11.34889 -11.05953 -10.81753 -10.16303 -9.95601 -9.67307 -8.88873 -7.87869 -5.22447 -0.57126 -0.13496 1.45503 1.48158 1.50192 1.54610 1.82021 2.35874 2.49200 2.62898 3.11799 3.27291 3.31449 3.43147 3.52772 3.81451 3.87933 3.91929 4.16439 4.26256 4.27968 4.44530 4.52551 4.57444 4.61104 4.72810 4.77933 4.86054 4.87790 4.93177 5.02345 5.06245 5.07179 5.23614 5.40824 5.54637 5.58468 5.73317 5.97331 6.31266 6.94063 7.01475 7.62998 8.58855 9.27686 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.030965 B = 0.002880 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.041577 B = 9721.557320 C = 9845.132324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.593 5.593 3 C 0.134 3.866 4 C 0.130 3.870 5 H 0.030 0.970 6 C -0.122 4.122 7 C 0.145 3.855 8 N -0.628 5.628 9 C -0.233 4.233 10 H 0.077 0.923 11 C -0.063 4.063 12 N -0.951 5.951 13 Si 0.974 3.026 14 H -0.283 1.283 15 H -0.293 1.293 16 H -0.273 1.273 17 C 0.552 3.448 18 O -0.574 6.574 19 C -0.117 4.117 20 C -0.044 4.044 21 C -0.117 4.117 22 C 0.084 3.916 23 F -0.130 7.130 24 C 0.054 3.946 25 F -0.130 7.130 26 C -0.098 4.098 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.009 0.991 35 H 0.051 0.949 36 H 0.248 0.752 37 H 0.153 0.847 38 H 0.181 0.819 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.205 -21.409 4.230 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.324 5.324 3 C 0.010 3.990 4 C 0.023 3.977 5 H 0.048 0.952 6 C -0.160 4.160 7 C 0.020 3.980 8 N -0.355 5.355 9 C -0.361 4.361 10 H 0.095 0.905 11 C -0.256 4.256 12 N -0.600 5.600 13 Si 0.803 3.197 14 H -0.210 1.210 15 H -0.219 1.219 16 H -0.198 1.198 17 C 0.342 3.658 18 O -0.454 6.454 19 C -0.120 4.120 20 C -0.063 4.063 21 C -0.135 4.135 22 C 0.063 3.937 23 F -0.108 7.108 24 C 0.034 3.966 25 F -0.108 7.108 26 C -0.117 4.117 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.027 0.973 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.171 0.829 38 H 0.199 0.801 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -10.545 -21.115 4.370 24.003 hybrid contribution 0.668 0.839 0.240 1.099 sum -9.876 -20.276 4.610 23.020 Atomic orbital electron populations 1.22875 0.77149 1.05589 1.03812 1.47725 1.08509 1.04784 1.71369 1.21399 0.96655 0.84182 0.96784 1.22591 0.94209 0.85923 0.94933 0.95247 1.23518 0.96522 0.97418 0.98568 1.22298 0.91305 0.96737 0.87637 1.46441 1.60183 1.06140 1.22754 1.19312 1.22382 0.88915 1.05483 0.90477 1.25557 1.02256 0.98566 0.99255 1.69995 1.47573 1.15806 1.26604 0.85221 0.78389 0.77892 0.78245 1.20987 1.21942 1.19848 1.18544 0.86708 0.84224 0.76364 1.90810 1.15316 1.87668 1.51615 1.19662 0.94732 0.94218 1.03403 1.21303 1.00275 0.89987 0.94694 1.21260 0.91687 1.00117 1.00479 1.18140 0.92722 0.81179 1.01644 1.91545 1.79981 1.44982 1.94336 1.17547 0.82688 0.94456 1.01895 1.91551 1.38529 1.96557 1.84208 1.21985 0.93193 0.97345 0.99143 0.89408 0.89648 0.87866 0.89103 0.92808 0.90202 0.88895 0.97276 0.93063 0.94290 0.82901 0.80135 0.79758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.73 8.58 127.77 1.10 1.82 16 2 N -0.59 -15.15 2.78 -850.35 -2.37 -17.52 16 3 C 0.13 4.58 5.31 86.38 0.46 5.04 16 4 C 0.13 5.25 4.54 45.09 0.20 5.46 16 5 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 6 C -0.12 -4.24 7.18 31.25 0.22 -4.02 16 7 C 0.15 6.88 7.64 86.43 0.66 7.54 16 8 N -0.63 -32.14 3.58 -690.97 -2.48 -34.61 16 9 C -0.23 -13.10 10.51 84.03 0.88 -12.22 16 10 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 11 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 12 N -0.95 -57.26 11.32 21.65 0.25 -57.01 16 13 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 14 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 15 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 C 0.55 15.21 7.41 86.75 0.64 15.85 16 18 O -0.57 -21.06 16.37 -3.92 -0.06 -21.12 16 19 C -0.12 -2.28 5.48 -20.09 -0.11 -2.39 16 20 C -0.04 -0.72 9.59 22.52 0.22 -0.50 16 21 C -0.12 -1.48 10.01 22.27 0.22 -1.26 16 22 C 0.08 1.30 7.31 22.50 0.16 1.47 16 23 F -0.13 -2.25 17.17 44.97 0.77 -1.48 16 24 C 0.05 0.87 7.30 22.37 0.16 1.04 16 25 F -0.13 -2.30 17.18 44.97 0.77 -1.53 16 26 C -0.10 -1.48 7.43 22.56 0.17 -1.31 16 27 H 0.09 0.98 7.39 -2.39 -0.02 0.96 16 28 H 0.08 1.34 6.43 -2.38 -0.02 1.32 16 29 H 0.10 1.24 4.77 -2.39 -0.01 1.23 16 30 H 0.09 3.05 8.03 -2.39 -0.02 3.03 16 31 H 0.05 2.11 7.53 -2.39 -0.02 2.09 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.09 2.88 6.88 -2.39 -0.02 2.86 16 34 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.05 2.69 6.98 -2.38 -0.02 2.67 16 36 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 37 H 0.15 2.52 7.94 -2.91 -0.02 2.49 16 38 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 39 H 0.19 2.07 4.70 -2.91 -0.01 2.06 16 Total: -1.00 -72.59 332.34 5.47 -67.12 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 1.09 Total: 4.74 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.46 Total: 13.37 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -4.60 Total: -109.14 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.06 Total: -21.12 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 1.54 Total: -3.01 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -72.59 5.47 -67.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085641481.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.514 kcal (2) G-P(sol) polarization free energy of solvation -72.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds