Wall clock time and date at job start Fri Apr 10 2020 22:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 120.00043 * 2 1 4 4 H 1.48497 * 109.47056 * 269.99856 * 3 2 1 5 5 H 1.48500 * 109.47069 * 29.99622 * 3 2 1 6 6 H 1.48498 * 109.47154 * 149.99473 * 3 2 1 7 7 C 1.38811 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99942 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00109 * 194.09780 * 9 7 2 11 11 C 1.53004 * 109.49610 * 65.82175 * 10 9 7 12 12 O 1.42898 * 109.46931 * 305.06220 * 11 10 9 13 13 C 1.53037 * 109.49959 * 185.88582 * 10 9 7 14 14 C 1.53039 * 109.53782 * 58.61673 * 13 10 9 15 15 C 1.53196 * 109.31329 * 61.36704 * 14 13 10 16 16 N 1.46924 * 108.77172 * 305.36566 * 15 14 13 17 17 C 1.34773 * 120.62930 * 233.58233 * 16 15 14 18 18 O 1.21743 * 120.00429 * 16.20315 * 17 16 15 19 19 C 1.41800 * 120.00322 * 196.20624 * 17 16 15 20 20 C 1.33448 * 118.78995 * 203.66745 * 19 17 16 21 21 O 1.34354 * 123.08318 * 180.71706 * 20 19 17 22 22 C 1.45500 * 117.38185 * 343.16668 * 21 20 19 23 23 C 1.53479 * 108.12933 * 47.89351 * 22 21 20 24 24 C 1.50422 * 118.78425 * 23.68759 * 19 17 16 25 25 C 1.46928 * 118.74113 * 53.86219 * 16 15 14 26 26 H 0.96993 * 119.99901 * 0.02562 * 1 2 3 27 27 H 0.96997 * 120.00370 * 14.09825 * 9 7 2 28 28 H 1.08994 * 109.47225 * 65.06713 * 11 10 9 29 29 H 1.09002 * 109.46909 * 185.06553 * 11 10 9 30 30 H 0.96704 * 113.99925 * 179.97438 * 12 11 10 31 31 H 1.09007 * 109.46166 * 298.60146 * 13 10 9 32 32 H 1.09001 * 109.45188 * 178.63270 * 13 10 9 33 33 H 1.08997 * 109.49911 * 301.41573 * 14 13 10 34 34 H 1.09004 * 109.52616 * 181.33153 * 14 13 10 35 35 H 1.09000 * 109.58855 * 185.57777 * 15 14 13 36 36 H 1.09007 * 109.58394 * 65.14802 * 15 14 13 37 37 H 1.08002 * 118.46295 * 0.42921 * 20 19 17 38 38 H 1.09002 * 109.91227 * 288.16138 * 22 21 20 39 39 H 1.08999 * 109.66651 * 167.47877 * 22 21 20 40 40 H 1.08997 * 109.70594 * 177.43864 * 23 22 21 41 41 H 1.09001 * 109.71124 * 56.81840 * 23 22 21 42 42 H 1.09000 * 109.45522 * 282.33582 * 24 19 17 43 43 H 1.09000 * 109.45214 * 42.30001 * 24 19 17 44 44 H 1.08992 * 109.58720 * 65.92104 * 25 16 15 45 45 H 1.08996 * 109.58729 * 186.35117 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0249 -3.6376 0.3101 11 6 2.4944 -3.6128 1.7661 12 8 3.2864 -2.4449 1.9913 13 6 1.0760 -4.8197 0.0995 14 6 0.5800 -4.8262 -1.3482 15 6 1.7750 -4.9913 -2.2925 16 7 2.7598 -3.9419 -1.9967 17 6 3.2179 -3.1349 -2.9742 18 8 2.6215 -3.0623 -4.0331 19 6 4.3945 -2.3705 -2.7694 20 6 4.5761 -1.2640 -3.4929 21 8 5.6641 -0.4839 -3.3795 22 6 6.4857 -0.6502 -2.1903 23 6 6.7396 -2.1507 -1.9912 24 6 5.3921 -2.8370 -1.7448 25 6 3.2405 -3.7929 -0.6163 26 1 -0.4849 0.8400 -0.0004 27 1 0.3776 -2.4008 -0.2044 28 1 1.6279 -3.5974 2.4271 29 1 3.0915 -4.5016 1.9705 30 1 3.6185 -2.3633 2.8959 31 1 0.2251 -4.7271 0.7745 32 1 1.6041 -5.7505 0.3066 33 1 0.0735 -3.8854 -1.5635 34 1 -0.1142 -5.6543 -1.4918 35 1 1.4401 -4.8975 -3.3255 36 1 2.2281 -5.9710 -2.1405 37 1 3.8148 -0.9848 -4.2064 38 1 5.9664 -0.2468 -1.3210 39 1 7.4349 -0.1316 -2.3248 40 1 7.3918 -2.3021 -1.1311 41 1 7.2058 -2.5664 -2.8845 42 1 5.0330 -2.5843 -0.7471 43 1 5.5153 -3.9171 -1.8236 44 1 3.8106 -4.6768 -0.3305 45 1 3.8729 -2.9082 -0.5431 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755082425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:25:58 Heat of formation + Delta-G solvation = -64.549852 kcal Electronic energy + Delta-G solvation = -28836.891411 eV Core-core repulsion = 25049.516778 eV Total energy + Delta-G solvation = -3787.374634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.56515 -39.15310 -37.68836 -35.56917 -34.32549 -33.59455 -32.17382 -31.48823 -30.75582 -28.58298 -26.11728 -25.53658 -24.80226 -23.95586 -23.35071 -21.44279 -20.15815 -18.80782 -18.41703 -17.31582 -16.77784 -16.26139 -16.11616 -15.67393 -15.44268 -14.86151 -14.70153 -14.36242 -14.13281 -13.82407 -13.61692 -13.41875 -13.14541 -13.03347 -12.93532 -12.84864 -12.26634 -12.07013 -11.83808 -11.63394 -11.19031 -11.12156 -10.85569 -10.77155 -10.74161 -10.48752 -10.45414 -10.32651 -10.05734 -9.63563 -9.50404 -9.26057 -9.06844 -8.71504 -8.17092 -7.83743 -6.79088 -5.62020 -2.89556 1.91252 3.41154 3.50168 3.54380 3.56903 3.67255 3.96741 4.68876 4.76150 4.82604 4.85687 5.02347 5.26822 5.32570 5.37340 5.40237 5.43752 5.49034 5.59706 5.62154 5.67960 5.74341 5.84150 5.84859 5.88147 5.91406 6.03379 6.06829 6.10134 6.16733 6.30018 6.32727 6.42215 6.47348 6.58074 6.59784 6.78022 6.88084 7.23738 7.53728 7.95719 8.11576 8.34952 8.58115 8.85634 9.67747 10.18317 10.56553 11.61051 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.009875 B = 0.008731 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.765074 B = 3206.091204 C = 4397.243142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.017 4.017 3 Si 0.894 3.106 4 H -0.293 1.293 5 H -0.295 1.295 6 H -0.283 1.283 7 C -0.193 4.193 8 H 0.072 0.928 9 N -0.699 5.699 10 C 0.187 3.813 11 C 0.074 3.926 12 O -0.537 6.537 13 C -0.115 4.115 14 C -0.129 4.129 15 C 0.118 3.882 16 N -0.594 5.594 17 C 0.589 3.411 18 O -0.569 6.569 19 C -0.296 4.296 20 C 0.148 3.852 21 O -0.315 6.315 22 C 0.051 3.949 23 C -0.156 4.156 24 C -0.083 4.083 25 C 0.082 3.918 26 H 0.250 0.750 27 H 0.381 0.619 28 H 0.037 0.963 29 H 0.021 0.979 30 H 0.352 0.648 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.173 0.827 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.075 0.925 44 H 0.044 0.956 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.208 -10.101 0.860 15.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.211 4.211 3 Si 0.726 3.274 4 H -0.221 1.221 5 H -0.222 1.222 6 H -0.209 1.209 7 C -0.324 4.324 8 H 0.090 0.910 9 N -0.340 5.340 10 C 0.094 3.906 11 C -0.008 4.008 12 O -0.338 6.338 13 C -0.153 4.153 14 C -0.167 4.167 15 C -0.005 4.005 16 N -0.325 5.325 17 C 0.382 3.618 18 O -0.451 6.451 19 C -0.300 4.300 20 C 0.081 3.919 21 O -0.226 6.226 22 C -0.023 4.023 23 C -0.194 4.194 24 C -0.119 4.119 25 C -0.042 4.042 26 H 0.060 0.940 27 H 0.216 0.784 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.196 0.804 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.190 0.810 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.119 0.881 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.949 -9.662 -0.420 14.609 hybrid contribution 0.078 0.651 1.095 1.276 sum 11.027 -9.011 0.675 14.256 Atomic orbital electron populations 1.69671 1.05013 1.25071 1.58924 1.24732 0.95299 0.97315 1.03782 0.86372 0.78843 0.84843 0.77358 1.22055 1.22191 1.20855 1.19018 0.90749 0.83189 1.39482 0.91021 1.42289 1.09249 1.00539 1.81889 1.20075 0.91659 0.88366 0.90529 1.22812 0.93045 0.86114 0.98780 1.86881 1.70593 1.44257 1.32115 1.21631 0.99317 0.97361 0.97038 1.21830 0.97426 1.02886 0.94606 1.21432 0.89347 0.89404 1.00351 1.47512 1.42723 1.33917 1.08396 1.16462 0.83537 0.78632 0.83177 1.90734 1.60153 1.66323 1.27932 1.19921 1.00496 1.01321 1.08277 1.22767 0.86591 0.87621 0.94895 1.86255 1.35649 1.58267 1.42448 1.23544 0.94807 0.96922 0.87050 1.22225 0.98492 0.95625 1.03022 1.20946 0.92076 1.00197 0.98685 1.23115 0.98114 1.02136 0.80819 0.93998 0.78399 0.94510 0.96125 0.80376 0.91710 0.92224 0.90185 0.91826 0.89758 0.92752 0.81017 0.90508 0.87859 0.89889 0.90895 0.88137 0.90688 0.93815 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.52 13.11 55.49 0.73 -27.79 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.89 22.86 29.55 -169.99 -5.02 17.83 16 4 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.19 -5.08 7.77 -15.06 -0.12 -5.20 16 8 H 0.07 1.88 5.78 -52.49 -0.30 1.58 16 9 N -0.70 -16.51 4.61 -46.91 -0.22 -16.73 16 10 C 0.19 3.42 0.68 -131.47 -0.09 3.33 16 11 C 0.07 1.23 6.11 37.16 0.23 1.46 16 12 O -0.54 -9.62 10.80 -35.23 -0.38 -10.00 16 13 C -0.12 -1.78 4.74 -26.69 -0.13 -1.91 16 14 C -0.13 -2.05 5.91 -26.61 -0.16 -2.21 16 15 C 0.12 1.91 6.44 -3.71 -0.02 1.88 16 16 N -0.59 -10.83 2.86 -175.85 -0.50 -11.34 16 17 C 0.59 11.97 7.15 -14.90 -0.11 11.86 16 18 O -0.57 -13.15 15.69 5.15 0.08 -13.07 16 19 C -0.30 -5.30 5.23 -105.07 -0.55 -5.85 16 20 C 0.15 2.64 10.42 29.06 0.30 2.95 16 21 O -0.31 -5.05 10.48 -14.90 -0.16 -5.21 16 22 C 0.05 0.65 7.16 37.41 0.27 0.92 16 23 C -0.16 -1.80 6.23 -26.37 -0.16 -1.97 16 24 C -0.08 -1.19 4.13 -27.91 -0.12 -1.30 16 25 C 0.08 1.41 3.26 -3.48 -0.01 1.39 16 26 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.38 9.96 6.74 -40.82 -0.28 9.68 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.35 4.65 9.12 45.56 0.42 5.07 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.56 6.87 -51.93 -0.36 1.21 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.47 7.06 -51.93 -0.37 1.10 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.17 3.15 7.43 -52.49 -0.39 2.76 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 1.57 5.14 -51.93 -0.27 1.30 16 43 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.12 2.27 1.86 -51.93 -0.10 2.17 16 LS Contribution 344.89 15.07 5.20 5.20 Total: -1.00 -33.96 344.89 -6.87 -40.82 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -5.83 Total: 15.50 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -0.76 Total: 4.78 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.01 Total: -55.85 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.46 Total: -28.28 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.96 -6.87 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755082425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.725 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds