Wall clock time and date at job start Fri Apr 10 2020 22:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99823 * 2 1 4 4 N 1.46498 * 109.46924 * 124.93631 * 3 2 1 5 5 C 1.46498 * 120.00131 * 94.27995 * 4 3 2 6 6 C 1.50709 * 109.47067 * 91.61307 * 5 4 3 7 7 H 1.07999 * 120.00048 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00098 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00039 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99879 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47260 * 89.99822 * 10 8 6 12 12 H 1.48499 * 109.47169 * 209.99513 * 10 8 6 13 13 H 1.48498 * 109.47548 * 329.99411 * 10 8 6 14 14 C 1.34772 * 119.99900 * 274.28255 * 4 3 2 15 15 O 1.21709 * 120.00240 * 6.00258 * 14 4 3 16 16 C 1.46591 * 120.00090 * 186.00563 * 14 4 3 17 17 C 1.38054 * 126.00575 * 187.59365 * 16 14 4 18 18 C 1.39362 * 107.43811 * 179.97438 * 17 16 14 19 19 C 1.37827 * 107.65594 * 359.97438 * 18 17 16 20 20 C 1.47802 * 125.82289 * 179.97438 * 19 18 17 21 21 C 1.39597 * 120.14678 * 179.75094 * 20 19 18 22 22 C 1.37951 * 119.85002 * 179.77026 * 21 20 19 23 23 C 1.38364 * 120.15106 * 0.50558 * 22 21 20 24 24 C 1.38362 * 120.29211 * 359.74390 * 23 22 21 25 25 C 1.37952 * 120.14878 * 0.02562 * 24 23 22 26 26 N 1.36407 * 108.35014 * 359.73432 * 19 18 17 27 27 H 0.96997 * 125.71644 * 180.29540 * 26 19 18 28 28 H 1.08007 * 119.99792 * 185.06086 * 1 2 3 29 29 H 1.07995 * 120.00385 * 5.05767 * 1 2 3 30 30 H 1.08003 * 120.00035 * 180.02562 * 2 1 3 31 31 H 1.08992 * 109.47123 * 4.93400 * 3 2 1 32 32 H 1.09002 * 109.47131 * 244.93314 * 3 2 1 33 33 H 1.09004 * 109.47443 * 211.61458 * 5 4 3 34 34 H 1.09001 * 109.47184 * 331.61982 * 5 4 3 35 35 H 0.96997 * 120.00038 * 180.02562 * 9 8 6 36 36 H 1.07993 * 126.27938 * 359.95733 * 17 16 14 37 37 H 1.07993 * 126.17032 * 179.97438 * 18 17 16 38 38 H 1.07999 * 120.07322 * 359.97438 * 21 20 19 39 39 H 1.08001 * 119.92432 * 180.25273 * 22 21 20 40 40 H 1.07998 * 119.85474 * 179.76952 * 23 22 21 41 41 H 1.08002 * 119.92678 * 180.02562 * 24 23 22 42 42 H 1.08004 * 120.07628 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9926 1.3326 1.1323 5 6 4.3844 0.9141 0.9481 6 6 5.2273 2.1131 0.5972 7 1 4.7718 3.0893 0.5197 8 6 6.5800 1.9641 0.3763 9 7 7.3156 3.0105 0.0706 10 14 7.3679 0.2757 0.5111 11 1 7.3299 -0.3955 -0.8130 12 1 8.7785 0.4215 0.9518 13 1 6.6218 -0.5411 1.5018 14 6 2.5670 1.7427 2.3435 15 8 1.3882 1.9859 2.5241 16 6 3.5238 1.8961 3.4434 17 6 3.2097 2.1628 4.7610 18 6 4.4072 2.2282 5.4708 19 6 5.4341 2.0006 4.5801 20 6 6.8751 1.9803 4.9080 21 6 7.8180 1.7317 3.9090 22 6 9.1617 1.7188 4.2210 23 6 9.5752 1.9413 5.5225 24 6 8.6456 2.1832 6.5184 25 6 7.2991 2.2035 6.2192 26 7 4.8932 1.7920 3.3453 27 1 5.3902 1.6044 2.5338 28 1 -0.5400 -0.9317 0.0825 29 1 -0.5400 0.9316 -0.0824 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0884 32 1 2.6222 1.4021 -0.9309 33 1 4.7546 0.4671 1.8708 34 1 4.4402 0.1824 0.1420 35 1 8.2672 2.9056 -0.0852 36 1 2.2180 2.2966 5.1671 37 1 4.5118 2.4222 6.5280 38 1 7.4964 1.5531 2.8936 39 1 9.8924 1.5306 3.4483 40 1 10.6281 1.9265 5.7621 41 1 8.9749 2.3565 7.5323 42 1 6.5745 2.3929 6.9974 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359399521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:25:50 Heat of formation + Delta-G solvation = 57.296216 kcal Electronic energy + Delta-G solvation = -25628.913387 eV Core-core repulsion = 22154.131315 eV Total energy + Delta-G solvation = -3474.782072 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 310.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.46757 -40.43706 -39.49290 -37.43084 -35.49901 -34.24688 -32.91029 -32.38856 -31.52929 -30.16361 -29.41360 -27.11479 -24.97632 -24.02379 -23.63063 -22.08779 -21.51979 -20.76700 -20.48540 -19.35920 -18.80951 -17.88004 -17.39544 -16.70762 -16.63961 -16.10967 -15.80799 -15.57081 -15.50943 -15.15618 -14.97109 -14.72910 -14.45540 -14.34100 -14.24190 -13.63539 -13.55522 -13.46429 -13.43578 -13.31923 -12.87546 -12.60882 -12.35705 -12.17367 -12.13750 -11.96958 -11.87061 -11.22997 -11.06374 -10.42339 -10.32341 -9.95497 -9.92208 -9.68570 -8.59065 -8.57459 -6.69311 -0.14036 0.43929 0.78556 1.13374 1.17136 1.21083 1.24082 1.86308 2.02327 2.15463 2.35735 2.45990 2.73016 2.96286 3.63187 3.71106 3.91872 3.98691 4.03789 4.15660 4.23162 4.26660 4.36760 4.42861 4.46395 4.51961 4.54866 4.63285 4.73829 4.88362 4.97162 5.07066 5.08383 5.12587 5.15248 5.38272 5.50343 5.51699 5.55734 5.63138 5.78931 5.92192 5.93766 6.04129 6.05950 6.33958 6.44349 6.57856 6.92467 7.11657 8.56895 Molecular weight = 310.14amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.005721 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.471388 B = 4893.003220 C = 6451.709083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.187 4.187 3 C 0.144 3.856 4 N -0.593 5.593 5 C 0.199 3.801 6 C -0.564 4.564 7 H 0.041 0.959 8 C 0.046 3.954 9 N -0.903 5.903 10 Si 0.890 3.110 11 H -0.250 1.250 12 H -0.258 1.258 13 H -0.251 1.251 14 C 0.582 3.418 15 O -0.570 6.570 16 C -0.073 4.073 17 C -0.123 4.123 18 C -0.184 4.184 19 C 0.049 3.951 20 C -0.039 4.039 21 C -0.150 4.150 22 C -0.129 4.129 23 C -0.115 4.115 24 C -0.108 4.108 25 C -0.099 4.099 26 N -0.524 5.524 27 H 0.434 0.566 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.031 0.969 34 H 0.057 0.943 35 H 0.278 0.722 36 H 0.159 0.841 37 H 0.181 0.819 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.157 0.843 41 H 0.168 0.832 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 -6.207 10.066 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.206 4.206 3 C 0.022 3.978 4 N -0.322 5.322 5 C 0.076 3.924 6 C -0.602 4.602 7 H 0.060 0.940 8 C -0.158 4.158 9 N -0.539 5.539 10 Si 0.711 3.289 11 H -0.175 1.175 12 H -0.182 1.182 13 H -0.174 1.174 14 C 0.373 3.627 15 O -0.452 6.452 16 C -0.189 4.189 17 C -0.149 4.149 18 C -0.208 4.208 19 C -0.070 4.070 20 C -0.040 4.040 21 C -0.169 4.169 22 C -0.147 4.147 23 C -0.133 4.133 24 C -0.126 4.126 25 C -0.117 4.117 26 N -0.132 5.132 27 H 0.290 0.710 28 H 0.138 0.862 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.177 0.823 37 H 0.198 0.802 38 H 0.106 0.894 39 H 0.143 0.857 40 H 0.175 0.825 41 H 0.186 0.814 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.414 -6.058 9.809 11.615 hybrid contribution 0.695 -0.359 -1.395 1.600 sum 2.109 -6.417 8.413 10.789 Atomic orbital electron populations 1.23985 0.95205 1.02862 0.97569 1.23214 0.96870 0.97935 1.02575 1.20551 0.91953 0.96539 0.88742 1.47807 1.11411 1.64068 1.08910 1.20010 0.79039 0.95670 0.97704 1.21429 0.93533 0.94556 1.50685 0.94039 1.25553 0.97161 0.99812 0.93284 1.69966 1.07758 1.31463 1.44698 0.86608 0.80273 0.80871 0.81107 1.17459 1.18224 1.17442 1.17334 0.86814 0.76545 0.82001 1.90692 1.17020 1.54200 1.83259 1.20608 0.82977 1.18479 0.96834 1.21368 0.99917 1.03537 0.90106 1.21347 0.89356 1.09818 1.00238 1.19900 0.93417 1.07872 0.85823 1.18339 0.88296 1.01912 0.95405 1.21350 0.95109 1.02377 0.98091 1.21232 0.94363 1.00510 0.98560 1.21602 1.01597 0.98418 0.91679 1.21535 0.91757 0.98232 1.01038 1.21456 0.97669 0.98710 0.93890 1.44293 1.06700 1.50642 1.11531 0.71042 0.86189 0.88427 0.86888 0.90954 0.89134 0.95154 0.92488 0.91227 0.82325 0.80186 0.89420 0.85720 0.82537 0.81442 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 14.31 67.78 0.97 -3.32 16 2 C -0.19 -5.88 9.81 25.65 0.25 -5.63 16 3 C 0.14 5.39 5.75 85.63 0.49 5.88 16 4 N -0.59 -26.02 2.45 -835.31 -2.05 -28.06 16 5 C 0.20 9.02 3.74 85.64 0.32 9.34 16 6 C -0.56 -29.66 7.92 25.60 0.20 -29.46 16 7 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 8 C 0.05 2.41 4.82 84.65 0.41 2.81 16 9 N -0.90 -50.38 13.96 21.45 0.30 -50.08 16 10 Si 0.89 37.88 24.61 68.60 1.69 39.57 16 11 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 12 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 13 H -0.25 -10.20 6.54 99.48 0.65 -9.55 16 14 C 0.58 26.95 7.58 86.42 0.66 27.61 16 15 O -0.57 -27.27 16.60 -4.38 -0.07 -27.34 16 16 C -0.07 -3.28 6.62 40.36 0.27 -3.01 16 17 C -0.12 -4.64 10.61 22.50 0.24 -4.40 16 18 C -0.18 -6.14 10.22 22.44 0.23 -5.91 16 19 C 0.05 1.92 6.93 40.87 0.28 2.20 16 20 C -0.04 -1.36 5.87 -20.09 -0.12 -1.48 16 21 C -0.15 -5.72 9.70 22.53 0.22 -5.50 16 22 C -0.13 -3.96 10.03 22.23 0.22 -3.73 16 23 C -0.12 -2.61 10.04 22.33 0.22 -2.38 16 24 C -0.11 -2.21 10.03 22.23 0.22 -1.98 16 25 C -0.10 -2.50 9.57 22.53 0.22 -2.29 16 26 N -0.52 -23.56 4.73 -172.30 -0.81 -24.38 16 27 H 0.43 20.53 1.96 -92.71 -0.18 20.35 16 28 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 29 H 0.10 2.62 7.86 -2.91 -0.02 2.60 16 30 H 0.11 3.34 8.06 -2.91 -0.02 3.32 16 31 H 0.07 2.77 7.31 -2.39 -0.02 2.75 16 32 H 0.09 3.27 8.04 -2.39 -0.02 3.25 16 33 H 0.03 1.42 4.30 -2.39 -0.01 1.41 16 34 H 0.06 2.39 7.49 -2.39 -0.02 2.37 16 35 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 36 H 0.16 5.33 8.06 -2.91 -0.02 5.30 16 37 H 0.18 4.29 7.26 -2.91 -0.02 4.27 16 38 H 0.09 3.82 3.86 -2.91 -0.01 3.81 16 39 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 40 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 41 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.16 2.97 6.98 -2.91 -0.02 2.95 16 Total: -1.00 -66.47 346.41 5.17 -61.31 By element: Atomic # 1 Polarization: 49.42 SS G_CDS: 0.81 Total: 50.23 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 5.30 Total: -21.24 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -2.56 Total: -102.52 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.07 Total: -27.34 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 1.69 Total: 39.57 kcal Total: -66.47 5.17 -61.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359399521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.602 kcal (2) G-P(sol) polarization free energy of solvation -66.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds