Wall clock time and date at job start Fri Apr 10 2020 22:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38424 * 122.53941 * 2 1 4 4 C 1.33383 * 114.92238 * 179.97438 * 3 2 1 5 5 S 1.75889 * 109.59284 * 0.02562 * 4 3 2 6 6 C 1.33381 * 122.53924 * 179.71826 * 2 1 3 7 7 C 1.50707 * 125.20640 * 0.02562 * 6 2 1 8 8 N 1.46903 * 109.46786 * 89.99971 * 7 6 2 9 9 C 1.46894 * 111.00171 * 293.95800 * 8 7 6 10 10 C 1.46904 * 110.99459 * 170.00150 * 8 7 6 11 11 H 1.08998 * 109.47039 * 64.54008 * 10 8 7 12 12 C 1.52998 * 109.47343 * 304.53769 * 10 8 7 13 13 C 1.50703 * 109.46697 * 184.53491 * 10 8 7 14 14 O 1.21271 * 120.00039 * 24.83299 * 13 10 8 15 15 N 1.34780 * 119.99694 * 204.82733 * 13 10 8 16 16 C 1.46501 * 120.00042 * 4.75850 * 15 13 10 17 17 C 1.46499 * 119.99666 * 184.75363 * 15 13 10 18 18 C 1.50699 * 109.46933 * 90.00440 * 17 15 13 19 19 H 1.08001 * 120.00274 * 359.97438 * 18 17 15 20 20 C 1.37881 * 120.00114 * 180.02562 * 18 17 15 21 21 N 1.31519 * 119.99729 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00248 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47167 * 89.99301 * 22 20 18 24 24 H 1.48495 * 109.47194 * 209.99729 * 22 20 18 25 25 H 1.48501 * 109.46762 * 329.99718 * 22 20 18 26 26 H 1.08998 * 109.47678 * 90.01918 * 1 2 3 27 27 H 1.09003 * 109.47143 * 210.02529 * 1 2 3 28 28 H 1.09009 * 109.46815 * 330.01860 * 1 2 3 29 29 H 1.08005 * 122.54154 * 359.96257 * 3 2 1 30 30 H 1.08001 * 125.20531 * 179.97438 * 4 3 2 31 31 H 1.08991 * 109.47470 * 210.00567 * 7 6 2 32 32 H 1.09000 * 109.46432 * 330.00556 * 7 6 2 33 33 H 1.09001 * 109.47261 * 66.02772 * 9 8 7 34 34 H 1.09006 * 109.46915 * 186.02862 * 9 8 7 35 35 H 1.09003 * 109.46881 * 306.02299 * 9 8 7 36 36 H 1.09000 * 109.46888 * 187.78345 * 12 10 8 37 37 H 1.08994 * 109.46944 * 307.78647 * 12 10 8 38 38 H 1.09005 * 109.47217 * 67.78730 * 12 10 8 39 39 H 1.08993 * 109.47541 * 93.52131 * 16 15 13 40 40 H 1.09000 * 109.46804 * 213.51970 * 16 15 13 41 41 H 1.08997 * 109.47128 * 333.51605 * 16 15 13 42 42 H 1.09001 * 109.47160 * 210.00214 * 17 15 13 43 43 H 1.09000 * 109.47376 * 330.00165 * 17 15 13 44 44 H 0.97002 * 119.99683 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5736 0.9901 0.0005 5 16 3.9386 -0.7305 0.0004 6 6 2.2244 -1.1244 0.0055 7 6 1.6537 -2.5192 0.0118 8 7 1.4688 -2.9788 -1.3711 9 6 0.4416 -2.1839 -2.0572 10 6 1.1405 -4.4101 -1.4107 11 1 0.1777 -4.5755 -0.9271 12 6 2.2233 -5.2023 -0.6753 13 6 1.0681 -4.8694 -2.8442 14 8 1.6785 -4.2708 -3.7042 15 7 0.3251 -5.9456 -3.1702 16 6 -0.4943 -6.6061 -2.1511 17 6 0.3369 -6.4548 -4.5438 18 6 1.4311 -7.4807 -4.6899 19 1 2.0556 -7.7283 -3.8442 20 6 1.6357 -8.1025 -5.9034 21 7 0.8756 -7.8006 -6.9333 22 14 2.9916 -9.3746 -6.0843 23 1 2.4525 -10.7212 -5.7662 24 1 3.4996 -9.3615 -7.4795 25 1 4.1005 -9.0521 -5.1506 26 1 -0.3634 -0.0003 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5136 29 1 1.7965 2.1464 -0.0006 30 1 4.3077 1.7823 0.0002 31 1 2.3394 -3.1901 0.5291 32 1 0.6922 -2.5159 0.5252 33 1 0.7911 -1.1575 -2.1693 34 1 0.2483 -2.6114 -3.0411 35 1 -0.4769 -2.1929 -1.4703 36 1 2.0554 -6.2693 -0.8216 37 1 3.2026 -4.9311 -1.0694 38 1 2.1831 -4.9709 0.3892 39 1 -1.5044 -6.1972 -2.1759 40 1 -0.5308 -7.6768 -2.3521 41 1 -0.0575 -6.4357 -1.1672 42 1 -0.6252 -6.9152 -4.7689 43 1 0.5162 -5.6314 -5.2351 44 1 1.0193 -8.2383 -7.7870 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057620249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:24:19 Heat of formation + Delta-G solvation = -8.885514 kcal Electronic energy + Delta-G solvation = -24034.027879 eV Core-core repulsion = 20691.819903 eV Total energy + Delta-G solvation = -3342.207976 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17284 -39.64690 -37.76066 -36.51054 -34.76361 -33.00408 -31.39228 -30.34664 -29.68357 -27.39657 -26.65876 -25.89919 -24.97846 -23.53327 -22.25020 -19.80403 -19.23940 -18.67530 -18.34523 -17.88849 -17.18525 -16.74149 -16.41706 -16.24968 -15.89457 -15.65343 -14.90504 -14.72844 -14.40385 -14.11777 -13.98035 -13.88543 -13.52385 -13.47082 -13.40752 -13.19595 -13.06860 -13.06406 -12.80553 -12.77854 -12.63793 -12.55934 -12.38023 -12.21745 -12.20042 -12.06942 -11.70072 -11.52705 -10.64342 -10.45998 -9.57430 -9.40843 -9.24425 -9.12779 -8.22477 -6.37568 0.11037 0.81328 1.20223 1.36006 1.39497 1.49664 1.78197 1.85687 2.26971 2.42168 3.01549 3.06949 3.64637 3.82231 4.05494 4.09643 4.11487 4.14965 4.36896 4.39993 4.50331 4.51667 4.60223 4.65063 4.69260 4.71049 4.76185 4.80966 4.87623 4.93517 5.00308 5.01256 5.17550 5.20996 5.22920 5.24341 5.54853 5.56285 5.69422 5.82483 5.95186 6.05406 6.06584 6.70935 6.81508 7.28914 7.53232 8.84571 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.003217 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.508349 B = 8700.988657 C = 9086.665909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.108 4.108 3 C -0.140 4.140 4 C -0.216 4.216 5 S 0.079 5.921 6 C -0.182 4.182 7 C 0.124 3.876 8 N -0.536 5.536 9 C 0.033 3.967 10 C 0.078 3.922 11 H 0.090 0.910 12 C -0.139 4.139 13 C 0.503 3.497 14 O -0.581 6.581 15 N -0.612 5.612 16 C 0.075 3.925 17 C 0.262 3.738 18 C -0.542 4.542 19 H 0.055 0.945 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.968 3.032 23 H -0.261 1.261 24 H -0.282 1.282 25 H -0.272 1.272 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.158 0.842 30 H 0.182 0.818 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.022 0.978 43 H -0.005 1.005 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.763 13.837 21.594 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.171 4.171 4 C -0.352 4.352 5 S 0.344 5.656 6 C -0.299 4.299 7 C -0.004 4.004 8 N -0.262 5.262 9 C -0.115 4.115 10 C -0.034 4.034 11 H 0.108 0.892 12 C -0.197 4.197 13 C 0.291 3.709 14 O -0.460 6.460 15 N -0.344 5.344 16 C -0.067 4.067 17 C 0.140 3.860 18 C -0.581 4.581 19 H 0.073 0.927 20 C -0.193 4.193 21 N -0.569 5.569 22 Si 0.793 3.207 23 H -0.186 1.186 24 H -0.207 1.207 25 H -0.197 1.197 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.176 0.824 30 H 0.199 0.801 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.040 0.960 43 H 0.013 0.987 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.318 13.293 20.709 24.610 hybrid contribution -1.199 0.100 -0.697 1.390 sum -0.881 13.393 20.012 24.096 Atomic orbital electron populations 1.20727 0.88676 1.03559 1.02571 1.19150 0.98374 0.91588 1.03037 1.20298 0.92919 0.99910 1.03923 1.25875 1.00437 0.98789 1.10065 1.84459 1.06768 1.01621 1.72749 1.24196 0.95684 0.98805 1.11260 1.20651 1.00868 0.90481 0.88362 1.61623 1.47287 1.01146 1.16101 1.22443 0.92760 0.98357 0.97903 1.21602 1.00909 0.89370 0.91480 0.89233 1.21848 0.97264 0.99560 1.01030 1.21081 0.78463 0.79930 0.91441 1.90635 1.45985 1.56850 1.52507 1.48178 1.45071 1.29340 1.11851 1.21984 0.94851 0.98557 0.91293 1.18702 0.96053 0.92599 0.78638 1.21713 1.17168 1.22439 0.96745 0.92716 1.25886 0.98860 0.99362 0.95156 1.70062 1.40791 1.43969 1.02085 0.85402 0.78835 0.79133 0.77374 1.18633 1.20748 1.19721 0.91196 0.91031 0.90053 0.82434 0.80061 0.88481 0.90624 0.91031 0.94532 0.93155 0.91183 0.93211 0.87886 0.91453 0.91391 0.88601 0.95991 0.98731 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 8.34 71.24 0.59 -0.84 16 2 C -0.11 -2.11 4.98 -20.92 -0.10 -2.22 16 3 C -0.14 -2.52 9.98 21.21 0.21 -2.31 16 4 C -0.22 -4.01 11.23 66.72 0.75 -3.26 16 5 S 0.08 1.77 23.33 -56.49 -1.32 0.46 16 6 C -0.18 -4.05 5.43 24.59 0.13 -3.91 16 7 C 0.12 2.63 4.94 85.56 0.42 3.05 16 8 N -0.54 -15.51 4.33 -906.03 -3.92 -19.43 16 9 C 0.03 0.95 7.60 127.69 0.97 1.92 16 10 C 0.08 2.27 1.62 44.17 0.07 2.35 16 11 H 0.09 2.02 6.64 -2.39 -0.02 2.01 16 12 C -0.14 -3.52 8.27 71.98 0.60 -2.93 16 13 C 0.50 21.52 5.78 87.66 0.51 22.02 16 14 O -0.58 -31.53 15.05 -3.00 -0.05 -31.58 16 15 N -0.61 -26.37 2.86 -851.15 -2.43 -28.80 16 16 C 0.08 2.23 10.06 127.77 1.29 3.51 16 17 C 0.26 14.43 5.21 85.63 0.45 14.88 16 18 C -0.54 -31.70 9.39 25.60 0.24 -31.46 16 19 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 20 C 0.01 0.36 5.46 84.65 0.46 0.82 16 21 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 22 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 25 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 26 H 0.07 1.11 6.49 -2.39 -0.02 1.10 16 27 H 0.07 0.95 6.56 -2.39 -0.02 0.94 16 28 H 0.08 0.92 8.13 -2.38 -0.02 0.90 16 29 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 30 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.10 1.87 5.86 -2.39 -0.01 1.85 16 32 H 0.08 1.25 6.56 -2.39 -0.02 1.23 16 33 H 0.07 2.02 5.76 -2.39 -0.01 2.00 16 34 H 0.04 1.34 6.15 -2.38 -0.01 1.33 16 35 H 0.05 1.12 7.40 -2.39 -0.02 1.10 16 36 H 0.07 1.78 7.46 -2.39 -0.02 1.77 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.10 1.74 6.59 -2.38 -0.02 1.72 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 2.10 8.10 -2.39 -0.02 2.08 16 41 H 0.10 2.11 5.32 -2.39 -0.01 2.09 16 42 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 43 H -0.01 -0.35 7.36 -2.39 -0.02 -0.37 16 44 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -77.94 358.99 2.18 -75.76 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.00 Total: 11.32 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 6.59 Total: 1.63 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -6.07 Total: -105.09 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.05 Total: -31.58 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.32 Total: 0.46 kcal Total: -77.94 2.18 -75.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057620249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.878 kcal (2) G-P(sol) polarization free energy of solvation -77.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds