Wall clock time and date at job start Fri Apr 10 2020 22:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38424 * 122.53941 * 2 1 4 4 C 1.33383 * 114.92238 * 179.97438 * 3 2 1 5 5 S 1.75889 * 109.59284 * 0.02562 * 4 3 2 6 6 C 1.33381 * 122.53924 * 179.71826 * 2 1 3 7 7 C 1.50707 * 125.20640 * 0.02562 * 6 2 1 8 8 N 1.46903 * 109.46786 * 89.99971 * 7 6 2 9 9 C 1.46894 * 111.00171 * 293.95800 * 8 7 6 10 10 C 1.46904 * 110.99459 * 170.00150 * 8 7 6 11 11 H 1.08998 * 109.47039 * 64.54008 * 10 8 7 12 12 C 1.52998 * 109.47343 * 304.53769 * 10 8 7 13 13 C 1.50703 * 109.46697 * 184.53491 * 10 8 7 14 14 O 1.21271 * 120.00039 * 24.83299 * 13 10 8 15 15 N 1.34780 * 119.99694 * 204.82733 * 13 10 8 16 16 C 1.46501 * 120.00042 * 4.75850 * 15 13 10 17 17 C 1.46499 * 119.99666 * 184.75363 * 15 13 10 18 18 C 1.50699 * 109.46933 * 90.00440 * 17 15 13 19 19 H 1.08001 * 120.00274 * 359.97438 * 18 17 15 20 20 C 1.37881 * 120.00114 * 180.02562 * 18 17 15 21 21 N 1.31519 * 119.99729 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00248 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47167 * 89.99301 * 22 20 18 24 24 H 1.48495 * 109.47194 * 209.99729 * 22 20 18 25 25 H 1.48501 * 109.46762 * 329.99718 * 22 20 18 26 26 H 1.08998 * 109.47678 * 90.01918 * 1 2 3 27 27 H 1.09003 * 109.47143 * 210.02529 * 1 2 3 28 28 H 1.09009 * 109.46815 * 330.01860 * 1 2 3 29 29 H 1.08005 * 122.54154 * 359.96257 * 3 2 1 30 30 H 1.08001 * 125.20531 * 179.97438 * 4 3 2 31 31 H 1.08991 * 109.47470 * 210.00567 * 7 6 2 32 32 H 1.09000 * 109.46432 * 330.00556 * 7 6 2 33 33 H 1.09001 * 109.47261 * 66.02772 * 9 8 7 34 34 H 1.09006 * 109.46915 * 186.02862 * 9 8 7 35 35 H 1.09003 * 109.46881 * 306.02299 * 9 8 7 36 36 H 1.09000 * 109.46888 * 187.78345 * 12 10 8 37 37 H 1.08994 * 109.46944 * 307.78647 * 12 10 8 38 38 H 1.09005 * 109.47217 * 67.78730 * 12 10 8 39 39 H 1.08993 * 109.47541 * 93.52131 * 16 15 13 40 40 H 1.09000 * 109.46804 * 213.51970 * 16 15 13 41 41 H 1.08997 * 109.47128 * 333.51605 * 16 15 13 42 42 H 1.09001 * 109.47160 * 210.00214 * 17 15 13 43 43 H 1.09000 * 109.47376 * 330.00165 * 17 15 13 44 44 H 0.97002 * 119.99683 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5736 0.9901 0.0005 5 16 3.9386 -0.7305 0.0004 6 6 2.2244 -1.1244 0.0055 7 6 1.6537 -2.5192 0.0118 8 7 1.4688 -2.9788 -1.3711 9 6 0.4416 -2.1839 -2.0572 10 6 1.1405 -4.4101 -1.4107 11 1 0.1777 -4.5755 -0.9271 12 6 2.2233 -5.2023 -0.6753 13 6 1.0681 -4.8694 -2.8442 14 8 1.6785 -4.2708 -3.7042 15 7 0.3251 -5.9456 -3.1702 16 6 -0.4943 -6.6061 -2.1511 17 6 0.3369 -6.4548 -4.5438 18 6 1.4311 -7.4807 -4.6899 19 1 2.0556 -7.7283 -3.8442 20 6 1.6357 -8.1025 -5.9034 21 7 0.8756 -7.8006 -6.9333 22 14 2.9916 -9.3746 -6.0843 23 1 2.4525 -10.7212 -5.7662 24 1 3.4996 -9.3615 -7.4795 25 1 4.1005 -9.0521 -5.1506 26 1 -0.3634 -0.0003 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5136 29 1 1.7965 2.1464 -0.0006 30 1 4.3077 1.7823 0.0002 31 1 2.3394 -3.1901 0.5291 32 1 0.6922 -2.5159 0.5252 33 1 0.7911 -1.1575 -2.1693 34 1 0.2483 -2.6114 -3.0411 35 1 -0.4769 -2.1929 -1.4703 36 1 2.0554 -6.2693 -0.8216 37 1 3.2026 -4.9311 -1.0694 38 1 2.1831 -4.9709 0.3892 39 1 -1.5044 -6.1972 -2.1759 40 1 -0.5308 -7.6768 -2.3521 41 1 -0.0575 -6.4357 -1.1672 42 1 -0.6252 -6.9152 -4.7689 43 1 0.5162 -5.6314 -5.2351 44 1 1.0193 -8.2383 -7.7870 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057620249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:24:20 Heat of formation + Delta-G solvation = 13.407637 kcal Electronic energy + Delta-G solvation = -24033.061175 eV Core-core repulsion = 20691.819903 eV Total energy + Delta-G solvation = -3341.241272 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.77389 -38.62384 -36.57477 -34.72740 -32.71713 -31.87715 -30.38234 -29.44744 -27.81281 -25.98007 -25.57647 -24.57761 -23.49388 -22.40014 -20.99017 -18.46801 -18.24874 -17.28807 -16.62582 -16.47368 -15.79128 -15.38641 -15.36455 -14.88413 -14.36290 -14.19437 -13.74821 -13.46981 -13.38147 -13.02922 -12.65500 -12.53312 -12.38318 -12.19032 -12.11219 -12.04276 -11.91539 -11.79889 -11.75515 -11.30338 -11.18549 -11.10362 -11.05825 -10.86357 -10.69852 -10.55400 -10.14049 -9.60379 -8.82811 -8.71949 -8.42262 -8.35956 -8.11466 -7.59682 -6.02950 -4.07790 0.92917 1.62582 2.00683 2.58948 3.30869 3.37527 3.40366 3.45931 3.73919 4.23509 4.46058 4.69636 4.81378 4.94743 5.03636 5.21408 5.23790 5.28020 5.28794 5.32323 5.35235 5.46012 5.53957 5.61310 5.62175 5.69240 5.78327 5.82646 5.87798 5.92338 5.98828 6.18097 6.21740 6.31699 6.36035 6.46021 6.94042 7.08479 7.16225 7.47149 7.57283 7.93998 8.25011 8.45029 8.92371 9.15488 9.57488 11.05065 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.003217 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.508349 B = 8700.988657 C = 9086.665909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.109 4.109 3 C -0.131 4.131 4 C -0.221 4.221 5 S 0.119 5.881 6 C -0.161 4.161 7 C 0.120 3.880 8 N -0.511 5.511 9 C 0.023 3.977 10 C 0.064 3.936 11 H 0.056 0.944 12 C -0.143 4.143 13 C 0.512 3.488 14 O -0.520 6.520 15 N -0.605 5.605 16 C 0.081 3.919 17 C 0.246 3.754 18 C -0.526 4.526 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.136 0.864 30 H 0.161 0.839 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.022 0.978 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.031 0.969 43 H 0.044 0.956 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.356 13.813 18.719 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.162 4.162 4 C -0.357 4.357 5 S 0.385 5.615 6 C -0.279 4.279 7 C -0.009 4.009 8 N -0.236 5.236 9 C -0.125 4.125 10 C -0.048 4.048 11 H 0.074 0.926 12 C -0.201 4.201 13 C 0.297 3.703 14 O -0.395 6.395 15 N -0.338 5.338 16 C -0.063 4.063 17 C 0.127 3.873 18 C -0.565 4.565 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.153 0.847 30 H 0.178 0.822 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.756 13.280 17.777 22.203 hybrid contribution -1.290 -0.007 0.204 1.306 sum -0.534 13.274 17.982 22.357 Atomic orbital electron populations 1.20676 0.90142 1.02252 1.02471 1.18802 0.97215 0.91678 1.04507 1.19972 0.92881 0.99024 1.04283 1.25580 0.99745 0.99499 1.10893 1.84350 1.05684 0.99600 1.71865 1.24109 0.95949 0.98328 1.09559 1.20608 0.99558 0.90408 0.90331 1.61727 1.46727 1.01481 1.13690 1.22601 0.91491 0.98918 0.99497 1.21700 0.98589 0.88722 0.95775 0.92611 1.21826 0.99333 1.00026 0.98908 1.19986 0.80060 0.80981 0.89306 1.90674 1.43639 1.55052 1.50143 1.48160 1.44173 1.28793 1.12717 1.21679 0.94147 0.99183 0.91315 1.19263 0.97069 0.94826 0.76112 1.21439 1.16630 1.21930 0.96506 0.92472 1.24941 0.96418 0.97191 0.95576 1.69938 1.39135 1.42775 1.01526 0.86499 0.82164 0.81312 0.77478 1.20674 1.21080 1.19856 0.90858 0.91775 0.91830 0.84672 0.82163 0.89256 0.92969 0.90954 0.90444 0.95976 0.91091 0.90754 0.92116 0.93897 0.90841 0.92353 0.95116 0.93793 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 8.34 36.01 0.30 -0.56 16 2 C -0.11 -1.19 4.98 -106.25 -0.53 -1.71 16 3 C -0.13 -1.32 9.98 -41.21 -0.41 -1.73 16 4 C -0.22 -2.23 11.23 29.04 0.33 -1.90 16 5 S 0.12 1.38 23.33 -107.50 -2.51 -1.13 16 6 C -0.16 -1.93 5.43 -36.00 -0.20 -2.13 16 7 C 0.12 1.42 4.94 -4.97 -0.02 1.40 16 8 N -0.51 -7.71 4.33 -237.72 -1.03 -8.74 16 9 C 0.02 0.33 7.60 60.06 0.46 0.79 16 10 C 0.06 0.99 1.62 -68.86 -0.11 0.88 16 11 H 0.06 0.75 6.64 -51.93 -0.35 0.40 16 12 C -0.14 -1.97 8.27 37.16 0.31 -1.67 16 13 C 0.51 10.76 5.78 -10.98 -0.06 10.70 16 14 O -0.52 -13.37 15.05 5.57 0.08 -13.28 16 15 N -0.61 -12.88 2.86 -182.96 -0.52 -13.40 16 16 C 0.08 1.28 10.06 59.85 0.60 1.88 16 17 C 0.25 6.50 5.21 -5.19 -0.03 6.47 16 18 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 19 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 22 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 H 0.07 0.67 6.49 -51.93 -0.34 0.33 16 27 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 28 H 0.06 0.46 8.13 -51.92 -0.42 0.04 16 29 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 30 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.09 0.99 5.86 -51.93 -0.30 0.68 16 32 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 33 H 0.07 1.03 5.76 -51.93 -0.30 0.73 16 34 H 0.08 1.38 6.15 -51.93 -0.32 1.06 16 35 H 0.02 0.27 7.40 -51.93 -0.38 -0.11 16 36 H 0.07 0.99 7.46 -51.93 -0.39 0.60 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 0.64 6.59 -51.93 -0.34 0.29 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 41 H 0.06 0.75 5.32 -51.93 -0.28 0.47 16 42 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 43 H 0.04 1.31 7.36 -51.93 -0.38 0.93 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -33.66 358.99 -9.20 -42.86 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.56 Total: -1.38 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 0.21 Total: -1.25 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.82 Total: -48.19 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.51 Total: -1.13 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.66 -9.20 -42.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057620249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.264 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds