Wall clock time and date at job start Fri Apr 10 2020 22:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38224 * 120.42032 * 2 1 4 4 N 1.31855 * 120.76626 * 180.02562 * 3 2 1 5 5 C 1.31884 * 121.72390 * 359.70381 * 4 3 2 6 6 C 1.38184 * 120.76421 * 0.57976 * 5 4 3 7 7 C 1.50701 * 120.41726 * 179.70290 * 6 5 4 8 8 H 1.09000 * 109.46648 * 159.72711 * 7 6 5 9 9 C 1.53003 * 109.47202 * 279.72753 * 7 6 5 10 10 N 1.46902 * 109.46943 * 39.72889 * 7 6 5 11 11 C 1.46897 * 110.99765 * 153.98889 * 10 7 6 12 12 H 1.09003 * 109.47345 * 37.30559 * 11 10 7 13 13 C 1.52996 * 109.47283 * 157.30571 * 11 10 7 14 14 C 1.50700 * 109.46915 * 295.21724 * 13 11 10 15 15 H 1.07999 * 119.99987 * 4.51299 * 14 13 11 16 16 C 1.37876 * 120.00211 * 184.50192 * 14 13 11 17 17 N 1.31519 * 119.99867 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00393 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47170 * 90.00160 * 18 16 14 20 20 H 1.48502 * 109.47420 * 210.00543 * 18 16 14 21 21 H 1.48502 * 109.47142 * 330.00425 * 18 16 14 22 22 C 1.50701 * 109.47232 * 277.30568 * 11 10 7 23 23 C 1.38236 * 119.99926 * 319.72445 * 22 11 10 24 24 C 1.38236 * 120.00175 * 179.78685 * 23 22 11 25 25 C 1.38238 * 119.99629 * 0.44571 * 24 23 22 26 26 C 1.38230 * 120.00038 * 359.81045 * 25 24 23 27 27 C 1.38233 * 120.00114 * 140.00234 * 22 11 10 28 28 C 1.38625 * 120.41941 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47704 * 269.97941 * 1 2 3 30 30 H 1.09003 * 109.47119 * 29.98638 * 1 2 3 31 31 H 1.09008 * 109.47045 * 149.97849 * 1 2 3 32 32 H 1.08002 * 119.61709 * 0.04047 * 3 2 1 33 33 H 1.07997 * 119.61870 * 180.31532 * 5 4 3 34 34 H 1.08998 * 109.46557 * 176.33237 * 9 7 6 35 35 H 1.08995 * 109.46739 * 296.33009 * 9 7 6 36 36 H 1.08996 * 109.47147 * 56.33547 * 9 7 6 37 37 H 1.00906 * 110.99845 * 30.03839 * 10 7 6 38 38 H 1.09001 * 109.47577 * 55.21664 * 13 11 10 39 39 H 1.08997 * 109.47640 * 175.21981 * 13 11 10 40 40 H 0.97008 * 119.99991 * 179.97438 * 17 16 14 41 41 H 1.07995 * 119.99946 * 0.02562 * 23 22 11 42 42 H 1.08001 * 120.00110 * 180.27472 * 24 23 22 43 43 H 1.08002 * 119.99889 * 179.83282 * 25 24 23 44 44 H 1.08005 * 120.00086 * 179.97438 * 26 25 24 45 45 H 1.07998 * 120.00368 * 359.97438 * 27 22 11 46 46 H 1.07997 * 120.79207 * 359.96372 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0823 0.0048 6 6 3.5948 -1.1471 -0.0009 7 6 4.4027 -2.4192 -0.0016 8 1 3.7824 -3.2437 0.3500 9 6 4.8870 -2.7151 -1.4225 10 7 5.5612 -2.2640 0.8883 11 6 6.0073 -3.5653 1.4034 12 1 5.9052 -4.3194 0.6230 13 6 7.4732 -3.4692 1.8311 14 6 8.3321 -3.1978 0.6229 15 1 7.8723 -3.0309 -0.3400 16 6 9.7048 -3.1623 0.7468 17 7 10.2647 -3.3658 1.9194 18 14 10.7694 -2.8251 -0.7505 19 1 10.9920 -1.3626 -0.8805 20 1 12.0763 -3.5127 -0.5938 21 1 10.0864 -3.3319 -1.9678 22 6 5.1624 -3.9525 2.5897 23 6 4.7980 -2.9971 3.5200 24 6 4.0192 -3.3513 4.6058 25 6 3.6126 -4.6628 4.7662 26 6 3.9814 -5.6191 3.8388 27 6 4.7565 -5.2640 2.7506 28 6 2.2089 -1.1954 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6675 2.1276 0.0007 33 1 5.3046 0.1285 0.0093 34 1 5.5250 -3.5988 -1.4121 35 1 4.0281 -2.8947 -2.0690 36 1 5.4529 -1.8628 -1.7983 37 1 5.3542 -1.6277 1.6436 38 1 7.5897 -2.6577 2.5494 39 1 7.7798 -4.4085 2.2912 40 1 11.2305 -3.3412 2.0065 41 1 5.1185 -1.9733 3.3965 42 1 3.7309 -2.6041 5.3303 43 1 3.0064 -4.9401 5.6160 44 1 3.6640 -6.6438 3.9643 45 1 5.0445 -6.0113 2.0260 46 1 1.6888 -2.1419 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184419389.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:25:35 Heat of formation + Delta-G solvation = 48.345239 kcal Electronic energy + Delta-G solvation = -25406.653607 eV Core-core repulsion = 22067.316486 eV Total energy + Delta-G solvation = -3339.337121 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38355 -39.22926 -36.72015 -33.87321 -33.59357 -32.27823 -30.68425 -30.31122 -28.96302 -27.99115 -27.30807 -24.69135 -23.51673 -22.83628 -22.33600 -21.88073 -20.04540 -19.55519 -17.15570 -16.80610 -16.55831 -16.05838 -15.30400 -14.81876 -14.77436 -14.43777 -14.35590 -14.03344 -13.62778 -13.47283 -13.11197 -13.02217 -12.88172 -12.77700 -12.63587 -12.55233 -12.22282 -12.06066 -11.90101 -11.56172 -11.18548 -11.06910 -10.95542 -10.75709 -10.59793 -10.52091 -10.10981 -9.68833 -9.52227 -9.31438 -9.03032 -8.74340 -8.64970 -8.27882 -8.23148 -7.80962 -5.88496 -3.86967 1.14444 1.30870 1.67219 1.67948 3.40063 3.46294 3.49094 3.83156 4.08235 4.42488 4.56319 4.57949 4.74929 4.81736 5.00476 5.06766 5.13924 5.16580 5.20150 5.26247 5.36670 5.41296 5.46871 5.49436 5.63166 5.65719 5.74738 5.80595 5.82897 5.92246 6.02821 6.08398 6.16551 6.24930 6.30897 6.32309 6.39977 6.60217 6.73503 6.74758 6.79214 6.81617 6.95844 7.29987 7.47915 7.64556 7.91819 7.97089 8.07424 8.12682 8.55530 9.18968 9.74802 11.23313 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.009649 B = 0.005059 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.181761 B = 5533.285657 C = 7621.711010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.144 4.144 3 C 0.088 3.912 4 N -0.482 5.482 5 C 0.111 3.889 6 C -0.125 4.125 7 C 0.127 3.873 8 H 0.047 0.953 9 C -0.133 4.133 10 N -0.652 5.652 11 C 0.130 3.870 12 H 0.078 0.922 13 C 0.042 3.958 14 C -0.490 4.490 15 H 0.063 0.937 16 C 0.052 3.948 17 N -0.902 5.902 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.275 1.275 22 C -0.092 4.092 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.136 4.136 26 C -0.121 4.121 27 C -0.117 4.117 28 C -0.074 4.074 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.149 0.851 33 H 0.168 0.832 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.335 0.665 38 H 0.015 0.985 39 H 0.022 0.978 40 H 0.257 0.743 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.120 0.880 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.834 1.676 -0.532 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.146 4.146 3 C -0.070 4.070 4 N -0.189 5.189 5 C -0.046 4.046 6 C -0.128 4.128 7 C 0.017 3.983 8 H 0.065 0.935 9 C -0.191 4.191 10 N -0.283 5.283 11 C 0.020 3.980 12 H 0.096 0.904 13 C 0.005 3.995 14 C -0.529 4.529 15 H 0.081 0.919 16 C -0.148 4.148 17 N -0.543 5.543 18 Si 0.718 3.282 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.200 1.200 22 C -0.093 4.093 23 C -0.136 4.136 24 C -0.137 4.137 25 C -0.155 4.155 26 C -0.139 4.139 27 C -0.135 4.135 28 C -0.101 4.101 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.185 0.815 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.155 0.845 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.067 0.933 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.138 0.862 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.740 2.498 -0.991 18.932 hybrid contribution -0.435 -0.860 0.062 0.966 sum -19.176 1.638 -0.929 19.268 Atomic orbital electron populations 1.20686 0.90537 1.02832 1.02379 1.20852 0.97284 0.94211 1.02246 1.22632 0.90282 0.97169 0.96896 1.67761 1.08041 1.31497 1.11599 1.22877 1.01159 0.86628 0.93929 1.21117 0.94085 0.97244 1.00336 1.20400 0.90348 0.91871 0.95719 0.93508 1.21781 1.00286 1.03098 0.93927 1.60845 1.32782 1.12007 1.22706 1.21040 0.96539 0.89534 0.90880 0.90397 1.19087 0.86190 0.97273 0.96958 1.21130 0.90382 1.46337 0.95032 0.91885 1.24999 0.98245 0.96015 0.95537 1.69974 1.10292 1.51134 1.22881 0.86638 0.79818 0.78235 0.83492 1.20870 1.21686 1.20040 1.21186 0.96138 0.93661 0.98359 1.20948 0.98462 0.99566 0.94643 1.21049 0.98603 0.96239 0.97826 1.21004 1.01552 0.93524 0.99377 1.21079 0.98911 0.98944 0.94997 1.21083 0.98150 0.96009 0.98281 1.21361 0.93505 0.98025 0.97190 0.91133 0.91360 0.91543 0.83348 0.81497 0.91405 0.93580 0.91797 0.84500 0.96636 0.95935 0.93305 0.86421 0.86708 0.86820 0.86664 0.86246 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.04 36.00 0.36 -0.45 16 2 C -0.14 -1.57 5.90 -104.49 -0.62 -2.19 16 3 C 0.09 1.06 10.86 -17.55 -0.19 0.87 16 4 N -0.48 -7.09 10.36 -13.25 -0.14 -7.23 16 5 C 0.11 1.65 10.16 -17.55 -0.18 1.47 16 6 C -0.13 -1.72 4.73 -104.48 -0.49 -2.22 16 7 C 0.13 1.86 2.64 -68.86 -0.18 1.68 16 8 H 0.05 0.68 7.43 -51.93 -0.39 0.30 16 9 C -0.13 -1.95 9.41 37.16 0.35 -1.60 16 10 N -0.65 -11.29 5.14 -102.17 -0.52 -11.82 16 11 C 0.13 2.47 2.00 -68.87 -0.14 2.33 16 12 H 0.08 1.50 7.04 -51.93 -0.37 1.14 16 13 C 0.04 1.04 4.63 -27.89 -0.13 0.91 16 14 C -0.49 -13.23 8.83 -34.44 -0.30 -13.53 16 15 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 16 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 17 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.09 -1.57 4.49 -104.62 -0.47 -2.04 16 23 C -0.12 -1.90 9.14 -39.58 -0.36 -2.26 16 24 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 25 C -0.14 -1.82 10.05 -39.58 -0.40 -2.22 16 26 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 27 C -0.12 -1.83 9.67 -39.58 -0.38 -2.21 16 28 C -0.07 -0.89 9.51 -39.28 -0.37 -1.26 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.07 0.45 8.10 -51.92 -0.42 0.03 16 32 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 33 H 0.17 2.62 7.72 -52.49 -0.40 2.21 16 34 H 0.07 1.07 7.44 -51.93 -0.39 0.69 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.33 5.68 5.64 -39.29 -0.22 5.46 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.12 1.88 6.52 -52.49 -0.34 1.54 16 42 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 43 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 45 H 0.12 1.75 8.04 -52.49 -0.42 1.33 16 46 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -30.53 380.28 -10.75 -41.29 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.14 Total: 7.02 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -4.40 Total: -25.51 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.07 Total: -45.28 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.53 -10.75 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184419389.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.631 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds